CmaCh10G002600.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G002600.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nuclear factor Y, subunit B13
Location	Cma_Chr10: 1156363 .. 1159837 (-)
Sequence length	763
RNA-Seq Expression	CmaCh10G002600.1
Synteny	CmaCh10G002600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTCCCTCCACCTCGATCGCCTCCTTCGATTCCGGTCTTCTTCTATCGGTGGGATCGCCGTCGTCATTTTCCGCTTTTGCGTATTTATTTTTTCCGTTGGCTTCTGGGGCGCCGTACGTTCCGATCTCCTCCTCTTCCTCTGCATCGTTTGTCTTAAATTTTCCAGAATTTGTTTGTATTCTTTATGTCCGCGGTTGGGGTTCTTTTTTCCTCTGATTTTTGTGTGTCTGTTCTTTATGTTGCAGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGGTACTTGCAATTTCCGCGGTGGTTTTTGGTGTCTTTGTGTGTTTTTTGGGGGTATTTTCCCCCATAGTATATTGAATCTTGATGAGATGATTCATGGACTAATTTGGTGTTTCTTTAACTATCGAACAATAATTTTGATTTTACGGATTCTCTGTAATTCTTGAAGGATCGAATTGTGGGTTCAAGTCGATGTCTGGAAAATTTATATTTTTTGACTTGAACGATTATGGTACCGTTAATTATCGTTTCCACTAGAGAAGGATTAAGCTTGGTGTTTAGCTATTTTTTCTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCGACCCGGTTGCGGGGCGCGGCAATTTTTGGTGGGAAATTGAAATTAGATAATTGACAAGAAGAGTTCATGGAAGAAAACCCTTTGCTTGTTTTTCTTTTCAGTCTTTCTGTGGGGTTAAGCGAGTGACTAGTATGCCGTATGCCATAATTAAATCTGGATGCCTGAGTCTCAGTTCATCTGTCCTCACTGTAATGTGTTCACGTTCTGTAAACATAGATTGATTTCTACGGTATCATTCATGTTTTTAGCTTGCATCCCACTTCTGCTACATGAATTACCAATCGCTGAGTTTCCAAAACTTATTTTAAGTATTCTATGTAAGATGGTAGAGTTTCCAAAAAGAGTCGGCTTGTCTTTTGTGCTGCAATTTCATTTTACTTCGAGGCTTTTCCCCTTTCTTCTTTGTCCTTCGCTTTTTTTGAGCCAGTTTTATTTTCTTTTTCTTGTTCAGCTTTCAAGCTATCTTCTTTCATAAGAAAGTAGCTTCTGTGGCCACTTTTATGTTTCCAAATGTTAGAGGTTCCTCTACTCCATGTCCTTTTTCTTTCAGTTTTCTTAGCTTAGATGAATTCGTTTAAACGATCATATGATGTATTTTGGTGACATAATATGGCTCCCTTCCTTTTACAAGAAAAGTAATTGGACATCATTTAAATGCTTGTGCAGTTGCTGAAGTTTGTCTTGGTTTTGGTTTGTTCTGGGGATTCAAATCTTCATTTTTTGTTCGAGTTTATAGCGTTTTCACCAGTTGACCTATGCTTAGGGTAGCAAGTGTTTTTGTTTTGTAAACCATAATTTTGCATTTCCCTGTCTTTGTTTAGGGTTATTAAATTTATGTTTTGTTTATTTTTTCTTTTTCAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGGTGAGAATATCTTGATTTGCCATTTTCTTTGTATATTTTAACATTTTGTGTTGGTCGCATGTACTACTGTTAGTGTCCGTTTGTGGTTCTATTATTCTTCCAACAATAATGGCCAGTGCTTGTCTTCAGGCATAGCTTTTTGTTGTACTATTTTATTGTTAAGTTGATTTTTTGTACCTTTTTTTACTGTTGTCACCACTCCCCCTACCCCCACCCCACACACACACACACACATACACACACAAACCAGCTCTTTAAGGTGGTGGCAGGTTTTTATTGCTGACCAATTATCACTTCTTACTCAAGAATTGCACTCTTCGTTTTGGTGTTCTTGCAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTCTATGGACTATCCAAGTTTCCTTTATATTCTTAAAAATATAGACTTTTATGTGTTGCTTGTTATTATGTTTTGGGAAAGTATACGCTAGCATTTCTTGTTTACCATCCAGCTCCGTGAAACTCAAAATTTCCATTCTGTAGAAGTTGATTTCATTATTGCTTTATATAGCTCTACAACTTAAGAACCAAATCATAAAATAAATGAATGTTCTTCAGTGAAATAATAATTTCAGTGACCCAACTATACCTTACCAATAATATGCTCCTTGTCTATTTAATTGGTTTGCTGTGCGTACCATTCTGATCATGCAGTCATTTTAACCCTCTTTTTTATTATCTTGTTTACTTTAAGCACTGCTCATATCTTCCTATCTAAATCTATAAATACTTTCAGGACAGAATTTATTTTGAATCTACTCTGCCTTCTTATATATTTGACCCCAGGCATGGGTCAAACATTAACTAGCTCTGACAGAAAATAGTTTCCTGCTATTTTATAGAAATGGAGGAGATAAATCGCAATATATGTTAATAATGTCATGTGGAGTTTGATTGCATTTAAGAACACTAGGGTGAAAGTCCTTTTTAGTTGGAACTTTTCGTTCTTGTGTTTGAAGAAGATTGATCTATACAGCTTTTGCTTGGCTACTTCTACATTATGTCTGCTTTTGGACTTACACGTATGTTTACATATATGATCAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGGTAATGCTTCGGTATATTTGCTATAGTACCTTTTCAATGAATTGATTGAAGTGGCTGAGCATATAGAAATTTTCTGTGAGGGAGAGTATCTATCTTAATTTGTTCCTTAAAGAGGATCCTTCTCTATCATTCTCATAATTGGGTCATGAAATTTAGTTTCAACTCAAACATGAGTGTCTCAAGACAACTCAAAGCACTAACATTTTTTCTTTTCTCTCTGTCGAGAAATTTCCGCAGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAATTTTAGGATCTTTATTTTCTTCAACCGTAGGCAAGATTCCTTGACCCTTCCATATGTGCCTCAAATATGCCGTGTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTCTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATTTGCGGATCCATGTCTAGTTAATACAAGTAGTGACTGTTTAAATCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTC

mRNA sequence

ATGCCCTTCCCTCCACCTCGATCGCCTCCTTCGATTCCGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGAAATTTCCGCAGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAATTTTAGGATCTTTATTTTCTTCAACCGTAGGCAAGATTCCTTGACCCTTCCATATGTGCCTCAAATATGCCGTGTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTCTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATTTGCGGATCCATGTCTAGTTAATACAAGTAGTGACTGTTTAAATCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTC

Coding sequence (CDS)

ATGCCCTTCCCTCCACCTCGATCGCCTCCTTCGATTCCGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGAAATTTCCGCAGCAAGACTCGTTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA

Protein sequence

MPFPPPRSPPSIPSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES

Homology

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BLAST of CmaCh10G002600.1 vs. ExPASy Swiss-Prot
Match: P49592 (Protein Dr1 homolog OS=Arabidopsis thaliana OX=3702 GN=DR1 PE=1 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.2e-63
Identity = 127/160 (79.38%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VC+KE+KRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH++ETM    QD+ +  KW+ GA
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETM----QDTQRSVKWNPGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           +MTEEEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 QMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

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BLAST of CmaCh10G002600.1 vs. ExPASy Swiss-Prot
Match: Q55DJ5 (Protein Dr1 homolog OS=Dictyostelium discoideum OX=44689 GN=dr1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-27
Identity = 66/146 (45.21%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 29  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 88
           +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C +E+KRTI
Sbjct: 8   EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTI 67

Query: 89  APEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEALAE 148
           A EHV+KAL  LGFS+Y ++V   Y++H+ E        S    K+ N  + T E+ + E
Sbjct: 68  AAEHVIKALTELGFSDYTQKVSDVYDKHKLEV----STKSKSSKKFENLGKPT-EQLIRE 127

Query: 149 QQRMFAEARARMNGSNTAPKQPEPEQ 175
           QQ +FA+AR+    S  A +  + +Q
Sbjct: 128 QQLLFAKARSAFQASPEAQQLQQLQQ 148

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BLAST of CmaCh10G002600.1 vs. ExPASy Swiss-Prot
Match: O14348 (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ncb2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 60/141 (42.55%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 26  GKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEK 85
           G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C KE K
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63

Query: 86  RTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEA 145
           +TIA EH++KALE L F EYI E      +H+ +     Q++  K       + ++ +E 
Sbjct: 64  KTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQ-----QKNREKKSSKFEQSGVSRDEL 123

Query: 146 LAEQQRMFAEARARMNGSNTA 167
           L +Q+ + + AR R    N A
Sbjct: 124 LRQQEELLSRARERFKNQNIA 139

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BLAST of CmaCh10G002600.1 vs. ExPASy Swiss-Prot
Match: B0Y0F3 (NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=nctB PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 28  SKEDASLPKATMTKIIKEMLPPD--VRVARDAQDLLIECCVEFINLVSSESNEVCSKEEK 87
           S +D SLPKAT+ KII E+LPP      ++DA+DLL+ECCVEFI L+SSE+N++  KE K
Sbjct: 8   SNDDLSLPKATVQKIITEILPPSSGQTFSKDARDLLMECCVEFITLISSEANDISEKEAK 67

Query: 88  RTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEA 147
           +TIA EHV +AL  LGF +YI EV A  E+H+ E +K  ++   K       + +TEEE 
Sbjct: 68  KTIACEHVERALRDLGFGDYIPEVLAVAEEHK-EQLKSREKKQSK----MEQSGLTEEEL 127

Query: 148 LAEQQRMFAEARARMNGS 164
           L +QQ +F  A  + N +
Sbjct: 128 LRQQQELFRSATEKYNAA 140

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BLAST of CmaCh10G002600.1 vs. ExPASy Swiss-Prot
Match: Q4WFF8 (NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=nctB PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 28  SKEDASLPKATMTKIIKEMLPPD--VRVARDAQDLLIECCVEFINLVSSESNEVCSKEEK 87
           S +D SLPKAT+ KII E+LPP      ++DA+DLL+ECCVEFI L+SSE+N++  KE K
Sbjct: 8   SNDDLSLPKATVQKIITEILPPSSGQTFSKDARDLLMECCVEFITLISSEANDISEKEAK 67

Query: 88  RTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGAEMTEEEA 147
           +TIA EHV +AL  LGF +YI EV A  E+H+ E +K  ++   K       + +TEEE 
Sbjct: 68  KTIACEHVERALRDLGFGDYIPEVLAVAEEHK-EQLKSREKKQSK----MEQSGLTEEEL 127

Query: 148 LAEQQRMFAEARARMNGS 164
           L +QQ +F  A  + N +
Sbjct: 128 LRQQQELFRSATEKYNAA 140

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BLAST of CmaCh10G002600.1 vs. ExPASy TrEMBL
Match: A0A6J1JII3 (protein Dr1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.6e-81
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of CmaCh10G002600.1 vs. ExPASy TrEMBL
Match: A0A6J1E503 (protein Dr1 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430003 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.6e-81
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of CmaCh10G002600.1 vs. ExPASy TrEMBL
Match: A0A6J1C3I2 (protein Dr1 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007097 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR ETMK  QQDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNG+NTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGNNTAPKQPEPEQSLES 160

[Close]

BLAST of CmaCh10G002600.1 vs. ExPASy TrEMBL
Match: A0A6J1JDU1 (protein Dr1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.1e-77
Identity = 156/160 (97.50%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM    QDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM----QDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

[Close]

BLAST of CmaCh10G002600.1 vs. ExPASy TrEMBL
Match: A0A6J1E1R3 (protein Dr1 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430003 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.1e-77
Identity = 156/160 (97.50%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM    QDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM----QDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

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BLAST of CmaCh10G002600.1 vs. NCBI nr
Match: XP_022921863.1 (protein Dr1 homolog isoform X1 [Cucurbita moschata] >XP_022987314.1 protein Dr1 homolog isoform X1 [Cucurbita maxima] >XP_023516546.1 protein Dr1 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of CmaCh10G002600.1 vs. NCBI nr
Match: KAG6589570.1 (Protein Dr1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.1 bits (780), Expect = 4.1e-79
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 14  SRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVS 73
           S+RFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVS
Sbjct: 36  SQRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVS 95

Query: 74  SESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGK 133
           SESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM    QDSLKGGK
Sbjct: 96  SESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM----QDSLKGGK 155

Query: 134 WSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           WSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 156 WSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 196

[Close]

BLAST of CmaCh10G002600.1 vs. NCBI nr
Match: KAG7023258.1 (Protein Dr1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 159/167 (95.21%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 12  IPSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL 71
           + S+RF+MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL
Sbjct: 2   LQSQRFNMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL 61

Query: 72  VSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKG 131
           VSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM    QDSLKG
Sbjct: 62  VSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETM----QDSLKG 121

Query: 132 GKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           GKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 122 GKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 164

[Close]

BLAST of CmaCh10G002600.1 vs. NCBI nr
Match: XP_038879126.1 (protein Dr1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 157/160 (98.12%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR ETMK  QQDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKLLQQDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of CmaCh10G002600.1 vs. NCBI nr
Match: XP_022134978.1 (protein Dr1 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 3.8e-77
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHR ETMK  QQDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKSLQQDSLKGGKWSNGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           EMTEEEALAEQQRMFAEARARMNG+NTAPKQPEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGNNTAPKQPEPEQSLES 160

[Close]

BLAST of CmaCh10G002600.1 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-64
Identity = 127/160 (79.38%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VC+KE+KRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH++ETM    QD+ +  KW+ GA
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETM----QDTQRSVKWNPGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           +MTEEEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 QMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of CmaCh10G002600.1 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-64
Identity = 127/160 (79.38%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VC+KE+KRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH++ETM    QD+ +  KW+ GA
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETM----QDTQRSVKWNPGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           +MTEEEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 QMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of CmaCh10G002600.1 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 240.7 bits (613), Expect = 8.8e-64
Identity = 126/160 (78.75%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VC+KE+KRTIAPEHVLKAL+VLGF EYIEEVYAAYEQH++ETM     D+ +  KW+ GA
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETM-----DTQRSVKWNPGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 179
           +MTEEEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 QMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 155

[Close]

BLAST of CmaCh10G002600.1 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-63
Identity = 127/153 (83.01%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VC+KE+KRTIAPEHVLKAL+VLGF EY+EEVYAAYEQH++ETM    QDS +  K ++GA
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETM----QDSQRSVKMNSGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPE 172
           EMTEEEA AEQQRMFAEARARMNG  T P QPE
Sbjct: 121 EMTEEEAAAEQQRMFAEARARMNGGVTVP-QPE 148

[Close]

BLAST of CmaCh10G002600.1 vs. TAIR 10
Match: AT5G08190.2 (nuclear factor Y, subunit B12 )

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-62
Identity = 126/153 (82.35%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 19  MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 78
           M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 79  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMKFPQQDSLKGGKWSNGA 138
           VC+KE+KRTIAPEHVLKAL+VLGF EY+EEVYAAYEQH++ETM     DS +  K ++GA
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETM-----DSQRSVKMNSGA 120

Query: 139 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPE 172
           EMTEEEA AEQQRMFAEARARMNG  T P QPE
Sbjct: 121 EMTEEEAAAEQQRMFAEARARMNGGVTVP-QPE 147

The following BLAST results are available for this feature:

BLAST of CmaCh10G002600.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49592	3.2e-63	79.38	Protein Dr1 homolog OS=Arabidopsis thaliana OX=3702 GN=DR1 PE=1 SV=1	[more]
Q55DJ5	3.7e-27	45.21	Protein Dr1 homolog OS=Dictyostelium discoideum OX=44689 GN=dr1 PE=3 SV=1	[more]
O14348	1.7e-24	42.55	Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 97...	[more]
B0Y0F3	3.0e-24	47.83	NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain...	[more]
Q4WFF8	3.0e-24	47.83	NCT transcriptional regulatory complex subunit B OS=Neosartorya fumigata (strain...	[more]

BLAST of CmaCh10G002600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JII3	3.6e-81	100.00	protein Dr1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 ...	[more]
A0A6J1E503	3.6e-81	100.00	protein Dr1 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430003 PE=...	[more]
A0A6J1C3I2	1.8e-77	97.50	protein Dr1 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007097 PE...	[more]
A0A6J1JDU1	9.1e-77	97.50	protein Dr1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484903 PE=4 ...	[more]
A0A6J1E1R3	9.1e-77	97.50	protein Dr1 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430003 PE=...	[more]

BLAST of CmaCh10G002600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921863.1	7.4e-81	100.00	protein Dr1 homolog isoform X1 [Cucurbita moschata] >XP_022987314.1 protein Dr1 ...	[more]
KAG6589570.1	4.1e-79	96.97	Protein Dr1-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7023258.1	1.5e-78	95.21	Protein Dr1-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038879126.1	1.0e-77	98.13	protein Dr1 homolog isoform X1 [Benincasa hispida]	[more]
XP_022134978.1	3.8e-77	97.50	protein Dr1 homolog isoform X1 [Momordica charantia]	[more]

BLAST of CmaCh10G002600.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23090.2	2.3e-64	79.38	nuclear factor Y, subunit B13	[more]
AT5G23090.1	2.3e-64	79.38	nuclear factor Y, subunit B13	[more]
AT5G23090.4	8.8e-64	78.75	nuclear factor Y, subunit B13	[more]
AT5G08190.1	2.5e-63	83.01	nuclear factor Y, subunit B12	[more]
AT5G08190.2	1.3e-62	82.35	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 22..167 e-value: 6.6E-41 score: 141.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 30..164
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 32..97 e-value: 3.6E-22 score: 78.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..178
IPR044255	Protein Dr1 homolog	PANTHER	PTHR47173	PROTEIN DR1 HOMOLOG	coord: 19..177

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G002600	CmaCh10G002600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G002600.1:exon:176	CmaCh10G002600.1:exon:176	exon
CmaCh10G002600.1:exon:175	CmaCh10G002600.1:exon:175	exon
CmaCh10G002600.1:exon:174	CmaCh10G002600.1:exon:174	exon
CmaCh10G002600.1:exon:173	CmaCh10G002600.1:exon:173	exon
CmaCh10G002600.1:exon:172	CmaCh10G002600.1:exon:172	exon
CmaCh10G002600.1:exon:171	CmaCh10G002600.1:exon:171	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G002600.1:three_prime_utr	CmaCh10G002600.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G002600.1:cds	CmaCh10G002600.1:cds_6	CDS
CmaCh10G002600.1:cds	CmaCh10G002600.1:cds_5	CDS
CmaCh10G002600.1:cds	CmaCh10G002600.1:cds_4	CDS
CmaCh10G002600.1:cds	CmaCh10G002600.1:cds_3	CDS
CmaCh10G002600.1:cds	CmaCh10G002600.1:cds_2	CDS
CmaCh10G002600.1:cds	CmaCh10G002600.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G002600.1	CmaCh10G002600.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity