CmaCh10G004470.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G004470.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L35
Location	Cma_Chr10: 2033985 .. 2036107 (+)
Sequence length	709
RNA-Seq Expression	CmaCh10G004470.1
Synteny	CmaCh10G004470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTATTCACTTTATCCGCACAGCAGGCCGAGTTTGAGGTTCGTATAGATTGGCAAGAAGAAGAAAGACGAGACGCTTCCAAGTATCAGGAGCCATGGCATCTGCTTCGGCGTCGGTGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTATTTCCGTCCGGCTTCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCTTCCCACAACGTTTCCAGCTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCGAGTTCTCGAATTCATACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGTCTCTATTTCCCTCAATTCTCTGTGTATTTTTGGGATATTTTTGTATGGTTCAATTCTGGTTGGATTCTGATTAATTGAAGTTAATTCCAGTCTTCTAGATAGTCGGATATGTTTATTTTTTGTTTTAATCGAATTTGTATTATGATTCGAGAACGGCAGATTGAATTTTAAGTACCAATTCTAGACACTTACTGAAGGGGCTAGTGTCATTATTATTTTTGTTGAGAATGGTTGGGAGAAGAGTCCTACCTCGACTAATTAACGGGTGGATCATGGATTTATAAGTAAGAAATACATCTCTATTAATATGGAAGCATGACGGGTAAACCAAAAGTAAAGTATGAGAATGTATATTCAAAGTGGACAATATCATACCATTGTGGAGGGTCATGATTCCTAACATGGTATCAGAGTCACGCCCTTAACTTAGCCATGTCAATAGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAACTTGTAGTCAAAAGTGGCTCAAGTTTTTATTCGAGGGCTCTAGAGAAGTAGTCGAGTCTCAATTAAGGGGAGGTTGTTCAAGAGCTCCATACGTCTCAGGGAAGGCTCTATGAAGTACATCGTTCGAGAGGAGAATTGTTGAGGATTGTTAGGGGAAAAGTCTCACGTCGGATAATTAAAGAGTTGATCATGAGTTTATAAGTAGGAATACATCTCTACTGATATGAGGCCTTATGGGAAACTAAAAGTAAAACTATGTTCAAAGTGGACAATATCGTATAATTGTAGAGGGTGAATAGTAGTGATTCCTAACCTTGTATTCTCTTTCTCTTTCTTTGTATTGTAGTGTAATTTTTTTTCCTTTTGATTGGATTGTTTGGTGTGACTGGATAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGGTATGTCATCTTTACTTGTTTTTATTTTATGATTCTGTATCTGTAATGCGAAATTTCTAAACTTGTACCCTTGAGAGTTTTTCTGGGAGAGGGTTTATATAAATGGATCAAAACTTAGCCAATGCAGCCACCATTTTCAATCTCTATGCAACAAGTTATTTGACAAGAAAATAGCTTTGGTTTTGAATTTTCAGAATGTTGTACACAGCCTAGTTTTTATTGATTTATTGGTTGCGTCTGAGAGCAACAAAGGCAGTTCCTTTAGCCTTTTGTTCAAATTTGATTCGATCTAGATTGTTACCAACTGGTCGAGTCCTCTGATTTCCCCTGTGGGCATATAGATCTTATGGTTAATGAACTCTTTTACCAACAATATTCATGCCTAAGATTTTGTTATATGAACAAAGTGCCTTTTATAATACCAAAAAAGTGTGGTGAGTTGCTCTTGTAGTGCAAGGAAAATTGGCTAGTTCTCCGCATTTGTATATCTGGTTATGTTACCGAGTGTTTTCTTTGATTGGCTTCCGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGCCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCACCAAATGGAAAAATTCGATTGCTTAAAGATATTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAA

mRNA sequence

AAGCTATTCACTTTATCCGCACAGCAGGCCGAGTTTGAGGTTCGTATAGATTGGCAAGAAGAAGAAAGACGAGACGCTTCCAAGTATCAGGAGCCATGGCATCTGCTTCGGCGTCGGTGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTATTTCCGTCCGGCTTCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCTTCCCACAACGTTTCCAGCTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCGAGTTCTCGAATTCATACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGCCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCACCAAATGGAAAAATTCGATTGCTTAAAGATATTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAA

Coding sequence (CDS)

ATGGCATCTGCTTCGGCGTCGGTGTCCTTTGGTCTTAGGTTTTCCCCACTGTGCTCTCGCTCATCAGTTCGCGTCTCTCGTATTTCCGTCCGGCTTCCGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCTTCCCACAACGTTTCCAGCTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCGAGTTCTCGAATTCATACTCCCTTCACTGTTGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAATAGGCAGGCCAAGTAG

Protein sequence

MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

Homology

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BLAST of CmaCh10G004470.1 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.6e-33
Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           ++ AS +VSF     PL S S     ++S+R   S+  ++  LSSSH++S     L  K 
Sbjct: 4   LSMASVNVSF---CHPLRSSS----PKVSLR---SSVHFATSLSSSHSISGLRAVLPLKI 63

Query: 61  FHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 64  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 123

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           KLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 124 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

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BLAST of CmaCh10G004470.1 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-31
Identity = 94/157 (59.87%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 1   MASASASVSF---GLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGV--- 60
           MASA+A++SF    L  SP  +R S     IS+   +     +L LSSS ++SS  V   
Sbjct: 3   MASATATLSFKTPSLSLSPPSTRCSA-AQGISLTHFNKQLKSTLNLSSSSSISSSKVQPI 62

Query: 61  ALLQKPFHIAPS--SRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL 120
            L  K      S  S     FTV AAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL
Sbjct: 63  VLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL 122

Query: 121 YKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
            KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 AKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]

BLAST of CmaCh10G004470.1 vs. ExPASy Swiss-Prot
Match: Q8YRL9 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

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BLAST of CmaCh10G004470.1 vs. ExPASy Swiss-Prot
Match: Q3M7I2 (50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

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BLAST of CmaCh10G004470.1 vs. ExPASy Swiss-Prot
Match: B2J0D1 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSKTTLVHERDELNVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

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BLAST of CmaCh10G004470.1 vs. ExPASy TrEMBL
Match: A0A6J1JDG6 (50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.0e-73
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. ExPASy TrEMBL
Match: A0A6J1E327 (50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASA+ SFGLRF PLCSRSSV VSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSS-NKAYSLRLSSSHNVSSFGVALLQK 60
           MASAS +VSFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS N+S FGVALLQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
            FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152

[Close]

BLAST of CmaCh10G004470.1 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.3e-59
Identity = 125/151 (82.78%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASAS +VSFGLRFSPLCSR S RVS  SV L S NK  SL+LSSSHN+S FG+  LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR+
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of CmaCh10G004470.1 vs. ExPASy TrEMBL
Match: A0A0A0LYX0 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.9e-57
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASAS +VSFGLRFSPLCSR S RVS  SV + S NK  SL+LSSSHN+S FG   LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HI+P+S+I TPFTV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of CmaCh10G004470.1 vs. NCBI nr
Match: XP_022988597.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 8.2e-73
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP
Sbjct: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. NCBI nr
Match: KAG7023426.1 (50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASA+ SFGLRFSPLCSRSSVRVSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. NCBI nr
Match: KAG6589755.1 (50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.2 bits (700), Expect = 6.5e-70
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASA+ SFGL FSPLCSRSSVRVSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASATASFGLMFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. NCBI nr
Match: XP_022922051.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 271.6 bits (693), Expect = 4.2e-69
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASA+ SFGLRF PLCSRSSV VSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKP
Sbjct: 1   MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
           FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. NCBI nr
Match: XP_023516182.1 (50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 143/151 (94.70%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           MASASA+ SFGLRFSPLCSRSSVRVSR SVRLPSSNKAYSLRLSSSHN+S FGVAL+QKP
Sbjct: 1   MASASATASFGLRFSPLCSRSSVRVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALIQKP 60

Query: 61  FHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120
            HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
Sbjct: 61  CHIAPSSRIRTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK 151

[Close]

BLAST of CmaCh10G004470.1 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-34
Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = 0


Query: 1   MASASASVSFGLRFSPLCSRSSVRVSRISVRLPSSNKAYSLRLSSSHNVSSFGVALLQKP 60
           ++ AS +VSF     PL S S     ++S+R   S+  ++  LSSSH++S     L  K 
Sbjct: 4   LSMASVNVSF---CHPLRSSS----PKVSLR---SSVHFATSLSSSHSISGLRAVLPLKI 63

Query: 61  FHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120
             +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 64  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 123

Query: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           KLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 124 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

The following BLAST results are available for this feature:

BLAST of CmaCh10G004470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ55	8.6e-33	60.93	50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
P23326	2.8e-31	59.87	50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P...	[more]
Q8YRL9	4.6e-10	58.73	50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M7I2	4.6e-10	58.73	50S ribosomal protein L35 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
B2J0D1	5.1e-09	57.14	50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]

BLAST of CmaCh10G004470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDG6	4.0e-73	100.00	50S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111485794 PE=3 SV=1	[more]
A0A6J1E327	2.0e-69	95.36	50S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111430115 PE=3 SV=...	[more]
A0A6J1C550	1.2e-61	88.16	50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV...	[more]
A0A1S3B9R8	4.3e-59	82.78	50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1	[more]
A0A0A0LYX0	8.9e-57	81.46	50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1	[more]

BLAST of CmaCh10G004470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988597.1	8.2e-73	100.00	50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima]	[more]
KAG7023426.1	1.3e-70	96.69	50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6589755.1	6.5e-70	96.03	50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022922051.1	4.2e-69	95.36	50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata]	[more]
XP_023516182.1	1.6e-68	94.70	50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh10G004470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24090.1	6.1e-34	60.93	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001706	Ribosomal protein L35, non-mitochondrial	PRINTS	PR00064	RIBOSOMALL35	coord: 115..133 score: 37.84 coord: 100..114 score: 48.25 coord: 82..99 score: 61.11
IPR001706	Ribosomal protein L35, non-mitochondrial	TIGRFAM	TIGR00001	TIGR00001	coord: 81..143 e-value: 2.9E-23 score: 79.9
IPR001706	Ribosomal protein L35, non-mitochondrial	PANTHER	PTHR33343	54S RIBOSOMAL PROTEIN BL35M	coord: 25..150
IPR001706	Ribosomal protein L35, non-mitochondrial	HAMAP	MF_00514	Ribosomal_L35	coord: 80..143 score: 15.647649
IPR037229	Ribosomal protein L35 superfamily	GENE3D	4.10.410.60		coord: 82..144 e-value: 3.0E-20 score: 74.5
IPR037229	Ribosomal protein L35 superfamily	SUPERFAMILY	143034	L35p-like	coord: 81..143
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 81..137 e-value: 4.0E-20 score: 72.0
IPR018265	Ribosomal protein L35, conserved site	PROSITE	PS00936	RIBOSOMAL_L35	coord: 84..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G004470	CmaCh10G004470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004470.1:exon:820	CmaCh10G004470.1:exon:820	exon
CmaCh10G004470.1:exon:821	CmaCh10G004470.1:exon:821	exon
CmaCh10G004470.1:exon:822	CmaCh10G004470.1:exon:822	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004470.1:five_prime_utr	CmaCh10G004470.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004470.1:cds	CmaCh10G004470.1:cds	CDS
CmaCh10G004470.1:cds	CmaCh10G004470.1:cds_2	CDS
CmaCh10G004470.1:cds	CmaCh10G004470.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004470.1:three_prime_utr	CmaCh10G004470.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004470.1	CmaCh10G004470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding