CmaCh06G016870.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016870.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 10393846 .. 10394741 (+)
Sequence length	375
RNA-Seq Expression	CmaCh06G016870.1
Synteny	CmaCh06G016870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATGCAGTCGATTCATACAGTCCAGGTATGTTCCGTCCTCCCATCAACAGCCTTGGAAGAACAGCATTTTGGGCATGCCGATTGCCCCATGCACAACTAATTTGTTAGGCTCCTTCAAATTCCTCATCAATTTCGATCAAATTGACGATACCGAGAAGAATCGGTAACCGAGAGACCGGTGGGGCGAGTTGAGCAATTTCTGTTGAAGAATCCGATGCGATTTCGGTTGCCTCTGATCCGCGGCGGAATGAAGAAAGATTTTCGATTGCTTTAAACCGCTCCAAAAGCATTCGATTCGAGTTGGTCTTTCCAAAGGTTCTATTGAGGGAGCTTTCTTCGTTTTCAGGGTTGCGCGGAGGAATATCTGGTCGTTGTTGCGATATATGTGGTGTGAAATTACTGCTGTATGTGAAATTCCATCGCCGAGCTTCGTCAATGAGGGTATTGGCCTTTTATCTCGATTTTGGTTTTGTTCCATATGAATGCAATGTGAATATTTTTTGTGTTTTCGTTTGCATTATGATATTTTTAGGTTGTCCTTTTTTTTTTTGTTGTCGTGTTTAGGTGGTTAGATTATGTTTTGCTGCCTCCTTGTTGAGGATGTACCATTTTAATGTAACAATCTGTGTTAAGGGACATGAAAATGTTACAAATTTTCTTCTCAATTCCTTGGTGGTTTTTGGTTTTGTTTCTCCCCCACCAAACCCCAATGATTTTATCATAGCTTTATGCTTTTATATTATGTAATTCGATGTGTATGGCTAGCAGACAATATTTTTGTGTTTTACATAGTGAACCAAAGGTTGAGGGTAATGTTTCTTCTATGGCAGTTTGCTTCTCTATTGATGCTCAATGGCAGTGATATAAACACATTTCCTTTTGAAGTATGA

mRNA sequence

ATGAACGATGCAGTCGATTCATACAGTCCAGAATCCGATGCGATTTCGGTTGCCTCTGATCCGCGGCGGAATGAAGAAAGATTTTCGATTGCTTTAAACCGCTCCAAAAGCATTCGATTCGAGTTGGTCTTTCCAAAGGTTCTATTGAGGGAGCTTTCTTCGTTTTCAGGGTTGCGCGGAGGAATATCTGGTCGTTGTTGCGATATATGTGGTGTGAAATTACTGCTGTATGTGAAATTCCATCGCCGAGCTTCGTCAATGAGGGTGGTTAGATTATGTTTTGCTGCCTCCTTGTTGAGGATGTACCATTTTAATTTTGCTTCTCTATTGATGCTCAATGGCAGTGATATAAACACATTTCCTTTTGAAGTATGA

Coding sequence (CDS)

ATGAACGATGCAGTCGATTCATACAGTCCAGAATCCGATGCGATTTCGGTTGCCTCTGATCCGCGGCGGAATGAAGAAAGATTTTCGATTGCTTTAAACCGCTCCAAAAGCATTCGATTCGAGTTGGTCTTTCCAAAGGTTCTATTGAGGGAGCTTTCTTCGTTTTCAGGGTTGCGCGGAGGAATATCTGGTCGTTGTTGCGATATATGTGGTGTGAAATTACTGCTGTATGTGAAATTCCATCGCCGAGCTTCGTCAATGAGGGTGGTTAGATTATGTTTTGCTGCCTCCTTGTTGAGGATGTACCATTTTAATTTTGCTTCTCTATTGATGCTCAATGGCAGTGATATAAACACATTTCCTTTTGAAGTATGA

Protein sequence

MNDAVDSYSPESDAISVASDPRRNEERFSIALNRSKSIRFELVFPKVLLRELSSFSGLRGGISGRCCDICGVKLLLYVKFHRRASSMRVVRLCFAASLLRMYHFNFASLLMLNGSDINTFPFEV

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh06G016870.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G016870.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G016870	CmaCh06G016870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G016870.1:exon:935	CmaCh06G016870.1:exon:935	exon
CmaCh06G016870.1:exon:936	CmaCh06G016870.1:exon:936	exon
CmaCh06G016870.1:exon:937	CmaCh06G016870.1:exon:937	exon
CmaCh06G016870.1:exon:938	CmaCh06G016870.1:exon:938	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G016870.1:cds	CmaCh06G016870.1:cds	CDS
CmaCh06G016870.1:cds	CmaCh06G016870.1:cds_2	CDS
CmaCh06G016870.1:cds	CmaCh06G016870.1:cds_3	CDS
CmaCh06G016870.1:cds	CmaCh06G016870.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G016870.1	CmaCh06G016870.1-protein	polypeptide