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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. AGAGAGAGAGAGAGAGAGAAAGGGTGGGTTTAGGCTCTTTTTCCTCCAATCTTGGTCTCTATTTGGGGTCATGGAAGAAGCAAACAGGAGGAGGAGAAGGTGAGGTATCTTGAATTGAAGGATATTCTCATTGGTCCACTTGAGAAACCTTTCTTCTTTGTTTGATATTGGTGTCGACGTTCTCTATTGGGCTGTTGCTTGTGTTCTTGTGACGGCGGGGTGTAGTCCAGTAATTGAGTCTGCTGGAACTCCGGGAAGGATTCAAGAAATTCTTCCATTTTTGTTGGCTAATCATAATGTCTTCGCTCTGTTCTTATTGAGTTTGATTTTTGAACTTTGT mRNA sequence AGAGAGAGAGAGAGAGAGAAAGGGTGGGTTTAGGCTCTTTTTCCTCCAATCTTGGTCTCTATTTGGGGTCATGGAAGAAGCAAACAGGAGGAGGAGAAGGATATTCTCATTGGTCCACTTGAGAAACCTTTCTTCTTTGTTTGATATTGGTGTCGACGTTCTCTATTGGGCTGTTGCTTGTGTTCTTGTGACGGCGGGGTGTAGTCCAGTAATTGAGTCTGCTGGAACTCCGGGAAGGATTCAAGAAATTCTTCCATTTTTGTTGGCTAATCATAATGTCTTCGCTCTGTTCTTATTGAGTTTGATTTTTGAACTTTGT Coding sequence (CDS) ATGGAAGAAGCAAACAGGAGGAGGAGAAGGATATTCTCATTGGTCCACTTGAGAAACCTTTCTTCTTTGTTTGATATTGGTGTCGACGTTCTCTATTGGGCTGTTGCTTGTGTTCTTGTGACGGCGGGGTGTAGTCCAGTAATTGAGTCTGCTGGAACTCCGGGAAGGATTCAAGAAATTCTTCCATTTTTGTTGGCTAATCATAATGTCTTCGCTCTGTTCTTATTGAGTTTGATTTTTGAACTTTGT Protein sequence MEEANRRRRRIFSLVHLRNLSSLFDIGVDVLYWAVACVLVTAGCSPVIESAGTPGRIQEILPFLLANHNVFALFLLSLIFELC
Homology
BLAST of CmaCh06G012600.1 vs. NCBI nr
Match: KAG7028774.1 (hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24 Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0
Query: 17 LRNLSSLFDIGVDVLYWAVACVLVTAGCSPVIESAGTPGRIQEILPFLLANHNVFALFLL 76
L NLSSLFDIGVDVLYWAVACVLVTAGCS VIESAGTPGRIQEILPFLLANHNV AL LL
Sbjct: 96 LENLSSLFDIGVDVLYWAVACVLVTAGCSSVIESAGTPGRIQEILPFLLANHNVLALCLL 155
Query: 77 SLIFELC 84
SLIFELC
Sbjct: 156 SLIFELC 162
BLAST of CmaCh06G012600.1 vs. NCBI nr
Match: KAG6597307.1 (hypothetical protein SDJN03_10487, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24 Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0
Query: 17 LRNLSSLFDIGVDVLYWAVACVLVTAGCSPVIESAGTPGRIQEILPFLLANHNVFALFLL 76
L NLSSLFDIGVDVLYWAVACVLVTAGCS VIESAGTPGRIQEILPFLLANHNV AL LL
Sbjct: 44 LENLSSLFDIGVDVLYWAVACVLVTAGCSSVIESAGTPGRIQEILPFLLANHNVLALCLL 103
Query: 77 SLIFELC 84
SLIFELC
Sbjct: 104 SLIFELC 110
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG7028774.1 | 1.3e-24 | 94.03 | hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6597307.1 | 1.3e-24 | 94.03 | hypothetical protein SDJN03_10487, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G012600.1:exon:1475 | CmaCh06G012600.1:exon:1475 | exon |
| CmaCh06G012600.1:exon:1476 | CmaCh06G012600.1:exon:1476 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G012600.1:cds | CmaCh06G012600.1:cds_2 | CDS |
| CmaCh06G012600.1:cds | CmaCh06G012600.1:cds | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G012600.1:five_prime_utr | CmaCh06G012600.1:five_prime_utr | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G012600.1 | CmaCh06G012600.1-protein | polypeptide |
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