CmaCh10G004210.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G004210.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Small nuclear ribonucleoprotein E
Location	Cma_Chr10: 1923268 .. 1926120 (-)
Sequence length	413
RNA-Seq Expression	CmaCh10G004210.1
Synteny	CmaCh10G004210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGCATCGGTCTCTGGACGTGGAGTGGAAGTGCTCTAGGGTTTACATTTCGTATCGAAGATTCTCCCACTGCCAAAACAAATTCGATAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCGATTGTACGCGCGGAATCTCTTCATTTTTCTTCCTTCCTTGATTATACTTTGGGCTGCCTTTATCTATTTCTGCGTCTTACTGATAATTTCCGGATGTCTTTTTTTTCTTTTTTCCTTTGATCACGGTGTCGCTGTATCTTTGGAACTAGAACTTGATATTCAGATTTCTCCAAAGTGTAAGAACTTACTTCCATTCCTAATTATCCACCTTTTTTTTTCTGGCCTAACTCGGTTTTCTGATTCGAGTTTGTAATCAATGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGTAAGGTTTTGTTTATTGCTGCTTACTATTTTCTTTTTATACTGGCTATTTACGTAATGCGGATTGAAGCCTACGTTTTCCTATACGTCGATCTTTTGGCATGTATTCATGATTGATAGATGCTCCAACTTTATTGTTGGACAATTTACTCTCTCATATGCTCCTTATAGAAATCCTCTGATTTCAGTGGAGCACAGGGCAAGAGTGTGTTAAAAATTTCTTCGATATCCTGGATAAAGACCTCAAGCTCCTACTCCACATCCACATCATGAATTTCCGCAAAATTTCTAGAGTTGAACAAATTCAATTGTGTAGGCGGTTTATTAGGTACAGGTAGAATTGGAACCTACTTGAAATTCATGTTACGTAATAAATGGGCATGCCTTCAAGATTGTGCTTTAGTATTTCGATTTCCTTTTACATTGCTGCCAAAAGTTACACACATGCTGGAAATTGGGTGAAATTTGGGACATAGCTTCAAATTGCCGCTCATGTTGGTTATCACCTAAACTCGCTCTTGGAATAGGAATGGATCATGGTACAGAGTTCTAATTTCATATTTCTTTGTGTAGTTAGTGAGTGTTATTTGAATCTCAGTTCTAAATAGATCAAGTCTCTTATGGAAAAATTTTCACGGTTAGAGTTATATCTCAGTATTCTTTCCAATTCAAACAGACCGTTGGGGTTGGAACTAGGTTTCCCTGAAACCTCATAATGCCAAAGGCAATGGTCAATTACTTCTATGATCCGCAGTTTTCTCCATGAAATTGTTTCATCTTCTGTTGCCGGAGCGCACACCTTGAAATGAAAATTGCTTTAAGCGATGTCCCCATGCCTGGGAATTGATTTCCATCGGTCTATTCCTCCATGAAGTTAGTTTATTCTTCCACATAAGGTTGTTGCGCCCTGTTCTTACTCGATTAAGATGGTTTCCTTTCTCTTGTGTGCGCAATTCTCCTCATCAATCTATGTAAAATGTGACCAGTTCTGCAGAAAACTTTTCCTACCAAGGACTGAACGCTGTTTTCAGAATTCAGACAGCAAGCATGTTTGGTCGTTATTCCTCTTGTGAACTCAGTGAATCGTCTCTTAACTTTTGATATTTAATTTAATGAAATAGCGTATTTCATGTCTCTTTCGTCTACTTCATCTTAAAAATTATTGCGATGCTAGGAAGCACAAACACTTTGCTCGACAAAGTGTCTGTGTTAGACACAAATATGTTTGGACACGCTCTCAACACTGGTCCAACACACAAAATTGCGTTTTTTTTTTTTTTTTTTAATAGCTAAGGACACGTCTCACACACCAGGGACACACCTAAACAACCTCAAACCTTTGAGACGGGACGGCACTGGGGTGAAGTTAATAGGGGGAAGAACGGAGGGAAATCACAAATGAAGGTGAAGAGAATAAATGAAGACGAGAGAATCCGTGGAGAAGAGAGCTTCGTGGGGTTTATTTCTAAAAGAAGTATAACTTTTTTATAACCTTTTATTTTGAGTCTGGCATGCTGGGCTTTTGTTCTTTATTGGGTTTCTTTATGTGGGCTTAGATGATTTAACTTATTGGTCATTTAATTTTTATGCACTATTTTAATTTGAACTTAAACTCAATGGGTACTTTTTCTTGATTCACGTTTTTAAAAAATAGTTAGTAAAAAAGTATAGTTTTTTCAGTTTGATTTTTTAATATTTTAAATAAAATTTAATTAAAATAACAGGTCCCCAACGCGTCTATGTCTATGTCCTACATTTTTAAAAATTGGTGTGTTGTCATGTCCATGTTGTTTCTGCGTCTGCGTCCATGCTTTTTAGTTGCAATGTTAGCTTATATGCCTCAGCTTTTCTGTAGTTTACATCCAAGATTATGTTCATGGATTATCTTGCACTACAAAATTTGAAATTTCTTGGCCCTTCGTTTGTTGTAATTACCTATGTTTTGGCTGATTTATTAAATGCTTTTATTATAACTTATAAAGGAGGTAGGCAGAGGAAGCTGGTTCTTTTATATTAAAGTTATCATTTTCTTGACCGAACAGGGATTTGATGAGTACATGAATTTAGTTCTTGATGATGCTGAGGAAGTTAATGTAAAGAAAAAGAGTAAAAAAGCACTCGGTATGTCTTCTTTCCCCCTCATTTGTTGTTGCCTTCCCTATACTTGAGTGGTGTTATCTGAAATGCCTTTCGTCTTTCCCTTTCAGGGAGGATTCTTCTCAAAGGAGACAATATAACGTTAATGATGAATACGTAAGTGAAATTGATCTTGCATTTCCTCTCCATTTCCCTTACACCAATTAACATAACTTTTTTTTTTCTTCAAAATTTCAGGGGAAAATGACAGACCACATTATTGAGATAGTTTTCACTTCCATCGTATGGCGTTATAGCTTT

mRNA sequence

TGAAGCATCGGTCTCTGGACGTGGAGTGGAAGTGCTCTAGGGTTTACATTTCGTATCGAAGATTCTCCCACTGCCAAAACAAATTCGATAGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCGATTAACTTGATATTCAGATTTCTCCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTTGATGATGCTGAGGAAGTTAATGTAAAGAAAAAGAGTAAAAAAGCACTCGGGAGGATTCTTCTCAAAGGAGACAATATAACGTTAATGATGAATACGGGAAAATGACAGACCACATTATTGAGATAGTTTTCACTTCCATCGTATGGCGTTATAGCTTT

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCGATTAACTTGATATTCAGATTTCTCCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTTGATGATGCTGAGGAAGTTAATGTAAAGAAAAAGAGTAAAAAAGCACTCGGGAGGATTCTTCTCAAAGGAGACAATATAACGTTAATGATGAATACGGGAAAATGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNTGK

Homology

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy TrEMBL
Match: A0A6J1JLU4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy TrEMBL
Match: A0A6J1E6Q3 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy TrEMBL
Match: A0A6J1ICX7 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy TrEMBL
Match: A0A6J1F0M2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111438400 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. ExPASy TrEMBL
Match: A0A0A0LUF2 (Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_1G418790 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKKALGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. NCBI nr
Match: XP_038880616.1 (small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 40  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 99

Query: 61  NVKKKSKKALGRILLKGDNITLMMNTGK 89
           NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 100 NVKKKSKKALGRILLKGDNITLMMNTGK 127

[Close]

BLAST of CmaCh10G004210.1 vs. NCBI nr
Match: XP_022921760.1 (small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_022988524.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita maxima] >XP_023516210.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6589730.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKKALGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. NCBI nr
Match: XP_022932078.1 (small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023520877.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >XP_023520878.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6607609.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 5.9e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKK+LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. NCBI nr
Match: XP_004146294.1 (small nuclear ribonucleoprotein E [Cucumis sativus] >XP_031736171.1 small nuclear ribonucleoprotein E [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 7.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKKALGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. NCBI nr
Match: XP_008453647.1 (PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453648.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453649.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          NVKKKSKKALGRILLKGDNITLMMN GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          ++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 89
          ++KKK++K LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]

BLAST of CmaCh10G004210.1 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALG 72
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]

BLAST of CmaCh10G004210.1 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMMNTG 88
           +ILL G+NI +++  G
Sbjct: 70 DQILLNGNNIAILVPGG 82

The following BLAST results are available for this feature:

BLAST of CmaCh10G004210.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUI2	4.9e-28	71.60	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	4.9e-28	71.60	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	4.9e-28	71.60	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	4.9e-28	71.60	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]
A1XQR9	4.9e-28	71.60	Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1	[more]

BLAST of CmaCh10G004210.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLU4	1.3e-39	100.00	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE...	[more]
A0A6J1E6Q3	1.3e-39	100.00	Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 ...	[more]
A0A6J1ICX7	2.9e-39	98.86	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE...	[more]
A0A6J1F0M2	2.9e-39	98.86	Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111438400 ...	[more]
A0A0A0LUF2	3.7e-39	98.86	Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_1G418790 PE=...	[more]

BLAST of CmaCh10G004210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880616.1	2.7e-39	100.00	small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida]	[more]
XP_022921760.1	2.7e-39	100.00	small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_02298...	[more]
XP_022932078.1	5.9e-39	98.86	small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 smal...	[more]
XP_004146294.1	7.7e-39	98.86	small nuclear ribonucleoprotein E [Cucumis sativus] >XP_031736171.1 small nuclea...	[more]
XP_008453647.1	1.0e-38	98.86	PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453648.1...	[more]

BLAST of CmaCh10G004210.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18740.1	9.7e-40	90.91	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	9.7e-40	90.91	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	5.3e-30	88.73	Small nuclear ribonucleoprotein family protein	[more]
AT5G48870.1	1.6e-05	35.06	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 19..85 e-value: 1.5E-17 score: 74.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 20..83 e-value: 3.8E-18 score: 65.0
None	No IPR available	GENE3D	2.30.30.100		coord: 1..86 e-value: 8.7E-42 score: 142.9
None	No IPR available	PANTHER	PTHR11193:SF10	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..87
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..87
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 7..85 e-value: 1.87925E-51 score: 153.864
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 12..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G004210	CmaCh10G004210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004210.1:exon:297	CmaCh10G004210.1:exon:297	exon
CmaCh10G004210.1:exon:296	CmaCh10G004210.1:exon:296	exon
CmaCh10G004210.1:exon:295	CmaCh10G004210.1:exon:295	exon
CmaCh10G004210.1:exon:294	CmaCh10G004210.1:exon:294	exon
CmaCh10G004210.1:exon:293	CmaCh10G004210.1:exon:293	exon
CmaCh10G004210.1:exon:292	CmaCh10G004210.1:exon:292	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004210.1:three_prime_utr	CmaCh10G004210.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004210.1:cds	CmaCh10G004210.1:cds_6	CDS
CmaCh10G004210.1:cds	CmaCh10G004210.1:cds_5	CDS
CmaCh10G004210.1:cds	CmaCh10G004210.1:cds_4	CDS
CmaCh10G004210.1:cds	CmaCh10G004210.1:cds_3	CDS
CmaCh10G004210.1:cds	CmaCh10G004210.1:cds_2	CDS
CmaCh10G004210.1:cds	CmaCh10G004210.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004210.1:five_prime_utr	CmaCh10G004210.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G004210.1	CmaCh10G004210.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding