CmaCh13G008960.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G008960.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-H2 finger protein ATL56-like
Location	Cma_Chr13: 7215118 .. 7215525 (+)
Sequence length	408
RNA-Seq Expression	CmaCh13G008960.1
Synteny	CmaCh13G008960.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGCTGGCGGTGGGGATGGGTGTGTTGGTGGTGTGTACTGTGGGAATGGCTTTGAGAGGAGGAGGAGAAGGGGTTGGGAGAAGTAATAATGGTAATGATTTAGATTTGGAGAAGCTTGTTATGACTCAAAAGAGGGGAAAACAGAGTGTTTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAATTGGGGGAGACATGCAGATTGCTGCCGAATTGCAGCCATACCTTCCATGTCCGTTGCATTGATTCTTGGCTTTTGAAGACACCCATTTGCCCCATTTGCAGAACTTCGGCTGCTCTTCCAAAAATTGCCTTGGTTTCGGCAGACATGAGGAGAGGTGGCCGGGAGGAAGTTGAAGATCAGCGCCGCCGTCTGTAA

mRNA sequence

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGCTGGCGGTGGGGATGGGTGTGTTGGTGGTGTGTACTGTGGGAATGGCTTTGAGAGGAGGAGGAGAAGGGGTTGGGAGAAGTAATAATGGTAATGATTTAGATTTGGAGAAGCTTGTTATGACTCAAAAGAGGGGAAAACAGAGTGTTTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAATTGGGGGAGACATGCAGATTGCTGCCGAATTGCAGCCATACCTTCCATGTCCGTTGCATTGATTCTTGGCTTTTGAAGACACCCATTTGCCCCATTTGCAGAACTTCGGCTGCTCTTCCAAAAATTGCCTTGGTTTCGGCAGACATGAGGAGAGGTGGCCGGGAGGAAGTTGAAGATCAGCGCCGCCGTCTGTAA

Coding sequence (CDS)

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGCTGGCGGTGGGGATGGGTGTGTTGGTGGTGTGTACTGTGGGAATGGCTTTGAGAGGAGGAGGAGAAGGGGTTGGGAGAAGTAATAATGGTAATGATTTAGATTTGGAGAAGCTTGTTATGACTCAAAAGAGGGGAAAACAGAGTGTTTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAATTGGGGGAGACATGCAGATTGCTGCCGAATTGCAGCCATACCTTCCATGTCCGTTGCATTGATTCTTGGCTTTTGAAGACACCCATTTGCCCCATTTGCAGAACTTCGGCTGCTCTTCCAAAAATTGCCTTGGTTTCGGCAGACATGAGGAGAGGTGGCCGGGAGGAAGTTGAAGATCAGCGCCGCCGTCTGTAA

Protein sequence

MVMEIVVSAVLLAVGMGVLVVCTVGMALRGGGEGVGRSNNGNDLDLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAALPKIALVSADMRRGGREEVEDQRRRL

Homology

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAAL 111
           +CVVC + F+ G+ CR LP C H FH +C+D+WLLK   CPICR    L
Sbjct: 109 DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 157

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 32  GEGVGRSNNGNDL-DLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRC 91
           GE   R  +G+ L  L   +M+ +  ++ V  C +CL+  K GE  R LP C HTFH+ C
Sbjct: 144 GELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVC 203

Query: 92  IDSWLLKTPICPICR 106
           +D WL++   CPICR
Sbjct: 204 VDKWLIRHGSCPICR 218

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-11
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 57  KQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTS 108
           K    EC++CL  F  GET R+LP C+H FHV+CID+WLL    CP CR S
Sbjct: 107 KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQS 157

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-11
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICR 106
           +CVVC++ F+ G+ CR LP C H FH +C+D WL+K   CPICR
Sbjct: 114 DCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-11
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAALPKIALVSADMR 121
           EC++CL  F+ GE  R+LP C+H FHVRCID+WLL    CP CR S  L + + ++   R
Sbjct: 113 ECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRR 172

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.7e-31
Identity = 85/128 (66.41%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVGRSNNGNDL---DLEKLVMTQK 60
           MVMEIVVSAVLL VG+ VLV   VC VG A RG  EG+ RSN G +L   DLEKL   + 
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  RG--KQSV----LECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSA 117
           +   KQS     LECVVCLE FK GE CRLLPNC H+FHV CIDSWLLKTPICPICRT A
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 84/128 (65.62%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVGRSNNGNDL---DLEKLVMTQK 60
           MVMEIVVSAVLL VG+ VLV   VC VG A RG  EG+ RSN G +L   DLEKL   + 
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  RG--KQSV----LECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSA 117
           +   KQS     LECVVCLE FK GE CRLLPNC H+FHV CIDSWLLKTPICPICRT A
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy TrEMBL
Match: A0A2P5F6F5 (43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_109420 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 68/136 (50.00%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVGRSNNGN-----DLDLEKLVMT 60
           MVMEIV+S +LL VG+ VLV   VC VG A R G +G+G +   N     ++  E L M 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFRRGNQGLGTAQGSNITGTKNMSSEDLKMI 60

Query: 61  --------QKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPIC 120
                     +G  S ++C VCLE+FK G+ CRLLP+C H+FH +CIDSWLLK PICPIC
Sbjct: 61  PCFDYMGGDNKG-TSPVDCAVCLENFKTGDKCRLLPSCRHSFHSQCIDSWLLKAPICPIC 120

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy TrEMBL
Match: A0A438EFR3 (Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_0 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGG-------GEGVGRSNNGNDLDLEKL- 60
           +VM IV+S +LL +G+GVLV   VC VG A RGG         G  RS + +  DL+KL 
Sbjct: 13  IVMAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGNGRMVERGNPRSTSMSLDDLDKLP 72

Query: 61  ---VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                 +++G  S ++C VCL++FK+G+ CRLLP C+H+FH +C+DSWLLKTPICPICRT
Sbjct: 73  CFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPICRT 132

[Close]

BLAST of CmaCh13G008960.1 vs. ExPASy TrEMBL
Match: A0A438JIH1 (Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_1 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGG-------GEGVGRSNNGNDLDLEKL- 60
           +VM IV+S +LL +G+GVLV   VC VG A RGG         G  RS + +  DL+KL 
Sbjct: 13  IVMAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGNGRMVERGNPRSTSMSLDDLDKLP 72

Query: 61  ---VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                 +++G  S ++C VCL++FK+G+ CRLLP C+H+FH +C+DSWLLKTPICPICRT
Sbjct: 73  CFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPICRT 132

[Close]

BLAST of CmaCh13G008960.1 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 85/128 (66.41%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVGRSNNGNDL---DLEKLVMTQK 60
           MVMEIVVSAVLL VG+ VLV   VC VG A RG  EG+ RSN G +L   DLEKL   + 
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  RG--KQSV----LECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSA 117
           +   KQS     LECVVCLE FK GE CRLLPNC H+FHV CIDSWLLKTPICPICRT A
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of CmaCh13G008960.1 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 3.5e-30
Identity = 84/128 (65.62%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVGRSNNGNDL---DLEKLVMTQK 60
           MVMEIVVSAVLL VG+ VLV   VC VG A RG  EG+ RSN G +L   DLEKL   + 
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  RG--KQSV----LECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSA 117
           +   KQS     LECVVCLE FK GE CRLLPNC H+FHV CIDSWLLKTPICPICRT A
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of CmaCh13G008960.1 vs. NCBI nr
Match: PON93371.1 (43kDa postsynaptic protein [Trema orientale])

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-23
Identity = 68/136 (50.00%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVGRSNNGN-----DLDLEKLVMT 60
           MVMEIV+S +LL VG+ VLV   VC VG A R G +G+G +   N     ++  E L M 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFRRGNQGLGTAQGSNITGTKNMSSEDLKMI 60

Query: 61  --------QKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPIC 120
                     +G  S ++C VCLE+FK G+ CRLLP+C H+FH +CIDSWLLK PICPIC
Sbjct: 61  PCFDYMGGDNKG-TSPVDCAVCLENFKTGDKCRLLPSCRHSFHSQCIDSWLLKAPICPIC 120

[Close]

BLAST of CmaCh13G008960.1 vs. NCBI nr
Match: RVW46549.1 (putative RING-H2 finger protein ATL49 [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-23
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGG-------GEGVGRSNNGNDLDLEKL- 60
           +VM IV+S +LL +G+GVLV   VC VG A RGG         G  RS + +  DL+KL 
Sbjct: 13  IVMAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGNGRMVERGNPRSTSMSLDDLDKLP 72

Query: 61  ---VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                 +++G  S ++C VCL++FK+G+ CRLLP C+H+FH +C+DSWLLKTPICPICRT
Sbjct: 73  CFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPICRT 132

[Close]

BLAST of CmaCh13G008960.1 vs. NCBI nr
Match: XP_034707634.1 (RING-H2 finger protein ATL56-like [Vitis riparia])

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-23
Identity = 67/133 (50.38%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGG-------GEGVGRSNNGNDLDLEKL- 60
           +VM IV+S +LL +G+GVLV   VC VG A RGG         G  RS + +  DL+KL 
Sbjct: 13  IVMAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGNGRMVERGNPRSTSMSLDDLDKLP 72

Query: 61  ---VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                 +++G  S ++C VCL++FK+G+ CRLLP C+H+FH +C+DSWLLKTPICPICRT
Sbjct: 73  CFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPICRT 132

[Close]

BLAST of CmaCh13G008960.1 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAAL 111
           +CVVC + F+ G+ CR LP C H FH +C+D+WLLK   CPICR    L
Sbjct: 109 DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 157

[Close]

BLAST of CmaCh13G008960.1 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 32  GEGVGRSNNGNDL-DLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRC 91
           GE   R  +G+ L  L   +M+ +  ++ V  C +CL+  K GE  R LP C HTFH+ C
Sbjct: 144 GELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVC 203

Query: 92  IDSWLLKTPICPICR 106
           +D WL++   CPICR
Sbjct: 204 VDKWLIRHGSCPICR 218

[Close]

BLAST of CmaCh13G008960.1 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 57  KQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTS 108
           K    EC++CL  F  GET R+LP C+H FHV+CID+WLL    CP CR S
Sbjct: 107 KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQS 157

[Close]

BLAST of CmaCh13G008960.1 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAALPKIALVSADMR 121
           EC++CL  F+ GE  R+LP C+H FHVRCID+WLL    CP CR S  L + + ++   R
Sbjct: 113 ECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRR 172

[Close]

BLAST of CmaCh13G008960.1 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICR 106
           +CVVC++ F+ G+ CR LP C H FH +C+D WL+K   CPICR
Sbjct: 114 DCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

The following BLAST results are available for this feature:

BLAST of CmaCh13G008960.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	1.7e-11	53.06	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q8LBA0	2.9e-11	41.33	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q9FLC6	3.7e-11	54.90	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9M0C3	4.9e-11	54.55	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q9SG96	4.9e-11	48.33	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]

BLAST of CmaCh13G008960.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	5.7e-31	66.41	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	1.7e-30	65.63	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A2P5F6F5	1.2e-23	50.00	43kDa postsynaptic protein OS=Trema orientale OX=63057 GN=TorRG33x02_109420 PE=4...	[more]
A0A438EFR3	2.6e-23	50.38	Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_0 PE=4...	[more]
A0A438JIH1	2.6e-23	50.38	Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_1 PE=4...	[more]

BLAST of CmaCh13G008960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994122.1	1.2e-30	66.41	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	3.5e-30	65.63	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
PON93371.1	2.4e-23	50.00	43kDa postsynaptic protein [Trema orientale]	[more]
RVW46549.1	5.3e-23	50.38	putative RING-H2 finger protein ATL49 [Vitis vinifera]	[more]
XP_034707634.1	5.3e-23	50.38	RING-H2 finger protein ATL56-like [Vitis riparia]	[more]

BLAST of CmaCh13G008960.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	1.2e-12	53.06	RING/U-box superfamily protein	[more]
AT1G74410.1	2.0e-12	41.33	RING/U-box superfamily protein	[more]
AT5G05280.1	2.7e-12	54.90	RING/U-box superfamily protein	[more]
AT3G10910.1	3.5e-12	48.33	RING/U-box superfamily protein	[more]
AT4G30370.1	3.5e-12	54.55	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..135
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..117
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..117
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 62..105 e-value: 4.93449E-16 score: 65.0157
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 62..110
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 63..104 e-value: 2.6E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 62..105 e-value: 4.5E-12 score: 46.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 63..105 score: 12.076194
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 44..110 e-value: 1.6E-19 score: 70.9

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh13G008960	CmaCh13G008960	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G008960.1:exon:2444	CmaCh13G008960.1:exon:2444	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G008960.1:cds	CmaCh13G008960.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh13G008960.1	CmaCh13G008960.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane