CmaCh14G003440.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G003440.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	HVA22-like protein
Location	Cma_Chr14: 1525471 .. 1526068 (+)
Sequence length	534
RNA-Seq Expression	CmaCh14G003440.1
Synteny	CmaCh14G003440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATTTCACTCAAAGAAGAGCTGATTTGTATTTCCCCCGATCACCATTATTAGACAAAACTGACCCCAACAACGCGAAATATTCGATTAAAAGCGTTGGTTATACTGGAAATTATGGGCAGGTTGACGAAGCTGAGCCAAGCTGAAAATCTAAGCCAGATACGGTGGAGGAGGTGGGGTCCAGAGGAGCTCGGGGAGGAGGCCATGGGCTGAAGATAGGCCCACGCCGCCTGCTTCACAAGGCGGTTGCGGATCGAGATCTCGTAGCCGGAATTTGCTGCAGAGGCGGCGGTAGGGGAGTAGATAGCGGTAGCCGAGGGCAAAATGTCTCTGAGGGAAGTGTAGGCAAGGGAGGGGGAGGAGGAGGAGGATTTTATTGGGACGAGCTCGAAAGCCAACGGTAGCGGCGGCGATGACGCTACACCACGGGAGGACTTGGTGGCGGCGAGAAGGTTTAGCTTAGATGACACGACGACGGGCACCGTGATCGAGTTTCTGCGACGGAGATTGGGCAGCGGTGGGTCTGGTTTCAGAGCGGAGGTCTGGTCCATGGCGGCGGAAACAGAGAGTTTGAGAGAGATGAATTTAATTTAG

mRNA sequence

ATGACTGATTTCACTCAAAGAAGAGCTGATTTGTATTTCCCCCGATCACCATTATTAGACAAAACTGACCCCAACAACGCGAAATATTCGATTAAAAGCGTTGATACGGTGGAGGAGGTGGGGTCCAGAGGAGCTCGGGGAGGAGGCCATGGGCTGAAGATAGGCCCACGCCGCCTGCTTCACAAGGCGGTTGCGGATCGAGATCTCGTAGCCGGAATTTGCTGCAGAGGCGGCGGTAGGGGAGTAGATAGCGGTAGCCGAGGGCAAAATGTCTCTGAGGGAAGTGCAAGGGAGGGGGAGGAGGAGGAGGATTTTATTGGGACGAGCTCGAAAGCCAACGGTAGCGGCGGCGATGACGCTACACCACGGGAGGACTTGGTGGCGGCGAGAAGGTTTAGCTTAGATGACACGACGACGGGCACCGTGATCGAGTTTCTGCGACGGAGATTGGGCAGCGGTGGGTCTGGTTTCAGAGCGGAGGTCTGGTCCATGGCGGCGGAAACAGAGAGTTTGAGAGAGATGAATTTAATTTAG

Coding sequence (CDS)

ATGACTGATTTCACTCAAAGAAGAGCTGATTTGTATTTCCCCCGATCACCATTATTAGACAAAACTGACCCCAACAACGCGAAATATTCGATTAAAAGCGTTGATACGGTGGAGGAGGTGGGGTCCAGAGGAGCTCGGGGAGGAGGCCATGGGCTGAAGATAGGCCCACGCCGCCTGCTTCACAAGGCGGTTGCGGATCGAGATCTCGTAGCCGGAATTTGCTGCAGAGGCGGCGGTAGGGGAGTAGATAGCGGTAGCCGAGGGCAAAATGTCTCTGAGGGAAGTGCAAGGGAGGGGGAGGAGGAGGAGGATTTTATTGGGACGAGCTCGAAAGCCAACGGTAGCGGCGGCGATGACGCTACACCACGGGAGGACTTGGTGGCGGCGAGAAGGTTTAGCTTAGATGACACGACGACGGGCACCGTGATCGAGTTTCTGCGACGGAGATTGGGCAGCGGTGGGTCTGGTTTCAGAGCGGAGGTCTGGTCCATGGCGGCGGAAACAGAGAGTTTGAGAGAGATGAATTTAATTTAG

Protein sequence

MTDFTQRRADLYFPRSPLLDKTDPNNAKYSIKSVDTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSEGSAREGEEEEDFIGTSSKANGSGGDDATPREDLVAARRFSLDDTTTGTVIEFLRRRLGSGGSGFRAEVWSMAAETESLREMNLI

Homology

[Close]

BLAST of CmaCh14G003440.1 vs. ExPASy TrEMBL
Match: A0A7J7HWA4 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_004345 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-09
Identity = 56/141 (39.72%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 35  DTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSEG 94
           D  EEV + GAR GGHGL++GP  L  +AVAD DLVAG+   GGGRG+  G         
Sbjct: 522 DAAEEVATAGARRGGHGLEVGPSGLFDEAVADGDLVAGLGRDGGGRGIHGGG-------- 581

Query: 95  SAREGEEEEDFIGTSSKA--NGSGGDDATPRED----------------LVAAR----RF 154
               GEEE   +  SSK+  +  G DD    +D                L A R    R 
Sbjct: 582 ----GEEERGLMEMSSKSMIDWKGCDDELDDDDNEVEEAEVAAAATVGKLAAWRGFVGRV 641

[Close]

BLAST of CmaCh14G003440.1 vs. ExPASy TrEMBL
Match: A0A540LKX7 (HVA22-like protein OS=Malus baccata OX=106549 GN=C1H46_027268 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 47/127 (37.01%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 35  DTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSEG 94
           +  +EV +R A GGGHGL++GP  LLH+AVAD D VAG+   GGG GV+ G  G+ V E 
Sbjct: 264 EAAKEVWARWAGGGGHGLEVGPGGLLHEAVADGDFVAGVVGGGGGGGVNGGG-GEQVFER 323

Query: 95  SAREGEEEEDFIGTSSKANGSGGDDATPREDLVAARRFSLDDTTTGTVIEFLRRRLGSGG 154
           S   G                 G++   +      R  ++ +      +E L RR GSGG
Sbjct: 324 SVGFG--------------ALVGEELQVQLRRCWGRNVTVWEGGAVEALEMLGRRGGSGG 375

Query: 155 SGFRAEV 162
            G  AE+
Sbjct: 384 VGEEAEL 375

[Close]

BLAST of CmaCh14G003440.1 vs. ExPASy TrEMBL
Match: A0A7J0FH76 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_12g0004840 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-06
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 35  DTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSE- 94
           +T EEV + G R GGHGL+IGP  LLH+ VAD DL A    RGGGRGVD G  G+ V E 
Sbjct: 161 ETEEEVAAVGFRRGGHGLEIGPGGLLHEVVADGDLAAD--GRGGGRGVDCGGGGEEVLER 220

Query: 95  --GSAREGEEE 103
             G   +GE E
Sbjct: 221 GVGLGLDGELE 229

[Close]

BLAST of CmaCh14G003440.1 vs. ExPASy TrEMBL
Match: A0A371EN55 (HVA22-like protein j (Fragment) OS=Mucuna pruriens OX=157652 GN=HVA22J PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-04
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 34  VDTVEEVGSRGARGG-GHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVS 93
           V+  EEV +  A GG GHGL++GP  LLHKAVAD DLV  +    G  GVD G + ++V 
Sbjct: 327 VEAAEEVRAGWAAGGSGHGLEVGPCGLLHKAVADGDLVVLVVACDG--GVDGGRKRKHVF 386

Query: 94  EGSAREGEEEEDFIGTSSKANGSGG 118
           EGS R G + E  +      +G GG
Sbjct: 387 EGSIRWGFDGEWVVEKRFCWSGGGG 409

[Close]

BLAST of CmaCh14G003440.1 vs. NCBI nr
Match: KAF5957120.1 (hypothetical protein HYC85_004345 [Camellia sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 56/141 (39.72%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 35  DTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSEG 94
           D  EEV + GAR GGHGL++GP  L  +AVAD DLVAG+   GGGRG+  G         
Sbjct: 522 DAAEEVATAGARRGGHGLEVGPSGLFDEAVADGDLVAGLGRDGGGRGIHGGG-------- 581

Query: 95  SAREGEEEEDFIGTSSKA--NGSGGDDATPRED----------------LVAAR----RF 154
               GEEE   +  SSK+  +  G DD    +D                L A R    R 
Sbjct: 582 ----GEEERGLMEMSSKSMIDWKGCDDELDDDDNEVEEAEVAAAATVGKLAAWRGFVGRV 641

[Close]

BLAST of CmaCh14G003440.1 vs. NCBI nr
Match: TQD87128.1 (hypothetical protein C1H46_027268 [Malus baccata])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 47/127 (37.01%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 35  DTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSEG 94
           +  +EV +R A GGGHGL++GP  LLH+AVAD D VAG+   GGG GV+ G  G+ V E 
Sbjct: 264 EAAKEVWARWAGGGGHGLEVGPGGLLHEAVADGDFVAGVVGGGGGGGVNGGG-GEQVFER 323

Query: 95  SAREGEEEEDFIGTSSKANGSGGDDATPREDLVAARRFSLDDTTTGTVIEFLRRRLGSGG 154
           S   G                 G++   +      R  ++ +      +E L RR GSGG
Sbjct: 324 SVGFG--------------ALVGEELQVQLRRCWGRNVTVWEGGAVEALEMLGRRGGSGG 375

Query: 155 SGFRAEV 162
            G  AE+
Sbjct: 384 VGEEAEL 375

[Close]

BLAST of CmaCh14G003440.1 vs. NCBI nr
Match: GFY97943.1 (hypothetical protein Acr_12g0004840 [Actinidia rufa])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 35  DTVEEVGSRGARGGGHGLKIGPRRLLHKAVADRDLVAGICCRGGGRGVDSGSRGQNVSE- 94
           +T EEV + G R GGHGL+IGP  LLH+ VAD DL A    RGGGRGVD G  G+ V E 
Sbjct: 161 ETEEEVAAVGFRRGGHGLEIGPGGLLHEVVADGDLAAD--GRGGGRGVDCGGGGEEVLER 220

Query: 95  --GSAREGEEE 103
             G   +GE E
Sbjct: 221 GVGLGLDGELE 229

The following BLAST results are available for this feature:

BLAST of CmaCh14G003440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G003440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7HWA4	8.1e-09	39.72	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_004345 PE=4 SV=1	[more]
A0A540LKX7	6.4e-06	37.01	HVA22-like protein OS=Malus baccata OX=106549 GN=C1H46_027268 PE=3 SV=1	[more]
A0A7J0FH76	8.4e-06	54.93	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_12g0004840 PE=4 SV=1	[more]
A0A371EN55	6.0e-04	45.88	HVA22-like protein j (Fragment) OS=Mucuna pruriens OX=157652 GN=HVA22J PE=4 SV=1	[more]

BLAST of CmaCh14G003440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5957120.1	1.7e-08	39.72	hypothetical protein HYC85_004345 [Camellia sinensis]	[more]
TQD87128.1	1.3e-05	37.01	hypothetical protein C1H46_027268 [Malus baccata]	[more]
GFY97943.1	1.7e-05	54.93	hypothetical protein Acr_12g0004840 [Actinidia rufa]	[more]

BLAST of CmaCh14G003440.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G003440	CmaCh14G003440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G003440.1:exon:1488	CmaCh14G003440.1:exon:1488	exon
CmaCh14G003440.1:exon:1489	CmaCh14G003440.1:exon:1489	exon
CmaCh14G003440.1:exon:1490	CmaCh14G003440.1:exon:1490	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G003440.1:cds	CmaCh14G003440.1:cds	CDS
CmaCh14G003440.1:cds	CmaCh14G003440.1:cds_2	CDS
CmaCh14G003440.1:cds	CmaCh14G003440.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G003440.1	CmaCh14G003440.1-protein	polypeptide