CmaCh11G012110.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G012110.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Location	Cma_Chr11: 7391876 .. 7392489 (+)
Sequence length	405
RNA-Seq Expression	CmaCh11G012110.1
Synteny	CmaCh11G012110.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCCTCCCTTCCGGTTCAGTAGCACAGCGAACATCCTTTCATTTATTGGAGAGGTTCCAGAGTAAACTCTAATTCATCTTTCCTTCCTGTTCTTTCATGTCTTTCCTTCTAGAGTTCAGTCTCTTTCCTGTCCCTGAATTTATTCAACCACTGTAAAGGAGAGAGGAGAGAATCTTTCGTTTAGTCTTCAGTCTCATTCTTCTTTCATTTTCTTCTTCTTTTCTTTACTATCCCTTGTTGTTGTGAGAATTCTTAATTCATGAAAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTATACTCCTTCATATGAAACCAAAGATACTGATATCTTGGCAGCATTACGAGTAACTCCTCAATCGGGAGTTCCACCCGAGGAAGTAGGGGCTGCTGTAGCTGCTGCTGAATCTTCTACTAGTACATGGACAACTGTGTGGACCGATGAGCTTACCAGTCTTGATCGTTACGTTACAAAGGACGATGTTATGGATGTTCCCGCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTGCTTATCCCCTAGACCCTTTTGAAGAAGGTTCTGTTACTAACTGA

mRNA sequence

ATGACTTCCCTCCCTTCCGGTTCAGTAGCACAGCGAACATCCTTTCATTTATTGGAGAGGTTCCAGAAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTATACTCCTTCATATGAAACCAAAGATACTGATATCTTGGCAGCATTACGAGTAACTCCTCAATCGGGAGTTCCACCCGAGGAAGTAGGGGCTGCTGTAGCTGCTGCTGAATCTTCTACTAGTACATGGACAACTGTGTGGACCGATGAGCTTACCAGTCTTGATCGTTACGTTACAAAGGACGATGTTATGGATGTTCCCGCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTGCTTATCCCCTAGACCCTTTTGAAGAAGGTTCTGTTACTAACTGA

Coding sequence (CDS)

ATGACTTCCCTCCCTTCCGGTTCAGTAGCACAGCGAACATCCTTTCATTTATTGGAGAGGTTCCAGAAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTATACTCCTTCATATGAAACCAAAGATACTGATATCTTGGCAGCATTACGAGTAACTCCTCAATCGGGAGTTCCACCCGAGGAAGTAGGGGCTGCTGTAGCTGCTGCTGAATCTTCTACTAGTACATGGACAACTGTGTGGACCGATGAGCTTACCAGTCTTGATCGTTACGTTACAAAGGACGATGTTATGGATGTTCCCGCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTGCTTATCCCCTAGACCCTTTTGAAGAAGGTTCTGTTACTAACTGA

Protein sequence

MTSLPSGSVAQRTSFHLLERFQKTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTSTWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN

Homology

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy Swiss-Prot
Match: Q3BAN4 (Ribulose bisphosphate carboxylase large chain OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=rbcL PE=3 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy Swiss-Prot
Match: P31202 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salacia pallescens OX=4320 GN=rbcL PE=3 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++  AGEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy Swiss-Prot
Match: P27066 (Ribulose bisphosphate carboxylase large chain OS=Glycine max OX=3847 GN=rbcL PE=1 SV=3)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++  AGEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYGLEPVAGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy Swiss-Prot
Match: P31183 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Corynocarpus laevigatus OX=4312 GN=rbcL PE=3 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++  AGEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy Swiss-Prot
Match: P27064 (Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL PE=1 SV=5)

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++  AGEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy TrEMBL
Match: A0A5J6KLP5 (Ribulose bisphosphate carboxylase large chain OS=Hexalectris nitida OX=646078 GN=rbcL PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   KTKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy TrEMBL
Match: A0A5J6KHF5 (Ribulose bisphosphate carboxylase large chain OS=Hexalectris revoluta OX=142981 GN=rbcL PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   KTKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy TrEMBL
Match: A0A5J6KBS3 (Ribulose bisphosphate carboxylase large chain OS=Hexalectris nitida OX=646078 GN=rbcL PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   KTKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy TrEMBL
Match: G8FKU2 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Porpax reticulata OX=1097233 GN=rbcL PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.8e-38
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP+YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 2   ETKASVGFKAGVKDYKLTYYTPNYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 61

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V +GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 62  TWTTVWTDGLTSLDRYKGRCYHIEVVSGEENQYIAYV-AYPLDLFEEGSVTN 111

[Close]

BLAST of CmaCh11G012110.1 vs. ExPASy TrEMBL
Match: U5YGB2 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Pouzolzia mixta OX=992773 GN=rbcL PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.8e-38
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY    D+  V AGEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYAGTCDIEPV-AGEENQYIAYV-AYPLDLFEEGSVTN 114

[Close]

BLAST of CmaCh11G012110.1 vs. NCBI nr
Match: QEV85166.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris revoluta])

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   KTKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. NCBI nr
Match: QEV84828.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris nitida] >QEV85020.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris nitida])

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   KTKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. NCBI nr
Match: QEV84619.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris nitida])

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   KTKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V  GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEVVVGEENQYIAYV-AYPLDLFEEGSVTN 115

[Close]

BLAST of CmaCh11G012110.1 vs. NCBI nr
Match: AYF59981.1 (ribulose-1,5-bisphosphate carboxylase large subunit, partial [Desmodium tortuosum])

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-38
Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           KTKASVGFKAGVKD KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 1   KTKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 60

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++  AGEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 61  TWTTVWTDGLTSLDRYKGRCYGIEPVAGEENQYIAYV-AYPLDLFEEGSVTN 110

[Close]

BLAST of CmaCh11G012110.1 vs. NCBI nr
Match: AER00139.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Porpax reticulata] >AER00140.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Porpax reticulata] >AER00143.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Porpax reticulata])

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-38
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVKD KLTYYTP+YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 2   ETKASVGFKAGVKDYKLTYYTPNYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 61

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++V +GEENQYIAY+ AYPLD FEEGSVTN
Sbjct: 62  TWTTVWTDGLTSLDRYKGRCYHIEVVSGEENQYIAYV-AYPLDLFEEGSVTN 111

[Close]

BLAST of CmaCh11G012110.1 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 159.1 bits (401), Expect = 2.5e-39
Identity = 86/112 (76.79%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 23  KTKASVGFKAGVKDSKLTYYTPSYETKDTDILAALRVTPQSGVPPEEVGAAVAAAESSTS 82
           +TKASVGFKAGVK+ KLTYYTP YETKDTDILAA RVTPQ GVPPEE GAAV AAESST 
Sbjct: 6   ETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAV-AAESSTG 65

Query: 83  TWTTVWTDELTSLDRYVTKDDVMDVPAGEENQYIAYLAAYPLDPFEEGSVTN 135
           TWTTVWTD LTSLDRY  +   ++   GEE Q+IAY+ AYPLD FEEGSVTN
Sbjct: 66  TWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQFIAYV-AYPLDLFEEGSVTN 115

The following BLAST results are available for this feature:

BLAST of CmaCh11G012110.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3BAN4	1.3e-40	80.36	Ribulose bisphosphate carboxylase large chain OS=Phalaenopsis aphrodite subsp. f...	[more]
P31202	1.7e-40	80.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salacia pallescens O...	[more]
P27066	1.7e-40	80.36	Ribulose bisphosphate carboxylase large chain OS=Glycine max OX=3847 GN=rbcL PE=...	[more]
P31183	2.2e-40	80.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Corynocarpus laeviga...	[more]
P27064	2.2e-40	80.36	Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL...	[more]

BLAST of CmaCh11G012110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J6KLP5	1.7e-38	81.25	Ribulose bisphosphate carboxylase large chain OS=Hexalectris nitida OX=646078 GN...	[more]
A0A5J6KHF5	1.7e-38	81.25	Ribulose bisphosphate carboxylase large chain OS=Hexalectris revoluta OX=142981 ...	[more]
A0A5J6KBS3	1.7e-38	81.25	Ribulose bisphosphate carboxylase large chain OS=Hexalectris nitida OX=646078 GN...	[more]
G8FKU2	2.8e-38	80.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Porpax reticulata OX...	[more]
U5YGB2	2.8e-38	82.14	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Pouzolzia mixta OX=9...	[more]

BLAST of CmaCh11G012110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
QEV85166.1	3.4e-38	81.25	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris revol...	[more]
QEV84828.1	3.4e-38	81.25	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris nitid...	[more]
QEV84619.1	3.4e-38	81.25	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hexalectris nitid...	[more]
AYF59981.1	5.8e-38	81.25	ribulose-1,5-bisphosphate carboxylase large subunit, partial [Desmodium tortuosu...	[more]
AER00139.1	5.8e-38	80.36	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Porpax r...	[more]

BLAST of CmaCh11G012110.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	2.5e-39	76.79	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 41..134 e-value: 3.4E-20 score: 72.4
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	3.30.70.150		coord: 25..134 e-value: 2.1E-28 score: 100.8
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 26..134
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 23..134
None	No IPR available	PANTHER	PTHR42704:SF7	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 23..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G012110	CmaCh11G012110	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G012110.1:exon:878	CmaCh11G012110.1:exon:878	exon
CmaCh11G012110.1:exon:877	CmaCh11G012110.1:exon:877	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G012110.1:cds	CmaCh11G012110.1:cds	CDS
CmaCh11G012110.1:cds	CmaCh11G012110.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G012110.1	CmaCh11G012110.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity