CmaCh10G000330.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G000330.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CASP-like protein
Location	Cma_Chr10: 118583 .. 119633 (-)
Sequence length	969
RNA-Seq Expression	CmaCh10G000330.1
Synteny	CmaCh10G000330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACATTTCATTTCTTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCATAATAATCTAATATGCCCGACAATAATGTCGAATTGGAAGCCAAGTCCCAGGGCCTCCATGCCAAACTCTACCTCTCTTCCCAGATTATCCTCAGAGCTTCGGTAATTTCCTCCACATTGGCCGCCACCTGGACCCTCATCACCGCCAAGCAATCCGTCGTCATCTTCGGCTTCACTTTGGACGCCCGATACAGCTACTCCTCTGCTTTCAAGTAACTCCCTGCTCCCTGCTCCCTACTCCCTACTCTTTTTTGTTTTCCATATATTTGATCCAAAATTAATTTTATGGTGCAGATTCTTTGCCATAGCCAACGCTGTTGCCTGTGGCTTCTGTCTTCTGTCCGTGTGCTTTGTTTTCATATCAACTCGGCAGTTGGCGTTGGGGAGCCGTCAAAGAAACTTCTTCTTCTTTGTTCACGATTTGTTGATGATGGGATTGGTGCTGAGTGGATGCGCTGCTGCCACCGCCATCGGGTTCGTGGGGAGGTACGGGAACACCCACACAGGGTGGTCGCCCATCTGTGACCAATTCGGCAAGTTTTGCAATCGCATCACCATTTCCATCGCCATCTCTTATTTTGCTGTGCTTTGCCTCCTCATACTCACCATCATCTCTGCAAATCCAACCAAACTCCAACGCTAATTTGGCCCGTTTTGTTGTGTGAACTCCGGTCAGAAATTTGGGAATGGCGAGGTTTGGTTAATGGGTTTAGTGATGATGTGTGCATTTTCCATCTTCTTTGTCCTTACCTTCTGTGTTGCAGCCGCATAACTGATGTTTTTGGTTTTTTCTCATTCTCATAAATTTGCTTTCTACCTTTCTTCCTTTTACTAATTAATTGCATAATATAACATACTTTCTACCTTCAATTCACTTCAACGTGGTTTCTTTTTTTTAATACTATTTTCAGAGTGCCCATTTTTTTCCAGACCAAACCAACCACATAATATATATGTGTATATATATATTCAAAAAAAATATGTGGGCGCAAGCAAC

mRNA sequence

CAACATTTCATTTCTTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCATAATAATCTAATATGCCCGACAATAATGTCGAATTGGAAGCCAAGTCCCAGGGCCTCCATGCCAAACTCTACCTCTCTTCCCAGATTATCCTCAGAGCTTCGGTAATTTCCTCCACATTGGCCGCCACCTGGACCCTCATCACCGCCAAGCAATCCGTCGTCATCTTCGGCTTCACTTTGGACGCCCGATACAGCTACTCCTCTGCTTTCAAATTCTTTGCCATAGCCAACGCTGTTGCCTGTGGCTTCTGTCTTCTGTCCGTGTGCTTTGTTTTCATATCAACTCGGCAGTTGGCGTTGGGGAGCCGTCAAAGAAACTTCTTCTTCTTTGTTCACGATTTGTTGATGATGGGATTGGTGCTGAGTGGATGCGCTGCTGCCACCGCCATCGGGTTCGTGGGGAGGTACGGGAACACCCACACAGGGTGGTCGCCCATCTGTGACCAATTCGGCAAGTTTTGCAATCGCATCACCATTTCCATCGCCATCTCTTATTTTGCTGTGCTTTGCCTCCTCATACTCACCATCATCTCTGCAAATCCAACCAAACTCCAACGCTAATTTGGCCCGTTTTGTTGTGTGAACTCCGGTCAGAAATTTGGGAATGGCGAGGTTTGGTTAATGGGTTTAGTGATGATGTGTGCATTTTCCATCTTCTTTGTCCTTACCTTCTGTGTTGCAGCCGCATAACTGATGTTTTTGGTTTTTTCTCATTCTCATAAATTTGCTTTCTACCTTTCTTCCTTTTACTAATTAATTGCATAATATAACATACTTTCTACCTTCAATTCACTTCAACGTGGTTTCTTTTTTTTAATACTATTTTCAGAGTGCCCATTTTTTTCCAGACCAAACCAACCACATAATATATATGTGTATATATATATTCAAAAAAAATATGTGGGCGCAAGCAAC

Coding sequence (CDS)

ATGCCCGACAATAATGTCGAATTGGAAGCCAAGTCCCAGGGCCTCCATGCCAAACTCTACCTCTCTTCCCAGATTATCCTCAGAGCTTCGGTAATTTCCTCCACATTGGCCGCCACCTGGACCCTCATCACCGCCAAGCAATCCGTCGTCATCTTCGGCTTCACTTTGGACGCCCGATACAGCTACTCCTCTGCTTTCAAATTCTTTGCCATAGCCAACGCTGTTGCCTGTGGCTTCTGTCTTCTGTCCGTGTGCTTTGTTTTCATATCAACTCGGCAGTTGGCGTTGGGGAGCCGTCAAAGAAACTTCTTCTTCTTTGTTCACGATTTGTTGATGATGGGATTGGTGCTGAGTGGATGCGCTGCTGCCACCGCCATCGGGTTCGTGGGGAGGTACGGGAACACCCACACAGGGTGGTCGCCCATCTGTGACCAATTCGGCAAGTTTTGCAATCGCATCACCATTTCCATCGCCATCTCTTATTTTGCTGTGCTTTGCCTCCTCATACTCACCATCATCTCTGCAAATCCAACCAAACTCCAACGCTAA

Protein sequence

MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKLQR

Homology

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy Swiss-Prot
Match: B9RA90 (CASP-like protein 1F1 OS=Ricinus communis OX=3988 GN=RCOM_1504680 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.5e-43
Identity = 94/179 (52.51%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 5   NVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSS 64
           NVE +  S     KL++ +QI LR   I +TLAATW ++T KQS+    F + A+Y+YSS
Sbjct: 3   NVEDKYNSPLKSQKLFIGAQICLRIVTIGATLAATWIMVTDKQSITFGDFVMVAKYNYSS 62

Query: 65  AFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRN----FFFFVHDLLMMGLVLSGC 124
           AFKFF +AN +AC   ++S+ F+       ALG    N    F  F+HDLLMM LVL+GC
Sbjct: 63  AFKFFVLANVIACACSVVSLLFL------CALGRYSSNPGHVFLLFLHDLLMMSLVLAGC 122

Query: 125 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTK 180
           +AATAIGF+G+YGNT +GW PICDQFG+FCNR TIS+ +SY +++CLLILT+ SAN ++
Sbjct: 123 SAATAIGFLGKYGNTKSGWMPICDQFGQFCNRGTISMMLSYLSMVCLLILTVTSANKSR 175

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy Swiss-Prot
Match: A7PHN8 (CASP-like protein 1F1 OS=Vitis vinifera OX=29760 GN=VIT_17s0000g00560 PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-41
Identity = 94/178 (52.81%), Postives = 125/178 (70.22%), Query Frame = 0


Query: 8   LEAKSQ-----GLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSY 67
           +EAK Q     G H KL+L + I LR   +++TL A W +IT+KQ+V ++G  ++A+YSY
Sbjct: 29  IEAKFQQNPPLGTH-KLFLGAHICLRILTVTATLTAAWMMITSKQTVEVYGIQVEAKYSY 88

Query: 68  SSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFF-FVHDLLMMGLVLSGCA 127
           SSAFKFF+ ANA+ACG    SV  +F +      GS    FFF F+HDL MM LVL+GCA
Sbjct: 89  SSAFKFFSYANAIACG---CSVLTLFPAFSLFYRGSTPMKFFFLFLHDLCMMSLVLAGCA 148

Query: 128 AATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTK 180
           AATAIG+VGRYGN H GW  ICDQF ++CNRI +S+  SY A + +L+LTI+SAN ++
Sbjct: 149 AATAIGYVGRYGNNHAGWMAICDQFDEYCNRIRLSLMFSYLAFVFILMLTIMSANKSR 202

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy Swiss-Prot
Match: B9IFI5 (CASP-like protein 1F1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_824792 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-39
Identity = 87/180 (48.33%), Postives = 118/180 (65.56%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60
           MP+N  +          KL++  QI  R   I++++A++W +IT+KQ + I G  LDARY
Sbjct: 1   MPNNEAKFSVNQPLKTQKLFIGVQIFFRIVAIAASVASSWLMITSKQVIDIGGIVLDARY 60

Query: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFF-FVHDLLMMGLVLSG 120
           SYS  FKF A  N V   F LLS+ F+ +  RQ   GS   ++FF F+HDL MM LV+ G
Sbjct: 61  SYSPEFKFLAFTNIVVGCFSLLSLLFLVLVVRQ---GSNPNHYFFLFLHDLAMMSLVVGG 120

Query: 121 CAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTK 180
           CAAAT +GF+G++GN+HTGW  ICD FGKFCNR   S+ ISY  ++CL ILTI SA+ ++
Sbjct: 121 CAAATTVGFLGKHGNSHTGWMQICDNFGKFCNRAQTSVTISYLNLICLSILTITSASKSR 177

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy Swiss-Prot
Match: B9I3X5 (CASP-like protein 1F2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_823430 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-37
Identity = 83/165 (50.30%), Postives = 113/165 (68.48%), Query Frame = 0


Query: 19  LYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSSAFKFFAIANAVACG 78
           +++ +QI LR  VI+++ A+TW ++T KQ++ I GF LDA YSYS  FKF + AN V   
Sbjct: 19  IFIGAQIFLRIVVIAASFASTWLMLTNKQTIDIGGFVLDANYSYSPEFKFLSYANIVVGA 78

Query: 79  FCLLSVCFVFISTRQLALGSRQRN----FFFFVHDLLMMGLVLSGCAAATAIGFVGRYGN 138
           F  +S+ F+ +      +G R  N    F  F+HDL +M LVL GCAAAT IG +G+YGN
Sbjct: 79  FSFVSLLFLVL------VGRRSSNPTYYFILFLHDLALMSLVLGGCAAATVIGSLGKYGN 138

Query: 139 THTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTK 180
           +HTGW  ICD FGKFC R T S+A SYF+++CLLILTI SA+ ++
Sbjct: 139 SHTGWMQICDHFGKFCKRATTSVAFSYFSLVCLLILTITSASKSR 177

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy Swiss-Prot
Match: B9RH17 (CASP-like protein 1F2 OS=Ricinus communis OX=3988 GN=RCOM_1446020 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 68/159 (42.77%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 18  KLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSSAFKFFAIANAVAC 77
           +++  +Q+I R   I+  +A+   ++T+ Q+V++FG    ARYSYSSAF+F   ANAV C
Sbjct: 29  RIFFMAQVIFRILAIAFAVASISAMVTSDQNVIVFGMDTAARYSYSSAFRFLVGANAVVC 88

Query: 78  GFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAATAIGFVGRYGNTHT 137
           GF +LS+ FV + +R+ +    ++N++ F+HD++MM +++SGC+AATAIG+VGRYG    
Sbjct: 89  GFSVLSLIFVCLMSRR-SEAILEKNYYLFLHDMVMMVMMVSGCSAATAIGYVGRYGEKEI 148

Query: 138 GWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISAN 177
            W+ +CD  GKFCN+  +SI ++Y A+ C + LT ++A+
Sbjct: 149 TWTAVCDFVGKFCNQALVSIVLAYLALFCYVALTTLAAH 186

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy TrEMBL
Match: A0A6J1JE80 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111484991 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.4e-93
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60
           MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY
Sbjct: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60

Query: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120
           SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC
Sbjct: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120

Query: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL 180
           AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL
Sbjct: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL 180

Query: 181 QR 183
           QR
Sbjct: 181 QR 182

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy TrEMBL
Match: A0A6J1E119 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429832 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 172/182 (94.51%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60
           M DNNVELEAKSQG HA LYLSSQIILRA VISSTLAA WTL+TAKQSVVIFGFTLDARY
Sbjct: 1   MADNNVELEAKSQGPHANLYLSSQIILRALVISSTLAAIWTLVTAKQSVVIFGFTLDARY 60

Query: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120
           SYSSAFKFFAIANA+ACGFCLLSVCFVFISTRQLALG+RQRNFFFFVHDLLMMGLVLSGC
Sbjct: 61  SYSSAFKFFAIANAIACGFCLLSVCFVFISTRQLALGNRQRNFFFFVHDLLMMGLVLSGC 120

Query: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL 180
           AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRI ISIAISYFAVLCLLILTIISANPTKL
Sbjct: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRIAISIAISYFAVLCLLILTIISANPTKL 180

Query: 181 QR 183
            R
Sbjct: 181 HR 182

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy TrEMBL
Match: A0A6J1C084 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006880 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.5e-54
Identity = 112/171 (65.50%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 5   NVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSS 64
           ++ELE+        L+L SQ ILR  VI+STLAA W ++TAKQSV++FG  LDARYSYS 
Sbjct: 3   DIELESNKSNTSHNLHLCSQTILRGLVIASTLAAAWLMLTAKQSVIVFGIPLDARYSYSP 62

Query: 65  AFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAAT 124
           AFKFFA+ANA+ACGFC LSV  +F+ + +L     Q N+  F+HDLLMM LV SGCAA+T
Sbjct: 63  AFKFFALANAIACGFCFLSVLLLFVLSHRL---HNQPNYILFLHDLLMMVLVASGCAAST 122

Query: 125 AIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISA 176
           AIG+VG+YGN+HTGWSPICD FGKFCNR+T S+AISY AV+CLLILTIISA
Sbjct: 123 AIGYVGKYGNSHTGWSPICDHFGKFCNRVTTSVAISYLAVICLLILTIISA 170

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy TrEMBL
Match: A0A5A7UPF9 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00240 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.5e-50
Identity = 117/183 (63.93%), Postives = 141/183 (77.05%), Query Frame = 0


Query: 4   NNVELEAKS-------QGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTL 63
           N++ELE+KS       Q +   L+L SQIILR  VISSTLAATW ++TAKQSV++FG   
Sbjct: 7   NDMELESKSCSHHHDHQPIITNLHLCSQIILRVLVISSTLAATWIILTAKQSVLVFGIPF 66

Query: 64  DARYSYSSAFKFFAIANAVACGFCLLSVCF-VFISTRQLALGSRQRN----FFFFVHDLL 123
           DARY+YSSAF+FFA ANA+A  FC LS+CF +F STR  +  S   N    FFF +HDLL
Sbjct: 67  DARYNYSSAFEFFAFANAIASAFCFLSLCFLIFSSTRPSS--STPPNFYILFFFRLHDLL 126

Query: 124 MMGLVLSGCAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILT 175
           MMGLVLSGC+AATAIG+VG+YGNTH GWSPIC+ F  FCNR+T SIAISY +V+CLLILT
Sbjct: 127 MMGLVLSGCSAATAIGYVGKYGNTHAGWSPICNHFPSFCNRVTASIAISYLSVICLLILT 186

[Close]

BLAST of CmaCh10G000330.1 vs. ExPASy TrEMBL
Match: A0A5D3BHA2 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00240 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.6e-50
Identity = 117/182 (64.29%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 4   NNVELEAKS------QGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLD 63
           N++ELE+KS      Q     L+L SQIILR  VISSTLAATW ++TAKQSV++FG   D
Sbjct: 7   NDMELESKSCSHRHDQPTITNLHLCSQIILRVLVISSTLAATWIILTAKQSVLVFGIPFD 66

Query: 64  ARYSYSSAFKFFAIANAVACGFCLLSVCF-VFISTRQLALGSRQRN----FFFFVHDLLM 123
           ARY+YSSAF+FFA ANA+A  FC LS+CF +F STR  +  S   N    FFF +HDLLM
Sbjct: 67  ARYNYSSAFEFFAFANAIASAFCFLSLCFLIFSSTRPSS--STPPNFYILFFFRLHDLLM 126

Query: 124 MGLVLSGCAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTI 175
           MGLVLSGC+AATAIG+VG+YGNTH GWSPIC+ F  FCNR+T SIAISY +V+CLLILTI
Sbjct: 127 MGLVLSGCSAATAIGYVGKYGNTHAGWSPICNHFPSFCNRVTASIAISYLSVICLLILTI 186

[Close]

BLAST of CmaCh10G000330.1 vs. NCBI nr
Match: XP_022987446.1 (CASP-like protein 1F1 [Cucurbita maxima])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60
           MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY
Sbjct: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60

Query: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120
           SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC
Sbjct: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120

Query: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL 180
           AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL
Sbjct: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL 180

Query: 181 QR 183
           QR
Sbjct: 181 QR 182

[Close]

BLAST of CmaCh10G000330.1 vs. NCBI nr
Match: XP_022921629.1 (CASP-like protein 1F1 [Cucurbita moschata])

HSP 1 Score: 332.0 bits (850), Expect = 3.2e-87
Identity = 172/182 (94.51%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60
           M DNNVELEAKSQG HA LYLSSQIILRA VISSTLAA WTL+TAKQSVVIFGFTLDARY
Sbjct: 1   MADNNVELEAKSQGPHANLYLSSQIILRALVISSTLAAIWTLVTAKQSVVIFGFTLDARY 60

Query: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120
           SYSSAFKFFAIANA+ACGFCLLSVCFVFISTRQLALG+RQRNFFFFVHDLLMMGLVLSGC
Sbjct: 61  SYSSAFKFFAIANAIACGFCLLSVCFVFISTRQLALGNRQRNFFFFVHDLLMMGLVLSGC 120

Query: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTKL 180
           AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRI ISIAISYFAVLCLLILTIISANPTKL
Sbjct: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRIAISIAISYFAVLCLLILTIISANPTKL 180

Query: 181 QR 183
            R
Sbjct: 181 HR 182

[Close]

BLAST of CmaCh10G000330.1 vs. NCBI nr
Match: XP_023516133.1 (CASP-like protein 1F1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 166/184 (90.22%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 3   DNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSY 62
           +NNVELEAKSQG HA LYLSSQIILRA VISSTLAATWTL TAKQSVVIFGFTLDARYSY
Sbjct: 4   NNNVELEAKSQGPHANLYLSSQIILRALVISSTLAATWTLTTAKQSVVIFGFTLDARYSY 63

Query: 63  SSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRN----FFFFVHDLLMMGLVLS 122
           SSAFKFFA+ANA+ACGFCLLS+CFVFIS+RQLALG+RQRN    FFFFVHDLLMMGLV+S
Sbjct: 64  SSAFKFFALANAIACGFCLLSLCFVFISSRQLALGNRQRNFSFFFFFFVHDLLMMGLVVS 123

Query: 123 GCAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPT 182
           GCAAATAIGFVGRYGNTHTGWSPICDQF KFCNRITISIAISYFAVLCLLILTIISA PT
Sbjct: 124 GCAAATAIGFVGRYGNTHTGWSPICDQFAKFCNRITISIAISYFAVLCLLILTIISAYPT 183

[Close]

BLAST of CmaCh10G000330.1 vs. NCBI nr
Match: KAG6589353.1 (CASP-like protein 1F1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.1 bits (588), Expect = 7.6e-57
Identity = 128/157 (81.53%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARY 60
           M DNNVELEAKSQG HA LYLSSQIILRA VISSTLAA WTL+TAKQSVVIFGFTLDARY
Sbjct: 1   MADNNVELEAKSQGPHANLYLSSQIILRALVISSTLAAIWTLVTAKQSVVIFGFTLDARY 60

Query: 61  SYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGC 120
           SYSSAFKFFAIANA+ACGFCLLSVCFVFISTRQLALGSRQRNFFFF HDLLMMGLVLSGC
Sbjct: 61  SYSSAFKFFAIANAIACGFCLLSVCFVFISTRQLALGSRQRNFFFFFHDLLMMGLVLSGC 120

Query: 121 AAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISI 158
           AAATAIGFVG   +  T  SP        C+   IS+
Sbjct: 121 AAATAIGFVGSEPHIATP-SPFAPHRHPHCHAHLISL 156

[Close]

BLAST of CmaCh10G000330.1 vs. NCBI nr
Match: XP_022134667.1 (CASP-like protein 1F2 [Momordica charantia] >XP_022134668.1 CASP-like protein 1F2 [Momordica charantia])

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-53
Identity = 112/171 (65.50%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 5   NVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSS 64
           ++ELE+        L+L SQ ILR  VI+STLAA W ++TAKQSV++FG  LDARYSYS 
Sbjct: 3   DIELESNKSNTSHNLHLCSQTILRGLVIASTLAAAWLMLTAKQSVIVFGIPLDARYSYSP 62

Query: 65  AFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAAT 124
           AFKFFA+ANA+ACGFC LSV  +F+ + +L     Q N+  F+HDLLMM LV SGCAA+T
Sbjct: 63  AFKFFALANAIACGFCFLSVLLLFVLSHRL---HNQPNYILFLHDLLMMVLVASGCAAST 122

Query: 125 AIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISA 176
           AIG+VG+YGN+HTGWSPICD FGKFCNR+T S+AISY AV+CLLILTIISA
Sbjct: 123 AIGYVGKYGNSHTGWSPICDHFGKFCNRVTTSVAISYLAVICLLILTIISA 170

[Close]

BLAST of CmaCh10G000330.1 vs. TAIR 10
Match: AT4G25040.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-21
Identity = 55/161 (34.16%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 19  LYLSSQIILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSSAFKFFAIANAVACG 78
           L L  Q+ +R   I + +A+ W +IT ++   ++G   +A+YSYSSAF++   A    C 
Sbjct: 13  LNLGVQVSMRVLTIGAAMASMWVMITNREVASVYGIAFEAKYSYSSAFRYLVYAQIAVCA 72

Query: 79  FCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAATAIGFVGRYGNTHTG 138
             L ++ +  ++ R+  L      F  F  DLL     +S  +AA A G+VG+YGN   G
Sbjct: 73  ATLFTLVWACLAVRRRGL-----VFALFFFDLLTTLTAISAFSAAFAEGYVGKYGNKQAG 132

Query: 139 WSPICDQFGKFCNRITISIAISYFAVLCLLILTIISANPTK 180
           W PIC     +C+R+TIS+A+S+ + + L ILT+++A+  +
Sbjct: 133 WLPICGYVHGYCSRVTISLAMSFASFILLFILTVLTASAAR 168

[Close]

BLAST of CmaCh10G000330.1 vs. TAIR 10
Match: AT4G15630.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-17
Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 24  QIILRASVISSTLAATWTLITAKQSVVI----------FGFTLDARYSYSSAFKFFAIAN 83
           ++ +R   +  T+ A   L  AKQ+ V+             +  A+ SY SAF +   AN
Sbjct: 28  ELTMRVLALVLTMVAATVLGVAKQTKVVPIKLIPTLPPLNVSTTAKASYLSAFVYNISAN 87

Query: 84  AVACGFCLLSVCFVFISTRQLALGSRQRNFFF--FVHDLLMMGLVLSGCAAATAIGFVGR 143
           A+ACG+  +S+  V IS      G R ++      + DL+M+ L+ S   AA AIG +GR
Sbjct: 88  AIACGYTAISIVIVMISK-----GKRSKSLLMAVLIGDLMMVALLFSSTGAAGAIGLMGR 147

Query: 144 YGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTIISA 176
           +GN H  W  +C  FGKFCN+  +S+AI+  A +  ++L ++ A
Sbjct: 148 HGNKHVMWKKVCGVFGKFCNQAAVSVAITLIASVVFMLLVVLDA 186

[Close]

BLAST of CmaCh10G000330.1 vs. TAIR 10
Match: AT4G15620.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-16
Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = 0


Query: 4   NNVELEAKSQGLHAKLYLSSQIILRASVISSTLAATWTLITAKQSVVI----------FG 63
           N +E+E   + L ++     ++ +R   +  T+AA   L  AKQ+ V+            
Sbjct: 10  NGMEMEKGKRELGSR--KGVELTMRVLALILTMAAATVLGVAKQTKVVSIKLIPTLPPLD 69

Query: 64  FTLDARYSYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFV--HDLL 123
            T  A+ SY SAF +    NA+ACG+  +S+  + IS      G R +     V   DL+
Sbjct: 70  ITTTAKASYLSAFVYNISVNAIACGYTAISIAILMISR-----GRRSKKLLMVVLLGDLV 129

Query: 124 MMGLVLSGCAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILT 176
           M+ L+ SG  AA+AIG +G +GN H  W  +C  FGKFC+R   S+ ++  A +  + L 
Sbjct: 130 MVALLFSGTGAASAIGLMGLHGNKHVMWKKVCGVFGKFCHRAAPSLPLTLLAAVVFMFLV 186

[Close]

BLAST of CmaCh10G000330.1 vs. TAIR 10
Match: AT5G15290.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-14
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 0


Query: 1   MPDNNVELEAKSQGLHAKLYLSSQI-----ILRASVISSTLAATWTLITAKQSVVIFG-- 60
           M     E+   S+G+     +S +I     ILR     +T+ +   + T  +++  F   
Sbjct: 1   MKSGQAEIMETSKGIQKSGLMSRRIAILEFILRIVAFFNTIGSAILMGTTHETLPFFTQF 60

Query: 61  FTLDARYSYSSAFKFFAIANAVACGFCLLSVCFVFISTRQLALGSRQRNFFFFVHDLLMM 120
               A Y+   A  FF +ANAV  G+ +LS+   F+    +   ++       + D+ M+
Sbjct: 61  IRFQAEYNDLPALTFFVVANAVVSGYLILSLTLAFVHI--VKRKTQNTRILLIILDVAML 120

Query: 121 GLVLSGCAAATAIGFVGRYGNTHTGWSPICDQFGKFCNRITISIAISYFAVLCLLILTII 176
           GL+ SG ++A AI ++   GN  T W  IC QF  FC RI+ S+  S+ A++ L++L ++
Sbjct: 121 GLLTSGASSAAAIVYLAHNGNNKTNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILL 180

[Close]

BLAST of CmaCh10G000330.1 vs. TAIR 10
Match: AT4G03540.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 74.7 bits (182), Expect = 8.5e-14
Identity = 50/150 (33.33%), Postives = 83/150 (55.33%), Query Frame = 0


Query: 25  IILRASVISSTLAATWTLITAKQSVVIFGFTLDARYSYSSAFKFFAIANAVACGFCLLSV 84
           ++LR +   + LAA   +IT+++       +L+A+Y+  +AFK+F IANAV   +  L  
Sbjct: 11  LVLRLAAFGAALAALIVMITSRERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFL-- 70

Query: 85  CFVFISTRQLALGSRQRNFFFFVHDLLMMGLVLSGCAAATAIGFVGRYGNTHTGWSPICD 144
             +F+    L         F  V DL+M  L+ S  +AA A+  VG+ GN + GW PIC 
Sbjct: 71  -VLFLPKESLLWK------FVVVLDLVMTMLLTSSLSAALAVAQVGKKGNANAGWLPICG 130

Query: 145 QFGKFCNRITISIAISYFAVLCLLILTIIS 175
           Q  KFC++IT ++   + A++  ++L + S
Sbjct: 131 QVPKFCDQITGALIAGFVALVLYVLLLLYS 151

The following BLAST results are available for this feature:

BLAST of CmaCh10G000330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9RA90	8.5e-43	52.51	CASP-like protein 1F1 OS=Ricinus communis OX=3988 GN=RCOM_1504680 PE=2 SV=1	[more]
A7PHN8	3.6e-41	52.81	CASP-like protein 1F1 OS=Vitis vinifera OX=29760 GN=VIT_17s0000g00560 PE=2 SV=2	[more]
B9IFI5	2.6e-39	48.33	CASP-like protein 1F1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_824792 PE=2 S...	[more]
B9I3X5	2.4e-37	50.30	CASP-like protein 1F2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_823430 PE=3 S...	[more]
B9RH17	1.8e-32	42.77	CASP-like protein 1F2 OS=Ricinus communis OX=3988 GN=RCOM_1446020 PE=2 SV=1	[more]

BLAST of CmaCh10G000330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JE80	5.4e-93	100.00	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111484991 PE=3 SV=1	[more]
A0A6J1E119	1.5e-87	94.51	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429832 PE=3 SV=1	[more]
A0A6J1C084	6.5e-54	65.50	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006880 PE=3 SV=1	[more]
A0A5A7UPF9	1.5e-50	63.93	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]
A0A5D3BHA2	2.6e-50	64.29	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00...	[more]

BLAST of CmaCh10G000330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987446.1	1.1e-92	100.00	CASP-like protein 1F1 [Cucurbita maxima]	[more]
XP_022921629.1	3.2e-87	94.51	CASP-like protein 1F1 [Cucurbita moschata]	[more]
XP_023516133.1	4.0e-82	90.22	CASP-like protein 1F1 [Cucurbita pepo subsp. pepo]	[more]
KAG6589353.1	7.6e-57	81.53	CASP-like protein 1F1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022134667.1	1.3e-53	65.50	CASP-like protein 1F2 [Momordica charantia] >XP_022134668.1 CASP-like protein 1F...	[more]

BLAST of CmaCh10G000330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25040.1	2.5e-21	34.16	Uncharacterised protein family (UPF0497)	[more]
AT4G15630.1	2.2e-17	33.54	Uncharacterised protein family (UPF0497)	[more]
AT4G15620.1	5.3e-16	31.52	Uncharacterised protein family (UPF0497)	[more]
AT5G15290.1	5.0e-14	29.12	Uncharacterised protein family (UPF0497)	[more]
AT4G03540.1	8.5e-14	33.33	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 23..166 e-value: 2.8E-37 score: 127.8
IPR006459	Casparian strip membrane protein	TIGRFAM	TIGR01569	TIGR01569	coord: 25..175 e-value: 1.5E-42 score: 143.0
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 14..177
None	No IPR available	PANTHER	PTHR11615:SF264	CASP-LIKE PROTEIN 1F1	coord: 14..177

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G000330	CmaCh10G000330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000330.1:exon:826	CmaCh10G000330.1:exon:826	exon
CmaCh10G000330.1:exon:825	CmaCh10G000330.1:exon:825	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000330.1:three_prime_utr	CmaCh10G000330.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000330.1:cds	CmaCh10G000330.1:cds_2	CDS
CmaCh10G000330.1:cds	CmaCh10G000330.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000330.1:five_prime_utr	CmaCh10G000330.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000330.1	CmaCh10G000330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding