CmaCh06G007890.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G007890.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1
Location	Cma_Chr06: 4116926 .. 4119587 (-)
Sequence length	912
RNA-Seq Expression	CmaCh06G007890.1
Synteny	CmaCh06G007890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGTAGAATTTCCAGATCTCCTCTTTTTTCTTTCATGGCTTCTGCTTGCCAAAGAATTGCGAGCAGACTCTCCCAATCTTCCTTCAGAACAGTTCTCCGTACAAATTCTCCGCCCAAATCTCCATCTTCCAAGTTCTCCCTGCCGTCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTATTTCTCTTTATCCTTTTATATCTCCTTGTTTCTGTACATTATGTCGTTGCACTTGGTCCGCTTTTGTTGCTTGTTTTCATTTTGATTTTTCTGATTGGTTCTACTTCTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGACCCTCTCCTGGCATCTAACATGAAATATTCTACTTTCTTTTGAATTGTGAGTAGCTTTTTTATGTATTACCTGTCGACTTTTCCTTTTCTTGCTCTGCAATTGTATGCCAGTATTTTTGTGATGGCATCTTCTGATTTTTTTTTTTGTAGTTTTTATTGGTAAACTGCTCCGCAAATCGTGCAGATTGTATGTGAAGTATCAACCATGTTCCATGATCTTACAATTTGATTTGATTTGATTTTTTTTTTTTTTTTTTTTTTTGACGTCCTTTCTGGCATAAATTGGTACAATTATAGTTTAGAAGTTTAGAGTACTGGATTGCTACTGATGCTTTAGGAAGTTTTTGGTCAACTTGTATAAAAATGGAAGTCGAACTGAAGCTAGATCGTTTAAGTTGACTATCCCAGGAAGAGAAACCATCCTAGTTTTGGTTCTCCCTTTTTTGGTTTCTTTCTTTATTGGTTTCAACTTTTGTACCCCAGTTCAACTGGTCTTTATCTTGAGTAAAATTAACTACTAGAACGATAAGGAGAGAATGAATGGAATGACTTTGGTTCTTGACTGGGGACCTTGAAACTGACTGGAGTATTTGGTTCCTGCAGGCACATAATATCAATTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTGTGGAGCTTTCCTATTTTGGTGCAGTGTATCGATATCAAGTATGAAACTAATTATCTCATAGTAGTCCTAAAATGTCGAAGATATTCAAATTCCTATTATTATAACTTGCAAGGAACTAACGATCTGTCAGCGGTGGCTCGTTACCACTTTTAATTACCATATAAAAAATGGAACTGTTACATACTCTCTATTCAGCAGTAGTCATTTCCTGAATCTTTAAATCTTAAGAGTCTCCTATGGAAAACTTTTGACTTGAAAAGTTGGTTACCAAATTTAAGAGAACGGAATGACAGATTGGGTTTCCCCATAAATCAGCTTTGTGTCTGCAATCTAGTTCTCATCATCCTGAAGAAAACTATCTCGACAAGAATCTATTCAGTTCTCATGGAGTTCATGATGTTAGAATAAGGGGATGATCCAGTCTATAGTTTTAGTTAATTCCGTTATATGAACTAACCTTTGTTTGTTTTATGAACGGCATCATTTTTGCTTACAATAATTGTGTGTAGCGAGCATAAAAGATCGTACCTTCGAAGTTATGGCTCACAAATACTCGTATGATTGTTCTTATCATTCAACCCATTAATTTCTTTTATCAAATAATCTATATGACATAACTTCTCATTGCCCCAGATGCATTTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGCCAGTCACGCTATACTTCACTAATCTAGAAATGTCACTTTTGAGTGATGTGTAAAGGTTCCATAGATGTTAGTTCTTGGTGCCTTTGGTTTGCCTAATGTACATGTAATGGTGCCCATATCATACTCCTTTAGATCTGTGCCAAGGGAACCTTGACTATTCTCGTAACTAATCTTACAGGACGACTATCTAACTCGAGAAAAATCCATATTACTTAAGGATCATGTATCAGTTGGCATTGTTGACAATAATTTATGGATTGTTTTTGTTACTGTAGAACTAGATTGCCGCATCAGTTTTCTTGAATGAGATATGAAATGAGTCATATTGCATTTTGGACTCCATTCTGCTCTAGCTATTACTTACATTCTTACCATGTCTTCCTTATTTTTGTACTTGTATTCTGTGGCTGCAGAGCTAGGTTTATCCGTTCCAAGGTGACTTAATTGGGCAGATCACCGTAGTGACAAAGGGATGTCAGCAATGGCTTAGTGGATTTCTTTTAAGTACTATGACCAATTCTGCTCAATTTGTTTAACTAATTTTGATTATTCCATATTCGGAATATGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGACAACTCAGAAAACAATATTTTCCGCCATTGTTGTGGGTCATAAATGTTTGATCAGTGTCATAGATATGTATGTTTCTTATTTATTGAGATACACATCATATTATTTTCCTTTGGCTTCCATGGAACAATATATCTTGTAAACAAATGACGGCTGTTTTTCTTACTACTAGAACAAGCAGCCTACAAAATGAGGAATGACATACTTTGTACCATGAGCTTAAGAGATTATAACACCAAGGGTTGGGAAAATTTTGCATTGAAATCTTGTACAATCATTGGCCAG

mRNA sequence

CCAGTAGAATTTCCAGATCTCCTCTTTTTTCTTTCATGGCTTCTGCTTGCCAAAGAATTGCGAGCAGACTCTCCCAATCTTCCTTCAGAACAGTTCTCCGTACAAATTCTCCGCCCAAATCTCCATCTTCCAAGTTCTCCCTGCCGTCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGCACATAATATCAATTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTGTGGAGCTTTCCTATTTTGGTGCAGTGTATCGATATCAAATGCATTTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGAGCTAGGTTTATCCGTTCCAAGGTGACTTAATTGGGCAGATCACCGTAGTGACAAAGGGATGTCAGCAATGGCTTAGTGGATTTCTTTTAAGTACTATGACCAATTCTGCTCAATTTGTTTAACTAATTTTGATTATTCCATATTCGGAATATGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGACAACTCAGAAAACAATATTTTCCGCCATTGTTGTGGGTCATAAATGTTTGATCAGTGTCATAGATATGTATGTTTCTTATTTATTGAGATACACATCATATTATTTTCCTTTGGCTTCCATGGAACAATATATCTTGTAAACAAATGACGGCTGTTTTTCTTACTACTAGAACAAGCAGCCTACAAAATGAGGAATGACATACTTTGTACCATGAGCTTAAGAGATTATAACACCAAGGGTTGGGAAAATTTTGCATTGAAATCTTGTACAATCATTGGCCAG

Coding sequence (CDS)

ATGGCTTCTGCTTGCCAAAGAATTGCGAGCAGACTCTCCCAATCTTCCTTCAGAACAGTTCTCCGTACAAATTCTCCGCCCAAATCTCCATCTTCCAAGTTCTCCCTGCCGTCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGCACATAA

Protein sequence

MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGT

Homology

[Close]

BLAST of CmaCh06G007890.1 vs. ExPASy Swiss-Prot
Match: Q6NNL9 (Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NOXY2 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNS-PPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGC 60
          MAS C R  S+ + S+FR+ +   S  PKS SS   +P     PS      +R   +LG 
Sbjct: 1  MASRC-RSLSKPAFSAFRSAMNKPSIRPKSASSFIGVP-----PSP---GFSRPIGQLGS 60

Query: 61 VQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          +QSLLP ++AVA AR+ SCL  +S++ R+L+QG
Sbjct: 61 LQSLLPLYSAVASARLTSCLGIDSQNSRSLAQG 84

[Close]

BLAST of CmaCh06G007890.1 vs. ExPASy TrEMBL
Match: A0A6J1L2N2 (uncharacterized protein LOC111498548 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498548 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. ExPASy TrEMBL
Match: A0A6J1KTL9 (uncharacterized protein LOC111498548 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498548 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. ExPASy TrEMBL
Match: A0A6J1FBJ4 (uncharacterized protein LOC111444048 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444048 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQSSFRT+LRTNSP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. ExPASy TrEMBL
Match: A0A6J1FBC3 (uncharacterized protein LOC111444048 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444048 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQSSFRT+LRTNSP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. ExPASy TrEMBL
Match: A0A6J1DMJ3 (uncharacterized protein LOC111021400 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021400 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASAC RIASR+SQSSFR  +RT SP KSPSS F LPSKS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 93

[Close]

BLAST of CmaCh06G007890.1 vs. NCBI nr
Match: XP_023005613.1 (uncharacterized protein LOC111498548 isoform X2 [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 5.3e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. NCBI nr
Match: XP_023005612.1 (uncharacterized protein LOC111498548 isoform X1 [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 5.3e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. NCBI nr
Match: KAG7028395.1 (hypothetical protein SDJN02_09576 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.9 bits (398), Expect = 4.2e-35
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQ+SFRT+LRTNSP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 93

[Close]

BLAST of CmaCh06G007890.1 vs. NCBI nr
Match: XP_023538762.1 (uncharacterized protein LOC111799595 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQSSFRT+LRT SP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 93

[Close]

BLAST of CmaCh06G007890.1 vs. NCBI nr
Match: XP_022937781.1 (uncharacterized protein LOC111444048 isoform X1 [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQSSFRT+LRTNSP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of CmaCh06G007890.1 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-17
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLR--TNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELG 60
          MASAC+++ +R S SS ++ LR  T S   + S+ F LPS+ +      FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61 CVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
          CVQSLLP H+ VA AR+ SCLST SRS RALSQGT
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGT 91

[Close]

BLAST of CmaCh06G007890.1 vs. TAIR 10
Match: AT5G47455.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-17
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 7   RIASRLSQSSFRTVLRT----------NSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSE 66
           R  SR S SSF++ +R+          +SP  + S+ F +PSK +A  + RFS +R PSE
Sbjct: 4   RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67  LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
           LGCVQSLLP H+ VA AR+ SCLST SRS RAL+QGT
Sbjct: 64  LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQGT 100

[Close]

BLAST of CmaCh06G007890.1 vs. TAIR 10
Match: AT5G47455.6 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-17
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 7   RIASRLSQSSFRTVLRT----------NSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSE 66
           R  SR S SSF++ +R+          +SP  + S+ F +PSK +A  + RFS +R PSE
Sbjct: 4   RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67  LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
           LGCVQSLLP H+ VA AR+ SCLST SRS RAL+QGT
Sbjct: 64  LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQGT 100

[Close]

BLAST of CmaCh06G007890.1 vs. TAIR 10
Match: AT5G47455.7 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-17
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 7   RIASRLSQSSFRTVLRT----------NSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSE 66
           R  SR S SSF++ +R+          +SP  + S+ F +PSK +A  + RFS +R PSE
Sbjct: 4   RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67  LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGT 94
           LGCVQSLLP H+ VA AR+ SCLST SRS RAL+QGT
Sbjct: 64  LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQGT 100

[Close]

BLAST of CmaCh06G007890.1 vs. TAIR 10
Match: AT4G17310.2 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 6.1e-16
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MASACQRIASRLSQSSFRTVLR--TNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELG 60
          MASAC+++ +R S SS ++ LR  T S   + S+ F LPS+ +      FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61 CVQSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          CVQSLLP H+ VA AR+ SCLST SRS RALSQ
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQ 89

The following BLAST results are available for this feature:

BLAST of CmaCh06G007890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNL9	1.4e-04	41.94	Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmaCh06G007890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2N2	2.6e-38	100.00	uncharacterized protein LOC111498548 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KTL9	2.6e-38	100.00	uncharacterized protein LOC111498548 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FBJ4	1.3e-34	92.31	uncharacterized protein LOC111444048 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FBC3	1.3e-34	92.31	uncharacterized protein LOC111444048 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DMJ3	2.5e-33	88.17	uncharacterized protein LOC111021400 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CmaCh06G007890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005613.1	5.3e-38	100.00	uncharacterized protein LOC111498548 isoform X2 [Cucurbita maxima]	[more]
XP_023005612.1	5.3e-38	100.00	uncharacterized protein LOC111498548 isoform X1 [Cucurbita maxima]	[more]
KAG7028395.1	4.2e-35	91.40	hypothetical protein SDJN02_09576 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023538762.1	1.6e-34	91.40	uncharacterized protein LOC111799595 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_022937781.1	2.7e-34	92.31	uncharacterized protein LOC111444048 isoform X1 [Cucurbita moschata]	[more]

BLAST of CmaCh06G007890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17310.1	4.2e-17	55.79	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]
AT5G47455.1	4.2e-17	52.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G47455.6	4.2e-17	52.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G47455.7	4.2e-17	52.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G17310.2	6.1e-16	54.84	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..44
None	No IPR available	PANTHER	PTHR33156:SF9	OS02G0658300 PROTEIN	coord: 1..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G007890	CmaCh06G007890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007890.1:exon:537	CmaCh06G007890.1:exon:537	exon
CmaCh06G007890.1:exon:536	CmaCh06G007890.1:exon:536	exon
CmaCh06G007890.1:exon:535	CmaCh06G007890.1:exon:535	exon
CmaCh06G007890.1:exon:534	CmaCh06G007890.1:exon:534	exon
CmaCh06G007890.1:exon:533	CmaCh06G007890.1:exon:533	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007890.1:three_prime_utr	CmaCh06G007890.1:three_prime_utr_3	three_prime_UTR
CmaCh06G007890.1:three_prime_utr	CmaCh06G007890.1:three_prime_utr_2	three_prime_UTR
CmaCh06G007890.1:three_prime_utr	CmaCh06G007890.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007890.1:cds	CmaCh06G007890.1:cds_3	CDS
CmaCh06G007890.1:cds	CmaCh06G007890.1:cds_2	CDS
CmaCh06G007890.1:cds	CmaCh06G007890.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007890.1:five_prime_utr	CmaCh06G007890.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007890.1	CmaCh06G007890.1-protein	polypeptide