CmaCh06G007480.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G007480.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein cornichon homolog 4-like
Location	Cma_Chr06: 3788610 .. 3792929 (-)
Sequence length	908
RNA-Seq Expression	CmaCh06G007480.1
Synteny	CmaCh06G007480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATCTATATGTGTGGCTCGTTTCATTCTTCTTTCTCATAGCTCTTCTGATTGTCCTTATATATCAGGTAAATTTGAAACCCTATCTCGTCTGTTTTTCTCGAATTATCTTCAGTTCAAGTTGGTAAAGTAGAATCTGTTTGAATCAAAGACGGTTTATGTCAAAATTTCGTAGGCGGATACATTGCTTACCATTTCTGATCGTTAATTTGAAGTAAATTAGTATTTCGATTCACGTTTTGTTCAGCTCGGAGGGATTAGTGTTTTGCACAATTATGTTCACATATTCGTCTTCGCTTGTCAATTTGGAAGTACTTTTATAGAAAGCGTAAATCTCGAGTGCACCTTGGATTAGATTTGTATTGAGTGTTCCAGTAGCGGCTGTCAATCCTTGTTTTTTGTTTGTTTACTTGTTGTTATTATTACTTTCTTCGGATTTCACGTCGAATTATTAACTTTTTTCCATGCTCTCTGGTGTTCTTGTATTAATAATTTGAACTTTTTATTGCTTTTCCCCAATTTCTTGAAGTTTTGATCTCATTTGTTATGATGAGGACAATTAAAGTTCAGATTTATGAACATATGGTCATCTCCCCTCTGGCTTATGGATGTGATAGATATGGATACCGTGGATCAATACAGCATGTTGGCTGATTCTTAGTTTGAGTATTCTAATATTGATCGTTAGAATATCTATTGGTAGAAGCTCAATTTGAAAGAAGCTGGTAGTGAGCTTGTATTGAAACAATTCATAGATTTTAAATTTATATTTAGAAGTTATTCAAATCGAGTTTTCCTTTTGTAACTAAACGAATCAATTGCTTCTCTTTGAACATTTGAAGTATGAAAGATAAAAATCAACTTCTTGTTTAGTAATTTATTATCATTATCTTTTGTGTAGCTCATGTGCTTGGCAGATCTCGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATTAATAAAGTGATTTTTCCGGAGTTCATTTCTATGGGAGTTTTGTGCCTCTTCTATCTTTTAACGGGGCATTGGGGTATGTCAATACTTTGTGGGCCCTACATATATTACAATGTGAGAATGTAAGTGTTCTCATCCCTCACCTTTAATTGAACTTATTATCTAAATCAAGTAATATCTGTTACAATTTTTATGCACAAAGTTACAAAGATGCCTAGAGATAAGCGTTTTTGCATGATTTGTAATGTACTATACTGTTTAACCAAAGAAACGCATGAATATGAATATATAGGCTATTTGCTTCTGATTTTGAGCATTCAGAAAAACCATAGCCTCCCATTGATTTGACAGATGTTAAATTTGATGATTGTCCTCAAAGCTAGATCTACCTTGTAGGGTTGGGCTTACTGTCAGGGCATAGCTTAGATCTAAGACGCACAAATACGGCCATGCAACACAGATACAAGACAACATGAACATGGCAATACGTTGATTTCCAAAAAAAAGTAGGACATAACTCGTTGGTAACATGTTAATGTTATTTTTAATTTTTAAAAAATACATTTGTGTATATTTGGACATATTATGAATATCTAATACTTTTAATATAAATTTCTATCTTTAAACATCAAAAGAACATTTATAGACAACGATAAGATAACAATTAACAAACAATGTCAACAATATCCAGTAAGTCTCACACACACACACACACAAAAAAAAGAAAAGACTACAACATCAACATTATGCAATATCCAATAAGTCTTGTAAAAAAAACTACAAGGTAGAATCAAACAAAACAATCCTTCTACAGATTACATATTTTCCCCATCTTTGTCCTCTTCACTGGTAGTTGACAACAACTGACAATGGTTGTTGGTTGTTGTCATTGATGAGCAGCTGTGAGTTTTTTCCCCCACTTCATGGATGCAATCGTGAATTGAAGGTTTGAAGATATTGAAAAGAAACCTTAGTATTTTGAGGTTTATATGTGTGGCTTTAATTGTTGGGTATTGTGCTTTTTTTTAAATGAGCTTAAAAGACTTAAAACTTGAAGATTTGTAACATCACTTGTCTCAGTCATGTCTTTGTGTGTCAGTCATGTCTTTGTGTGTCCCCAGCTGTGTCCAAGTGTGTTCTCATCGTGTCGGAAAATGAAAGGAAAAAAGAATGATAGACACGCAAAACAGTGTGTTGAACACGTGTTGACATGTCTGACACTTGGCCATTTTACAATTGCTGGTGCTTGATAGGCTTAGATCATATTGATACATGGTTGTAAGTAGAGTACATTTGGAGTTTGGAGAATATGCATCGGTGCTAATTGAGTAGAATACATTTTACTGGACCAAGGAATATGACTTACCCTTGATGTGTTTACAAGGTATAGGGTTGGAGCTTGCTTGGCTTCCATCTCTGAAAATGCTTGTGGTAGCGTAGAATGGTGGCAGAACTTCATTGATTGAAAAACTAATATACTATGCCTTTCAATCATTTGCTTTAAAAAACATTAAGCCTATTAATACTGTTTCTACGTATGAGTTCCATGGTTTTGTTATCTACCTTTTATATATTTTTCGAAAGCCAAGTCAAATGGGTCATCAAACAGGGTCTTTGAAAGATTTCTAGAGAGTTTTGGAAGGTAAGAAAGAGAGAGCTCCTATTCCCCTTTTCTTTTTTCATCATATATATAACATGTCCTCATTGTTCTCAAAGTGCCTTTGGTCACTAAAGCCCTTGGTCCACACTTTCTAACAAAAGAATCAGGATCTTGTTGGCCAGGACATGTCCCTCTCTATGGCCATAAACATTTCTGTTTCTTGGAAAATAAGGATAAAGTTTTCTTATGGATTTTAGGTCTATTAGTTTGTATCCTCAAGTATAAAACTATTTCTAAATGTCTTGATAATACCATTTAAAAGTATTTTTTGAACAGTTGTTTTTGTTTTTGAAATATAACTAAGAATGAAAATGTTTACTCAATTTATGTTGTTTGGAATTGGACTATGGCATGACTCTGTCGGATTGAGTGGTTAAGGCACCATTCAAAGGAAGAATCCTTCTTTGGCTCAAAGTTGAAGGAAAAGTAAGCATTATGACAATTATGATATTTTGGTGATTCACCTCCCAGCTATTGCGTTCGCAGTTACCTGTATAGTTGGGTGGTCGTGTTTGCAGCTCCGCAGCATTTTGATAGAAATAAAAGACTTGAAGTTATATTATAAGATAGAAGGATAAAGGAATAGGAATACAATTAACTCTCCGAGTACGTCCAAGTATCTAAGGTACTTGGAACATCCCTCTTGAGCATTTTCAAGCCTAAATCAACTAAACTATTCCCTACCTCCATCCCTTTTCACTTCTTTTAATTGTAACTCAACTCCGTTACTAATTGAGTATAATAAATGTGGGGTGAGGATTTGAATGGTGTGAGGATTTGAACTTTTGATCTCAAAGAACTAAGGAAGCACTAGTACATTCTTACTATCCTAATTATAACCCTGGAAGTTACCCCAAATGGCTTTCCTAAAATTACCGTCCCCCTAAAACACACCTTGATATGATATGCATATCACTATACTCAGCAGTTTTTTGTCGTGATCAGGTATCTACGAAGACAGCACCTGATAGATGTTACAGAGATATTCAATATGCTAAACTGGGAAAAGAAGCAACGGCTTTTCAAACTAGCCTATCTAGTTTTCCTCCTCTTCCTATCTGTATTTTGGTACTTCAAGATGGGAAAGCCTTTTCATGTTATTGTTTTGTTGCCTTTTCTAATGTTAAATGCCTCTGACCGAGTTTGCCTGATTTGTGATTGCAGGATGATATATTATGCTTTGGAAGATGATGAATAAGTAGAAATAATTGCTTGCATGCAGTTGATTGTAACTTAACGGCTTGTGAGTTTAATTTCTACCCTTCAGTATCTCTTTCTGAAGCTCCCGCACCTTGCAGATTTCAATGACATTCTTGTTGGGCTAGGAACTTGGGTTCTATTTTGGAGAGAGGTTTAGCGCTGACTGGCTCTAATTTGCACCTTCCCCACTTCAAATCAGGCTTGTCAATACATTCTGTTAGTTACTTTTCATGGTTGAAATAACTATGATGAATGATGTCTCCCTCCCACACACAAGCTAGCACAGACATTTTAGGCAATGGCAATTCCTATGTGACCATGAACTCGATTTATAATTATGGAGGAATTTGAGTCTAAAGGGAACAAGTGTTTAAGACTCACATTCTTTACTTATTATTTCTTGTGATTTTCTTTGAGATCATTTTTTTTTGGGTTTTTTTCTGTAGACAAGAAAAAGAGATTGATTCTTAATGAATATGTTTCATTTGCAGCTGG

mRNA sequence

ATGGGGGATCTATATGTGTGGCTCGTTTCATTCTTCTTTCTCATAGCTCTTCTGATTGTCCTTATATATCAGCTCATGTGCTTGGCAGATCTCGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATTAATAAAGTGATTTTTCCGGAGTTCATTTCTATGGGAGTTTTGTGCCTCTTCTATCTTTTAACGGGGCATTGGGGTATGTCAATACTTTGTGGGCCCTACATATATTACAATGTGAGAATGTATCTACGAAGACAGCACCTGATAGATGTTACAGAGATATTCAATATGCTAAACTGGGAAAAGAAGCAACGGCTTTTCAAACTAGCCTATCTAGTTTTCCTCCTCTTCCTATCTGTATTTTGGATGATATATTATGCTTTGGAAGATGATGAATAAGTAGAAATAATTGCTTGCATGCAGTTGATTGTAACTTAACGGCTTGTGAGTTTAATTTCTACCCTTCAGTATCTCTTTCTGAAGCTCCCGCACCTTGCAGATTTCAATGACATTCTTGTTGGGCTAGGAACTTGGGTTCTATTTTGGAGAGAGGTTTAGCGCTGACTGGCTCTAATTTGCACCTTCCCCACTTCAAATCAGGCTTGTCAATACATTCTGTTAGTTACTTTTCATGGTTGAAATAACTATGATGAATGATGTCTCCCTCCCACACACAAGCTAGCACAGACATTTTAGGCAATGGCAATTCCTATGTGACCATGAACTCGATTTATAATTATGGAGGAATTTGAGTCTAAAGGGAACAAGTGTTTAAGACTCACATTCTTTACTTATTATTTCTTGTGATTTTCTTTGAGATCATTTTTTTTTGGGTTTTTTTCTGTAGACAAGAAAAAGAGATTGATTCTTAATGAATATGTTTCATTTGCAGCTGG

Coding sequence (CDS)

ATGGGGGATCTATATGTGTGGCTCGTTTCATTCTTCTTTCTCATAGCTCTTCTGATTGTCCTTATATATCAGCTCATGTGCTTGGCAGATCTCGAGTTTGATTATATCAACCCTTATGACTCTGCTTCTCGAATTAATAAAGTGATTTTTCCGGAGTTCATTTCTATGGGAGTTTTGTGCCTCTTCTATCTTTTAACGGGGCATTGGGGTATGTCAATACTTTGTGGGCCCTACATATATTACAATGTGAGAATGTATCTACGAAGACAGCACCTGATAGATGTTACAGAGATATTCAATATGCTAAACTGGGAAAAGAAGCAACGGCTTTTCAAACTAGCCTATCTAGTTTTCCTCCTCTTCCTATCTGTATTTTGGATGATATATTATGCTTTGGAAGATGATGAATAA

Protein sequence

MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFLSVFWMIYYALEDDE

Homology

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BLAST of CmaCh06G007480.1 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.6e-54
Identity = 99/136 (72.79%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGD++ WL+SFFFLIAL+ +++YQL+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           +FYLLTGHW M++LC PY+YYN  +Y +RQHL+DVTEIFN+LNWEKK+RLFKLAY+V  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FL++FWMIY AL+D E
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-47
Identity = 88/136 (64.71%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MG+++ W++SF  LI LL +++YQL+ LADLEFDYINPYDSASRIN V+ PE I  G LC
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           +FYL+TGHW M++LC PY+YYN  +Y R+QHLIDVTEIFN+L+WEKK+RLFKLAY++  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FL++FW+IY  L+D E
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 4.7e-46
Identity = 85/115 (73.91%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 22  IYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYY 81
           I+ L+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC+FYLLTGHW M++LC PY+YY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFLSVFWMIYYALEDDE 137
           N  +Y +RQHL+DVTEIFN+LNWEKK+RLFKLAY+V  LFL++FWMIY AL+D E
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

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BLAST of CmaCh06G007480.1 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-39
Identity = 71/134 (52.99%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDL  W++SF FL  L+I++IYQL CLADLEFD INPYD +SRIN+++ PEF   G+LC
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           L+Y+LTGHW M++L  P+++YN+R+Y++R+HL DVTE++N   WE+K+R++K+ ++   +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSVFWMIYYALED 135
           F++ +W+I+ AL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-27
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 3   DLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLF 62
           DL++W+VSFF  +AL+  + YQ++CL DLE DY+NP+++++RIN+++ PEFI  G LCL 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFL 122
           +LLT HW   ++  P   Y+  +Y  R++LIDVTE+F  +++EKK R  KL + VFL  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SVFWM----IYYALEDDE 137
            VF +    +Y   EDD+
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy TrEMBL
Match: A0A6J1KXU1 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111498534 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.4e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLSVFWMIYYALEDDE
Sbjct: 121 FLSVFWMIYYALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy TrEMBL
Match: A0A6J1FRW5 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111448252 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.0e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSAS+INKVIFPEFISMGVLC
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASQINKVIFPEFISMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLSVFWMIYYALEDDE
Sbjct: 121 FLSVFWMIYYALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy TrEMBL
Match: A0A1S3BLR3 (protein cornichon homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490940 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.0e-64
Identity = 124/136 (91.18%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           M DLYVWLVSFFFLIALLIVL+YQLMCLADLEFDYINPYDSASRINKVI PEF++MGVLC
Sbjct: 1   MEDLYVWLVSFFFLIALLIVLVYQLMCLADLEFDYINPYDSASRINKVIMPEFVAMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMS+LCGPYIYYNVR+YLRRQ+L+DVTEIFNMLNWEKKQRLFKLAYLV LL
Sbjct: 61  LFYLLTGHWGMSMLCGPYIYYNVRLYLRRQYLVDVTEIFNMLNWEKKQRLFKLAYLVVLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLS+FWMIY+ALEDDE
Sbjct: 121 FLSIFWMIYHALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy TrEMBL
Match: A0A0A0L2G6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036490 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.4e-63
Identity = 125/136 (91.91%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           M DLYVWLVSFFFLIALLIVL+YQLMCLADLEFDYINP+DSASRINKVI PEFI MGVLC
Sbjct: 1   MEDLYVWLVSFFFLIALLIVLVYQLMCLADLEFDYINPFDSASRINKVIMPEFIVMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMS+L GPYIYYNVR+YLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLV LL
Sbjct: 61  LFYLLTGHWGMSLLSGPYIYYNVRLYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVVLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLS+FWMIY+ALEDDE
Sbjct: 121 FLSIFWMIYHALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. ExPASy TrEMBL
Match: A0A6J1HL36 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465137 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.5e-63
Identity = 120/136 (88.24%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDL+VWL+SFF L+ALLIVL+YQLMCLADLEFDYINPYDSASRINKV+ PEFI++GVLC
Sbjct: 1   MGDLFVWLISFFSLVALLIVLVYQLMCLADLEFDYINPYDSASRINKVVMPEFIAIGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMS+LCGPYIYYNVR+YLRRQ+L+DVTEIFNMLNWEKK+RLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSMLCGPYIYYNVRLYLRRQYLVDVTEIFNMLNWEKKRRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLS+FWMIY ALEDDE
Sbjct: 121 FLSIFWMIYSALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. NCBI nr
Match: XP_023005595.1 (protein cornichon homolog 4-like [Cucurbita maxima] >KAG6596832.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.2 bits (692), Expect = 5.0e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLSVFWMIYYALEDDE
Sbjct: 121 FLSVFWMIYYALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. NCBI nr
Match: XP_023539252.1 (protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 6.5e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHL+DVTEIFNMLNWEKKQRLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLVDVTEIFNMLNWEKKQRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLSVFWMIYYALEDDE
Sbjct: 121 FLSVFWMIYYALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. NCBI nr
Match: XP_022943501.1 (protein cornichon homolog 4-like [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSAS+INKVIFPEFISMGVLC
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASQINKVIFPEFISMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLSVFWMIYYALEDDE
Sbjct: 121 FLSVFWMIYYALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. NCBI nr
Match: XP_038876883.1 (protein cornichon homolog 4-like [Benincasa hispida])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDLYVWLVSFFFLIALLIVL+YQLMCLADLEFDYINPYDSASRINKVI PEF+S+GVLC
Sbjct: 1   MGDLYVWLVSFFFLIALLIVLVYQLMCLADLEFDYINPYDSASRINKVILPEFVSVGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMS++CGPYIYYNVR+YLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL
Sbjct: 61  LFYLLTGHWGMSMICGPYIYYNVRLYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLS+FWMIY ALEDDE
Sbjct: 121 FLSIFWMIYSALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. NCBI nr
Match: XP_008448916.1 (PREDICTED: protein cornichon homolog 4 isoform X1 [Cucumis melo] >XP_008448917.1 PREDICTED: protein cornichon homolog 4 isoform X1 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 8.2e-64
Identity = 124/136 (91.18%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           M DLYVWLVSFFFLIALLIVL+YQLMCLADLEFDYINPYDSASRINKVI PEF++MGVLC
Sbjct: 1   MEDLYVWLVSFFFLIALLIVLVYQLMCLADLEFDYINPYDSASRINKVIMPEFVAMGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           LFYLLTGHWGMS+LCGPYIYYNVR+YLRRQ+L+DVTEIFNMLNWEKKQRLFKLAYLV LL
Sbjct: 61  LFYLLTGHWGMSMLCGPYIYYNVRLYLRRQYLVDVTEIFNMLNWEKKQRLFKLAYLVVLL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FLS+FWMIY+ALEDDE
Sbjct: 121 FLSIFWMIYHALEDDE 136

[Close]

BLAST of CmaCh06G007480.1 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 212.2 bits (539), Expect = 2.6e-55
Identity = 99/136 (72.79%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGD++ WL+SFFFLIAL+ +++YQL+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           +FYLLTGHW M++LC PY+YYN  +Y +RQHL+DVTEIFN+LNWEKK+RLFKLAY+V  L
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FL++FWMIY AL+D E
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]

BLAST of CmaCh06G007480.1 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-48
Identity = 88/136 (64.71%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MG+++ W++SF  LI LL +++YQL+ LADLEFDYINPYDSASRIN V+ PE I  G LC
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           +FYL+TGHW M++LC PY+YYN  +Y R+QHLIDVTEIFN+L+WEKK+RLFKLAY++  L
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSVFWMIYYALEDDE 137
           FL++FW+IY  L+D E
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]

BLAST of CmaCh06G007480.1 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-47
Identity = 85/115 (73.91%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 22  IYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLFYLLTGHWGMSILCGPYIYY 81
           I+ L+CLADLEFDYINPYDSASRIN V+ PEFI  GVLC+FYLLTGHW M++LC PY+YY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFLSVFWMIYYALEDDE 137
           N  +Y +RQHL+DVTEIFN+LNWEKK+RLFKLAY+V  LFL++FWMIY AL+D E
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

[Close]

BLAST of CmaCh06G007480.1 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-40
Identity = 71/134 (52.99%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MGDLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLC 60
           MGDL  W++SF FL  L+I++IYQL CLADLEFD INPYD +SRIN+++ PEF   G+LC
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  LFYLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLL 120
           L+Y+LTGHW M++L  P+++YN+R+Y++R+HL DVTE++N   WE+K+R++K+ ++   +
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSVFWMIYYALED 135
           F++ +W+I+ AL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]

BLAST of CmaCh06G007480.1 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-28
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 3   DLYVWLVSFFFLIALLIVLIYQLMCLADLEFDYINPYDSASRINKVIFPEFISMGVLCLF 62
           DL++W+VSFF  +AL+  + YQ++CL DLE DY+NP+++++RIN+++ PEFI  G LCL 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWGMSILCGPYIYYNVRMYLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVFLLFL 122
           +LLT HW   ++  P   Y+  +Y  R++LIDVTE+F  +++EKK R  KL + VFL  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SVFWM----IYYALEDDE 137
            VF +    +Y   EDD+
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

The following BLAST results are available for this feature:

BLAST of CmaCh06G007480.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W04	3.6e-54	72.79	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	3.3e-47	64.71	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q3EDD7	4.7e-46	73.91	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q9SZ74	3.3e-39	52.99	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q9C7D7	2.9e-27	44.93	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of CmaCh06G007480.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXU1	2.4e-69	100.00	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111498534 PE=...	[more]
A0A6J1FRW5	7.0e-69	99.26	protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111448252 P...	[more]
A0A1S3BLR3	4.0e-64	91.18	protein cornichon homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490940 P...	[more]
A0A0A0L2G6	3.4e-63	91.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036490 PE=3 SV=1	[more]
A0A6J1HL36	7.5e-63	88.24	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465137 PE=...	[more]

BLAST of CmaCh06G007480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005595.1	5.0e-69	100.00	protein cornichon homolog 4-like [Cucurbita maxima] >KAG6596832.1 Protein cornic...	[more]
XP_023539252.1	6.5e-69	99.26	protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022943501.1	1.4e-68	99.26	protein cornichon homolog 4-like [Cucurbita moschata]	[more]
XP_038876883.1	1.5e-65	93.38	protein cornichon homolog 4-like [Benincasa hispida]	[more]
XP_008448916.1	8.2e-64	91.18	PREDICTED: protein cornichon homolog 4 isoform X1 [Cucumis melo] >XP_008448917.1...	[more]

BLAST of CmaCh06G007480.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12390.1	2.6e-55	72.79	Cornichon family protein	[more]
AT1G62880.1	2.3e-48	64.71	Cornichon family protein	[more]
AT1G12340.1	3.3e-47	73.91	Cornichon family protein	[more]
AT4G12090.1	2.3e-40	52.99	Cornichon family protein	[more]
AT3G12180.1	2.0e-28	44.93	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 4..125 e-value: 1.1E-55 score: 200.9
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 5..125 e-value: 1.7E-39 score: 134.9
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 1..135
None	No IPR available	PANTHER	PTHR12290:SF39	PROTEIN CORNICHON HOMOLOG 4-LIKE	coord: 1..135

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G007480	CmaCh06G007480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007480.1:exon:668	CmaCh06G007480.1:exon:668	exon
CmaCh06G007480.1:exon:667	CmaCh06G007480.1:exon:667	exon
CmaCh06G007480.1:exon:666	CmaCh06G007480.1:exon:666	exon
CmaCh06G007480.1:exon:665	CmaCh06G007480.1:exon:665	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007480.1:three_prime_utr	CmaCh06G007480.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007480.1:cds	CmaCh06G007480.1:cds_4	CDS
CmaCh06G007480.1:cds	CmaCh06G007480.1:cds_3	CDS
CmaCh06G007480.1:cds	CmaCh06G007480.1:cds_2	CDS
CmaCh06G007480.1:cds	CmaCh06G007480.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007480.1	CmaCh06G007480.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane