CmaCh09G000190.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G000190.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 118477 .. 119696 (+)
Sequence length372
RNA-Seq ExpressionCmaCh09G000190.1
SyntenyCmaCh09G000190.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCAGCTACCCAATTCCAGGCCTCCCAATGTAATAAAAAAAACCAAACGGGGGCAATAATGAGGATATAATCGAGTGGAAGCTGGGGGCAGTGAAATGTAAATGCGAAGAACAGTAAGAGTAAGGGCGTGACATTGAGAGAGAGTTGCAGTTGCATGCATGGGATCAAATATGTCCATTTGGAGTATTATTATTATGGAGGGCGCCATTGGTTTTGTTGGTGGGTAATTTGGTAGGTACATGGGTAATTGGCTTTCATTTCCATTCATTGAACGCTATGGATTGAGATTGATTACATAAGGTTAATTGACCAAGTTCCGATGTACCGACACTGTCCATGTGCTCTCAACTCTCTCTGTCACCCAACTCGTATTACTAATACTCACTCTCTCTCGCTTGTAATTCCCACCTCACGTGACCAACGCACCCCTATCAAATCCAACCCCAACTCTATCTACAGATTTCATCGTGTCAAGATCAAACATACGAAAACAGCTCTATAAATTTCTTCAAAAAATTTTACTCCTTCATAATCATTGAATTGAAAGAGGGTGGAAAGTGAAACGAATGAATTAATTTACCTTTAGTGATAACAATTTGCAAGGCAATGTTAATAATAATTTGGTAAAATGTAAAAATTAATTGATTTTTTGAACAGCGTGGGGTTAAGGGCATAGTAATTGGGAGCTGCTTTTCCATATCTCTATGGAAAATAGCAAACCCCAAGGCTAGAGCTGGGTGAATGCCGCCTTTCCCTTTGTTCTTCCTCATCTACCTCTCCACTTCACTTTCTTCTTCCTCATCTTCACTATTATGTTCCATTCACTTTTCACTCTCTTCGATTCGTCCTGGATTTAGGTATGCTTCTTCCCTATTTTACTTTACCATGATTTTAGGGTTTTGAAATTGAAATTGAAATTGAAGTAATAGCTGTAGCGATGAGAGATGGTTGCGTAATTAAAGGCAGCCATGTTTTTGGGGGGAGTTTAGAGCTCACAAAGCTATTCTGTTGTTGAACAGTGGAGAAGAGCGTGCAAGGAGATGGGAAAAGATGGGAAGGCGTTTTAATTGAAATCCTTTCCCGAGGTTTGGTAACTCATATTGTATTTGTATGGATCCATCGCCTCCAGGAAATCGCTTCTTCCAGTGTATGGGAGTGGATACCTAATCGATTTGACAAAATTATTCGGTTGTTGTTGCATCCGATGGGTGGGTAG

mRNA sequence

ATGAGCCAGCTACCCAATTCCAGGCCTCCCAATCAAACCCCAAGGCTAGAGCTGGGTGAATGCCGCCTTTCCCTTTGTTCTTCCTCATCTACCTCTCCACTTCACTTTCTTCTTCCTCATCTTCACTATTATGTTCCATTCACTTTTCACTCTCTTCGATTCGTCCTGGATTTAGTGGAGAAGAGCGTGCAAGGAGATGGGAAAAGATGGGAAGGCGTTTTAATTGAAATCCTTTCCCGAGGTTTGGTAACTCATATTGTATTTGTATGGATCCATCGCCTCCAGGAAATCGCTTCTTCCAGTGTATGGGAGTGGATACCTAATCGATTTGACAAAATTATTCGGTTGTTGTTGCATCCGATGGGTGGGTAG

Coding sequence (CDS)

ATGAGCCAGCTACCCAATTCCAGGCCTCCCAATCAAACCCCAAGGCTAGAGCTGGGTGAATGCCGCCTTTCCCTTTGTTCTTCCTCATCTACCTCTCCACTTCACTTTCTTCTTCCTCATCTTCACTATTATGTTCCATTCACTTTTCACTCTCTTCGATTCGTCCTGGATTTAGTGGAGAAGAGCGTGCAAGGAGATGGGAAAAGATGGGAAGGCGTTTTAATTGAAATCCTTTCCCGAGGTTTGGTAACTCATATTGTATTTGTATGGATCCATCGCCTCCAGGAAATCGCTTCTTCCAGTGTATGGGAGTGGATACCTAATCGATTTGACAAAATTATTCGGTTGTTGTTGCATCCGATGGGTGGGTAG

Protein sequence

MSQLPNSRPPNQTPRLELGECRLSLCSSSSTSPLHFLLPHLHYYVPFTFHSLRFVLDLVEKSVQGDGKRWEGVLIEILSRGLVTHIVFVWIHRLQEIASSSVWEWIPNRFDKIIRLLLHPMGG
Homology
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BLAST of CmaCh09G000190.1 vs. NCBI nr
Match: KAG7024079.1 (AT-hook motif nuclear-localized protein 29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-15
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 68  KRWEGVLIEILSRGLVTHIVFVWIHRLQEIASSSVWEWIPNRFDKIIRLLLHPMGG 124
           KRWEGVLIEI+ RGLV+    VWIHRLQEI SSSV EWIPNRFDKIIRLLL PMGG
Sbjct: 22  KRWEGVLIEIVFRGLVSD--SVWIHRLQEIVSSSVSEWIPNRFDKIIRLLLDPMGG 75

The following BLAST results are available for this feature:
BLAST of CmaCh09G000190.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G000190.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G000190.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024079.13.7e-1582.14AT-hook motif nuclear-localized protein 29, partial [Cucurbita argyrosperma subs... [more]
BLAST of CmaCh09G000190.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh09G000190CmaCh09G000190gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G000190.1:exon:1699CmaCh09G000190.1:exon:1699exon
CmaCh09G000190.1:exon:1700CmaCh09G000190.1:exon:1700exon
CmaCh09G000190.1:exon:1701CmaCh09G000190.1:exon:1701exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh09G000190.1:cdsCmaCh09G000190.1:cdsCDS
CmaCh09G000190.1:cdsCmaCh09G000190.1:cds_2CDS
CmaCh09G000190.1:cdsCmaCh09G000190.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh09G000190.1CmaCh09G000190.1-proteinpolypeptide