CmaCh09G008420.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G008420.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Aminotran_1_2 domain-containing protein
Location	Cma_Chr09: 4131577 .. 4133374 (-)
Sequence length	228
RNA-Seq Expression	CmaCh09G008420.1
Synteny	CmaCh09G008420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGCGGAAAGCGCGTGACGACAAGGTGAAGTCACCCGCGCCGCCCTCGGGTTTACAGCGGCAGAGAGAGTTGAGAGAGAGTGGTCAGTTTTTATTCAGGCGAAAAAGCATTGGGCCTTTCTCCTGAATTCCGCAGCCCAAGGCCCAATCCACTTCCTTCTTCCATCCTTTTCCTCACCAATTTCTCCTCGATTCCGCTGCTTTATGAGTAATCTCTGTACATCTCGAAATTCAAATATTTTAAATGTCAAATTATTATACAACTTTATCTTTGATGTAGAACAATACTCCAAATCTACTAAAACTTGTTTTTAAGACCTTAAAGTTACGACTATAGCCAAATACATCTCGTAGACGATACAAAACTTAAATAGCGCTAGATGTTAAATAATATTCAAAAAGTATTACATTAAATTATTTATGTGGACATGGAGTTTTGAAATTGTATTTTATTTGTATTATTACATATTTTATAAACTAAAAGTTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAATTTTTGTTAAATCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTTGTTAAATCATGAACTCTGCTTAGTCACCGTCAGATGACGTGACTGAGCTAGTGGGCCCCAGCAGCGTGTTGTACGAAGAGCTAGGATTCGGTGTGACAGTTGTTAGGTGTACCCGATATATTGTACACCAATTACCAGCGTCCATCAGGATTCAATTATTACATGCCTATTTCCGTGCATTTCGTTTTAGCTTCAGAATTGAACGCCTGGGCTTTTGCCACGTGGCAGATGCACGCACAAACCTAAAATTTAAATGTTATATATTATTGCAGGGATGAAAATTATTTAAAATTAATGGGATAATCAAATAAAAATATTATTTATTTGTATGAATTTATTTATTTATTTATTTATTATTATTATTATTTTTTTATCTTAAACATAATAACTGCTAGATAAAACTTAAGTTTATATCAAAAGTATTTATTATTGTTTTATTTGCGCATTTTAATTCATGTTTTGCAAATATTGTATTTTATAATTTTATTAAAAGTTTATTTAAAAAAATGATATAACTTAGGTGTAACTTTATTTTCTAAATTATTTTTCACTTTCAATCAATTAAATTACCATTAAATATGATTAAATCTGTAATTTAGCCATTAAAAAAATTAAATTTAAAAGTTTTTTTTCCTTCGAGTTACAATGAGAAGGGTAATCAATTGCACCATGATTAAAGCTTTTTTTCCCCTTAAAGTTTGTATATATTTAAATAATATGTAATGAATTCACTTGTGTTATTACCAAAATACCCTTATCCCCCGCCAACTCTCTATTATTTTTACCGTTAGCGTTAGAGTCCAGTTAGTACTCTAATTCTCAAAATGAGAATATTAATCCAAATAAAATGGGAATGGGGAGGGGGATGAGTACACGGGCAGAAAGCTGATTTCTCTCGGCATGCCCGATCCTTCTGCTTATTCTTGTTTTCGCGCGCCGCTCAACAGGCGCTTGTTCATCATCTTCAGTCTGAGAAGGTTGGATTCCGATTCCGATTTCGATTTCTCCCCTGTTTTTCTTTTCCGTTTTGGTGCATAAATTTCTGGGAACTGTTTCTCGTTTCTTTTCTTTTTCCCAAGAGAAAAAGTATCTGTATAAATGTTTTTGGTTGATTACCTTTCAGATTGCAGAAACTTCTGAAAAGCTTGGAATTCTTGTAGTTGCTGACGAGGTTTATGGGCGTCTTGCTTTTGGAAGTAAACCCTTTGTGCCGATGGGAGTCTAA

mRNA sequence

ATGGGATTGCGGAAAGCGCGTGACGACAAGAAAGCTGATTTCTCTCGGCATGCCCGATCCTTCTGCTTATTCTTGTTTTCGCGCGCCGCTCAACAGGCGCTTGTTCATCATCTTCAGTCTGAGAAGATTGCAGAAACTTCTGAAAAGCTTGGAATTCTTGTAGTTGCTGACGAGGTTTATGGGCGTCTTGCTTTTGGAAGTAAACCCTTTGTGCCGATGGGAGTCTAA

Coding sequence (CDS)

ATGGGATTGCGGAAAGCGCGTGACGACAAGAAAGCTGATTTCTCTCGGCATGCCCGATCCTTCTGCTTATTCTTGTTTTCGCGCGCCGCTCAACAGGCGCTTGTTCATCATCTTCAGTCTGAGAAGATTGCAGAAACTTCTGAAAAGCTTGGAATTCTTGTAGTTGCTGACGAGGTTTATGGGCGTCTTGCTTTTGGAAGTAAACCCTTTGTGCCGATGGGAGTCTAA

Protein sequence

MGLRKARDDKKADFSRHARSFCLFLFSRAAQQALVHHLQSEKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV

Homology

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy Swiss-Prot
Match: Q9FN30 (Probable aminotransferase TAT2 OS=Arabidopsis thaliana OX=3702 GN=At5g53970 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-09
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 42  KIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           KIAE+++KLG LV+ADEVYG LAFGSKPFVPMGV
Sbjct: 195 KIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGV 228

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy Swiss-Prot
Match: Q9ST02 (Nicotianamine aminotransferase A OS=Hordeum vulgare OX=4513 GN=naat-A PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 42  KIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           K+AE + KLGILV+ADEVYG+L  GS PF+PMGV
Sbjct: 241 KVAEVARKLGILVIADEVYGKLVLGSAPFIPMGV 274

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy Swiss-Prot
Match: A0A0P0VI36 (Nicotianamine aminotransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NAAT1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-07
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 42  KIAETSEKLGILVVADEVYGRLAFGSKPFVPMG 75
           K+AE + KLGILV+ DEVYG L FGS PFVPMG
Sbjct: 274 KVAEVARKLGILVITDEVYGNLVFGSSPFVPMG 306

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy Swiss-Prot
Match: Q9ST03 (Nicotianamine aminotransferase B OS=Hordeum vulgare OX=4513 GN=naat-B PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-07
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 42  KIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           K+AE +++LGILV+ADEVYG+L  GS PF+PMGV
Sbjct: 331 KVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGV 364

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy Swiss-Prot
Match: Q67Y55 (Probable aminotransferase TAT1 OS=Arabidopsis thaliana OX=3702 GN=At4g28420 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMG 75
           +K+AET++KLGI+V+ DEVY +  FG KPFVPMG
Sbjct: 221 KKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMG 254

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy TrEMBL
Match: A0A6J1CDM8 (probable aminotransferase TAT2 OS=Momordica charantia OX=3673 GN=LOC111010585 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           +KIAET+EKLGILV+ADEVYG LAFGSKPFVPMGV
Sbjct: 197 KKIAETAEKLGILVIADEVYGHLAFGSKPFVPMGV 231

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy TrEMBL
Match: R0GA36 (Aminotran_1_2 domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v10026497mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 36  HHLQSEKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           HHL   KIAET++KLG LV+ADEVYG LAFGSKPFVPMGV
Sbjct: 189 HHLM--KIAETAKKLGFLVIADEVYGHLAFGSKPFVPMGV 226

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy TrEMBL
Match: A0A7G2FME3 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS22111 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 36  HHLQSEKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           HHL   KIAET++KLG LV+ADEVYG LAFGSKPFVPMGV
Sbjct: 171 HHLM--KIAETAKKLGFLVIADEVYGHLAFGSKPFVPMGV 208

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy TrEMBL
Match: D7F4K3 (Aromatic amino acid transaminase OS=Cucumis melo OX=3656 GN=ArAT1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           +KIAET+EKLGILV+ADEVYG LAFGS+PFVPMGV
Sbjct: 196 KKIAETAEKLGILVIADEVYGHLAFGSRPFVPMGV 230

[Close]

BLAST of CmaCh09G008420.1 vs. ExPASy TrEMBL
Match: A0A5D3DWQ3 (Aminotran_1_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001560 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           +KIAET+EKLGILV+ADEVYG LAFGS+PFVPMGV
Sbjct: 196 KKIAETAEKLGILVIADEVYGHLAFGSRPFVPMGV 230

[Close]

BLAST of CmaCh09G008420.1 vs. NCBI nr
Match: XP_010520924.1 (PREDICTED: probable aminotransferase TAT2 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           EKIAET++KLGILV+ADEVYG LAFGSKPFVPMGV
Sbjct: 195 EKIAETAKKLGILVIADEVYGHLAFGSKPFVPMGV 229

[Close]

BLAST of CmaCh09G008420.1 vs. NCBI nr
Match: XP_010520925.1 (PREDICTED: probable aminotransferase TAT2 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           EKIAET++KLGILV+ADEVYG LAFGSKPFVPMGV
Sbjct: 195 EKIAETAKKLGILVIADEVYGHLAFGSKPFVPMGV 229

[Close]

BLAST of CmaCh09G008420.1 vs. NCBI nr
Match: XP_022139746.1 (probable aminotransferase TAT2 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           +KIAET+EKLGILV+ADEVYG LAFGSKPFVPMGV
Sbjct: 197 KKIAETAEKLGILVIADEVYGHLAFGSKPFVPMGV 231

[Close]

BLAST of CmaCh09G008420.1 vs. NCBI nr
Match: KAG6591936.1 (putative aminotransferase TAT2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 38/75 (50.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1  MGLRKARDDKKADFSRHARSFCLFLFSRAAQQALVHHLQSEKIAETSEKLGILVVADEVY 60
          MGLRKARDDK              + S A    L       ++    +KLGILV+ADEVY
Sbjct: 1  MGLRKARDDK--------------VKSPAPPSGLQRQRVERELQRLQKKLGILVIADEVY 60

Query: 61 GRLAFGSKPFVPMGV 76
          GRL FGSKPFVPMGV
Sbjct: 61 GRLGFGSKPFVPMGV 61

[Close]

BLAST of CmaCh09G008420.1 vs. NCBI nr
Match: XP_006280556.1 (probable aminotransferase TAT2 [Capsella rubella] >EOA13454.1 hypothetical protein CARUB_v10026497mg [Capsella rubella])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 36  HHLQSEKIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           HHL   KIAET++KLG LV+ADEVYG LAFGSKPFVPMGV
Sbjct: 189 HHLM--KIAETAKKLGFLVIADEVYGHLAFGSKPFVPMGV 226

[Close]

BLAST of CmaCh09G008420.1 vs. TAIR 10
Match: AT5G53970.1 (Tyrosine transaminase family protein )

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-10
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 42  KIAETSEKLGILVVADEVYGRLAFGSKPFVPMGV 76
           KIAE+++KLG LV+ADEVYG LAFGSKPFVPMGV
Sbjct: 195 KIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGV 228

[Close]

BLAST of CmaCh09G008420.1 vs. TAIR 10
Match: AT4G28420.1 (Tyrosine transaminase family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMG 75
           +K+AET++KLGI+V+ DEVY +  FG KPFVPMG
Sbjct: 221 KKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMG 254

[Close]

BLAST of CmaCh09G008420.1 vs. TAIR 10
Match: AT4G28420.2 (Tyrosine transaminase family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 41  EKIAETSEKLGILVVADEVYGRLAFGSKPFVPMG 75
           +K+AET++KLGI+V+ DEVY +  FG KPFVPMG
Sbjct: 221 KKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMG 254

[Close]

BLAST of CmaCh09G008420.1 vs. TAIR 10
Match: AT5G36160.1 (Tyrosine transaminase family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.1e-07
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 37  HLQSEKIAETSEKLGILVVADEVYGRLAFGSKPFVPM 74
           HLQ  KIAET+ KLGILV+ADEVY   AFG KPFV M
Sbjct: 201 HLQ--KIAETACKLGILVIADEVYDHFAFGDKPFVSM 235

[Close]

BLAST of CmaCh09G008420.1 vs. TAIR 10
Match: AT2G20610.1 (Tyrosine transaminase family protein )

HSP 1 Score: 50.1 bits (118), Expect = 9.2e-07
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 37  HLQSEKIAETSEKLGILVVADEVYGRLAFGSKPFVPMG 75
           H   +K+AET+ KLGI+V++DEVY R  FG  PFV MG
Sbjct: 223 HDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMG 260

The following BLAST results are available for this feature:

BLAST of CmaCh09G008420.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FN30	5.6e-09	82.35	Probable aminotransferase TAT2 OS=Arabidopsis thaliana OX=3702 GN=At5g53970 PE=2...	[more]
Q9ST02	2.4e-07	70.59	Nicotianamine aminotransferase A OS=Hordeum vulgare OX=4513 GN=naat-A PE=1 SV=2	[more]
A0A0P0VI36	4.0e-07	72.73	Nicotianamine aminotransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NAA...	[more]
Q9ST03	4.0e-07	67.65	Nicotianamine aminotransferase B OS=Hordeum vulgare OX=4513 GN=naat-B PE=1 SV=2	[more]
Q67Y55	2.6e-06	64.71	Probable aminotransferase TAT1 OS=Arabidopsis thaliana OX=3702 GN=At4g28420 PE=2...	[more]

BLAST of CmaCh09G008420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDM8	6.5e-08	88.57	probable aminotransferase TAT2 OS=Momordica charantia OX=3673 GN=LOC111010585 PE...	[more]
R0GA36	1.1e-07	80.00	Aminotran_1_2 domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v1...	[more]
A0A7G2FME3	1.1e-07	80.00	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]
D7F4K3	1.4e-07	85.71	Aromatic amino acid transaminase OS=Cucumis melo OX=3656 GN=ArAT1 PE=2 SV=1	[more]
A0A5D3DWQ3	1.4e-07	85.71	Aminotran_1_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CmaCh09G008420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010520924.1	1.3e-07	88.57	PREDICTED: probable aminotransferase TAT2 isoform X1 [Tarenaya hassleriana]	[more]
XP_010520925.1	1.3e-07	88.57	PREDICTED: probable aminotransferase TAT2 isoform X2 [Tarenaya hassleriana]	[more]
XP_022139746.1	1.3e-07	88.57	probable aminotransferase TAT2 [Momordica charantia]	[more]
KAG6591936.1	1.7e-07	50.67	putative aminotransferase TAT2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_006280556.1	2.3e-07	80.00	probable aminotransferase TAT2 [Capsella rubella] >EOA13454.1 hypothetical prote...	[more]

BLAST of CmaCh09G008420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53970.1	4.0e-10	82.35	Tyrosine transaminase family protein	[more]
AT4G28420.1	1.9e-07	64.71	Tyrosine transaminase family protein	[more]
AT4G28420.2	1.9e-07	64.71	Tyrosine transaminase family protein	[more]
AT5G36160.1	4.1e-07	72.97	Tyrosine transaminase family protein	[more]
AT2G20610.1	9.2e-07	57.89	Tyrosine transaminase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 41..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G008420	CmaCh09G008420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G008420.1:exon:1397	CmaCh09G008420.1:exon:1397	exon
CmaCh09G008420.1:exon:1396	CmaCh09G008420.1:exon:1396	exon
CmaCh09G008420.1:exon:1395	CmaCh09G008420.1:exon:1395	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G008420.1:cds	CmaCh09G008420.1:cds_3	CDS
CmaCh09G008420.1:cds	CmaCh09G008420.1:cds_2	CDS
CmaCh09G008420.1:cds	CmaCh09G008420.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G008420.1	CmaCh09G008420.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046656	folic acid biosynthetic process
biological_process	GO:0006572	tyrosine catabolic process
biological_process	GO:0010189	vitamin E biosynthetic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0008696	4-amino-4-deoxychorismate lyase activity
molecular_function	GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity
molecular_function	GO:0030170	pyridoxal phosphate binding