CmaCh11G003350.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G003350.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	STE20-like serine/threonine-protein kinase
Location	Cma_Chr11: 1674897 .. 1676368 (-)
Sequence length	1141
RNA-Seq Expression	CmaCh11G003350.1
Synteny	CmaCh11G003350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAAGAGAAAAGATCTCGATCAATTTAACGATGAGTTCTCGGATTTCTCCCTCTCGTCGCCTGCCTGGAAGATTCGCCGTCTGGTACTTCTTCCTACTCTTTGCTTTCGTGTTGTTGTTTCTTTAAATGGAGTTTGTGAAACTTTGTTCTGAGAATTTTTCTTCGATTTTCTAGGATGTTGGCTTACCGCCTATTATAGAAGAAGAACCGCCGGAAATTGCTGGTTTAAACGAAGAACGAATGGTGCCTGTAAATTATGTAGCAGGAGGGAGTGGTGTGAGGATTGAGGAATTGCCGGACGCTTCTTCTGTTGCTGCTGCTTCAGCTTGTGCTATGGAAGATCGCCCTCTCTGCGATAACCAAGAGAGGGCTATTGTTCTGTTTAAGCCTGTTAACACGTCTTTCTTGCAGTCTGATCCTCTTTCAGTCTCTGTTGATTCCGACATTATATCTGGCTTCAAGAGTAAGTACCGATTTCAACATAGTTTCTCCGGATTTTTCTCACTTCCGTTTCGATCTTTGAATTCTACCTTTAAACTACTTAGATATTGGATTGAGGAATGAATAACTGCTGAAAACGAAGAAAAGGTCTAGGGTTTAACCATTGTTGCTGAGAAACACTAATCGTTTAGTTCCTGTTGTTGGTATCTCAAAATGGACTGTTTAGATTGATTCTGATCTCTGTGTAACTGACAATTATCAGGCGATATTCTTCGTGAAAACCGTTATGTTGGGCGGCTGAAATTTGGTGAGGACGACGACGAAATGGGGACGGAGAACAAAAATCTTGCTGTTGTTCCTTGGGTTCCGCGGCTGCAGGTTCCTGCTTCGACGAACATGCATGTCCAACAAGAGGAGGCTCCTCAGTTGATGGAAGCTGAAGAAGTTGGAGAAGCGACAATGGACATTGAAGATGACAACTTAAGCAGTCAACAACACCCTTATGGCTATGGAGGAATGGATGGAGCTAACGCCATTCATCAATGGCGCCAACATCCCTGCATGATTCCGCAGCTGCCACAACAAACGTCCTCCCCCATAACATGGTTTCGATGATGGTATGGTATATACATAGGGAAAATTTACTATCTTTTGATCTCATGGGGTGCTAGATAATAGGATAATTTGCAGCAAATTTGACTTGAAGAACATATGGGTATAAATATAATGCCTTCGCTCTATTGTTCATCACCATGTGGCAGCTTTTTCTTGGGAAGTGATGATGCTTCTGCACGCATATGAGTTGCCTAGTTGAGAATTATGAGCTCATGTACAAATTTTTTCCCCACCTTCCAGAACTTCTTGACTGGAATCTAATGAATTAGAGTTATTCTACTTGATCTATGAGTATGGTATCCAAATTTTGATGAGATCATGATGGATAACACTACTTTTTTTTTTTAACTTTTAATTTTGTGCCTGTTGAAGTAATTGAACTTTAATAATAATTCACTAATTTATTTAA

mRNA sequence

ATGAAGATGAAGAGAAAAGATCTCGATCAATTTAACGATGAGTTCTCGGATTTCTCCCTCTCGTCGCCTGCCTGGAAGATTCGCCGTCTGGATGTTGGCTTACCGCCTATTATAGAAGAAGAACCGCCGGAAATTGCTGGTTTAAACGAAGAACGAATGGTGCCTGTAAATTATGTAGCAGGAGGGAGTGGTGTGAGGATTGAGGAATTGCCGGACGCTTCTTCTGTTGCTGCTGCTTCAGCTTGTGCTATGGAAGATCGCCCTCTCTGCGATAACCAAGAGAGGGCTATTGTTCTGTTTAAGCCTGTTAACACGTCTTTCTTGCAGTCTGATCCTCTTTCAGTCTCTGTTGATTCCGACATTATATCTGGCTTCAAGAGCGATATTCTTCGTGAAAACCGTTATGTTGGGCGGCTGAAATTTGGTGAGGACGACGACGAAATGGGGACGGAGAACAAAAATCTTGCTGTTGTTCCTTGGGTTCCGCGGCTGCAGGTTCCTGCTTCGACGAACATGCATGTCCAACAAGAGGAGGCTCCTCAGTTGATGGAAGCTGAAGAAGTTGGAGAAGCGACAATGGACATTGAAGATGACAACTTAAGCAGTCAACAACACCCTTATGGCTATGGAGGAATGGATGGAGCTAACGCCATTCATCAATGGCGCCAACATCCCTGCATGATTCCGCAGCTGCCACAACAAACGTCCTCCCCCATAACATGGTTTCGATGATGGTATGGTATATACATAGGGAAAATTTACTATCTTTTGATCTCATGGGGTGCTAGATAATAGGATAATTTGCAGCAAATTTGACTTGAAGAACATATGGGTATAAATATAATGCCTTCGCTCTATTGTTCATCACCATGTGGCAGCTTTTTCTTGGGAAGTGATGATGCTTCTGCACGCATATGAGTTGCCTAGTTGAGAATTATGAGCTCATGTACAAATTTTTTCCCCACCTTCCAGAACTTCTTGACTGGAATCTAATGAATTAGAGTTATTCTACTTGATCTATGAGTATGGTATCCAAATTTTGATGAGATCATGATGGATAACACTACTTTTTTTTTTTAACTTTTAATTTTGTGCCTGTTGAAGTAATTGAACTTTAATAATAATTCACTAATTTATTTAA

Coding sequence (CDS)

ATGAAGATGAAGAGAAAAGATCTCGATCAATTTAACGATGAGTTCTCGGATTTCTCCCTCTCGTCGCCTGCCTGGAAGATTCGCCGTCTGGATGTTGGCTTACCGCCTATTATAGAAGAAGAACCGCCGGAAATTGCTGGTTTAAACGAAGAACGAATGGTGCCTGTAAATTATGTAGCAGGAGGGAGTGGTGTGAGGATTGAGGAATTGCCGGACGCTTCTTCTGTTGCTGCTGCTTCAGCTTGTGCTATGGAAGATCGCCCTCTCTGCGATAACCAAGAGAGGGCTATTGTTCTGTTTAAGCCTGTTAACACGTCTTTCTTGCAGTCTGATCCTCTTTCAGTCTCTGTTGATTCCGACATTATATCTGGCTTCAAGAGCGATATTCTTCGTGAAAACCGTTATGTTGGGCGGCTGAAATTTGGTGAGGACGACGACGAAATGGGGACGGAGAACAAAAATCTTGCTGTTGTTCCTTGGGTTCCGCGGCTGCAGGTTCCTGCTTCGACGAACATGCATGTCCAACAAGAGGAGGCTCCTCAGTTGATGGAAGCTGAAGAAGTTGGAGAAGCGACAATGGACATTGAAGATGACAACTTAAGCAGTCAACAACACCCTTATGGCTATGGAGGAATGGATGGAGCTAACGCCATTCATCAATGGCGCCAACATCCCTGCATGATTCCGCAGCTGCCACAACAAACGTCCTCCCCCATAACATGGTTTCGATGA

Protein sequence

MKMKRKDLDQFNDEFSDFSLSSPAWKIRRLDVGLPPIIEEEPPEIAGLNEERMVPVNYVAGGSGVRIEELPDASSVAAASACAMEDRPLCDNQERAIVLFKPVNTSFLQSDPLSVSVDSDIISGFKSDILRENRYVGRLKFGEDDDEMGTENKNLAVVPWVPRLQVPASTNMHVQQEEAPQLMEAEEVGEATMDIEDDNLSSQQHPYGYGGMDGANAIHQWRQHPCMIPQLPQQTSSPITWFR

Homology

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BLAST of CmaCh11G003350.1 vs. TAIR 10
Match: AT5G35320.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-30
Identity = 105/266 (39.47%), Postives = 137/266 (51.50%), Query Frame = 0


Query: 1   MKMKRKDLDQFNDEFSDFSLSSPAWKIRRLDVGLPPIIEEEPPEIAGLNEERMVPVNYVA 60
           + MKRKD+D+ ND+FSDFSLSSPA KIRRLDV LPPI+EEE  EI               
Sbjct: 7   LSMKRKDIDRVNDDFSDFSLSSPARKIRRLDVDLPPIMEEE--EI--------------- 66

Query: 61  GGSGVRIEELPDASSVAAASACAMEDRPLCDNQERAIVLFKPVNTSFLQSDPLSVSVDSD 120
                   +LP   +VA      +E  P+  N ERAIVLFKP++  + Q    +V VD  
Sbjct: 67  --------DLPMQDTVAE----EIELEPV--NDERAIVLFKPLH--YHQPSSGNVFVDRH 126

Query: 121 IISGFKSDILRENRYVGRLKFGEDDDEMGTE--NKNLAVVPWVPRLQVPASTNMHVQQEE 180
           +ISGFK+  LR+           DD++   E  NK  AVV W P     + +    QQ  
Sbjct: 127 LISGFKNRFLRDVSIA-------DDNQYEDERLNKCQAVVCWNPSQSTYSQSIGTFQQPR 186

Query: 181 APQLMEAEEVGE------ATMDIEDDNLSS------------QQHPYGYGGMDGANAIHQ 240
             ++ E +E GE      A+ +IE+D  S+            Q+H YG+G       +H 
Sbjct: 187 TLEITELDETGEDVVMDDASNEIEEDTGSTSLSFPQQGQQQEQEHTYGFG-------LHP 225

Query: 241 WRQ-HPCMIPQLPQ--QTSSPITWFR 244
           W+Q   CMIPQLPQ   T +PITWFR
Sbjct: 247 WQQAQNCMIPQLPQVSTTPTPITWFR 225

The following BLAST results are available for this feature:

BLAST of CmaCh11G003350.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G003350.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35320.1	6.6e-30	39.47	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35510:SF1	DBH-LIKE MONOOXYGENASE	coord: 2..243
None	No IPR available	PANTHER	PTHR35510	DBH-LIKE MONOOXYGENASE	coord: 2..243

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G003350	CmaCh11G003350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G003350.1:exon:457	CmaCh11G003350.1:exon:457	exon
CmaCh11G003350.1:exon:456	CmaCh11G003350.1:exon:456	exon
CmaCh11G003350.1:exon:455	CmaCh11G003350.1:exon:455	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G003350.1:three_prime_utr	CmaCh11G003350.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G003350.1:cds	CmaCh11G003350.1:cds_3	CDS
CmaCh11G003350.1:cds	CmaCh11G003350.1:cds_2	CDS
CmaCh11G003350.1:cds	CmaCh11G003350.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G003350.1	CmaCh11G003350.1-protein	polypeptide