CmaCh06G007310.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G007310.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	histone deacetylase complex subunit SAP18-like
Location	Cma_Chr06: 3704505 .. 3706179 (+)
Sequence length	761
RNA-Seq Expression	CmaCh06G007310.1
Synteny	CmaCh06G007310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAGAAGCTCAGTAACACACCGACCCATGGACAAGAGAAGCAGGGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTTCCTCCGCCGTCTCAGGCCAAAGCCCCGCCGCCGCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTCTTAGGGCTTGCTTCTTCCTCTCGTTTTTTTTTTTCTTTTCTTCACACCGCTGAGATAAGTTCACGGTTTTTTGAATCTTTGTTTGTTATTCAAATGAAACTTATCTGCTTTTCGTTTTGTTGCAATTTTCGCTTCCTTCCGTGATGGTGATTTCAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTGCGTTTGAATTCTTTGAGAAGCCTTCTTGTTCGATTTATCTTTGTTCTTTTAAAATTTGAGATGATTGTGATATGTGTCATGGCGGAAAATGTCCTGTTTTCGGTTCTTGGTATCTGTTTGACATTGTCGACCTGCTACCTTTTATGATACTTCTGAGTTTATTAGCGATTGTGCATTTCTTATACTTCGTTCCATGATTTTTGTTGTGTGAAGATTATGTTGAAGGGTCCTTTTTCCACATGATTTTTTTTCTTGATTGGTGCACTTGGGAGGAGTAATGAGAAAACTTCACTTTGATATTAGAATTGGCGTGGGGTTCAGTTCATATATTCACATCTTACTGCAGACGGTATACAGGATATGCTTCATTTACATTTTTGCAGGTTGGAAGTCACCACACCGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTATGCAGAAAACCTACACTGTTCTGTTTCTTTTCTATCGTTTCTCCATCTGTTCTTGCTGCTTCTGTTCTGTATTTGATAAATGGCCGTCTGCTTTCAGGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGGAATGCCAAACTTTCTTTTGCCTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACCGGTGAGTGATCGTTAACAAAAATGTCACCTGCAGACTTCAAATTTTACCTAATCATTTATCTCATATACAATTGTACTAAATGTTTAGCTGTTCACTTCCTAAATGCACTACTTGTATAGATAAATTGTTGTGATTTCTTAATATGAAGACGTTTTGATCATTCTTAAGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGATTAGATGGCAGCAAGGCATTGGGTGAACTGGATTTCCAGGTAAAAGTTAACATTAGGGCTCTTGAATTGAGTTTCTTGCAAGTTCTGAGGAAACTGATGTTTCTTCTGCTATGTTTTTGAATTTGAAAAATGTAGATTGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGGAAGTGATGATGCTACTATTTAGTTGGAGAGTGAGTGTTATCAAATGTTTTCTGCATTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACATATTGTATTGATGGTGACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTGCTTTTAGATCTCTATGTTTTACA

mRNA sequence

AATCAGAAGCTCAGTAACACACCGACCCATGGACAAGAGAAGCAGGGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTTCCTCCGCCGTCTCAGGCCAAAGCCCCGCCGCCGCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGGAATGCCAAACTTTCTTTTGCCTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGATTAGATGGCAGCAAGGCATTGGGTGAACTGGATTTCCAGATTGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGGAAGTGATGATGCTACTATTTAGTTGGAGAGTGAGTGTTATCAAATGTTTTCTGCATTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACATATTGTATTGATGGTGACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTGCTTTTAGATCTCTATGTTTTACA

Coding sequence (CDS)

ATGGACAAGAGAAGCAGGGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTTCCTCCGCCGTCTCAGGCCAAAGCCCCGCCGCCGCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGGAATGCCAAACTTTCTTTTGCCTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGATTAGATGGCAGCAAGGCATTGGGTGAACTGGATTTCCAGATTGGAGATTATTTGGACGTGGCAATCATGTAG

Protein sequence

MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM

Homology

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-48
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 13  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + ++ V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy TrEMBL
Match: A0A6J1KTJ0 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111498523 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy TrEMBL
Match: A0A6J1G3G8 (histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=LOC111450421 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy TrEMBL
Match: A0A6J1DES5 (histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN=LOC111020386 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 158/166 (95.18%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy TrEMBL
Match: A0A0A0L751 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.3e-80
Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310.1 vs. ExPASy TrEMBL
Match: A0A5D3D7E1 (Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001050 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310.1 vs. NCBI nr
Match: XP_022946300.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_023005582.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima] >XP_023539983.1 histone deacetylase complex subunit SAP18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of CmaCh06G007310.1 vs. NCBI nr
Match: KAG6596815.1 (Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.8 bits (839), Expect = 5.5e-86
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF
Sbjct: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 77

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 78  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 137

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM
Sbjct: 138 PDKRGRFVLKLVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 183

[Close]

BLAST of CmaCh06G007310.1 vs. NCBI nr
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 158/166 (95.18%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQ KAPPPPPR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310.1 vs. NCBI nr
Match: XP_004147963.1 (histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_009634 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310.1 vs. NCBI nr
Match: XP_008448944.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK19452.1 histone deacetylase complex subunit SAP18-like [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 3.8e-79
Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310.1 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 191.4 bits (485), Expect = 5.7e-49
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 13  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + ++ V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmaCh06G007310.1 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47
Identity = 102/153 (66.67%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 13  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G +    V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NV 121

Query: 133 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:

BLAST of CmaCh06G007310.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	8.0e-48	66.67	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	1.6e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	1.6e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	1.6e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	2.0e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of CmaCh06G007310.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTJ0	1.8e-87	100.00	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1G3G8	1.8e-87	100.00	histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1DES5	1.4e-82	95.18	histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0L751	6.3e-80	92.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1	[more]
A0A5D3D7E1	1.8e-79	92.77	Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CmaCh06G007310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946300.1	3.8e-87	100.00	histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >XP_02300558...	[more]
KAG6596815.1	5.5e-86	99.40	Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp...	[more]
XP_022152730.1	2.8e-82	95.18	histone deacetylase complex subunit SAP18-like [Momordica charantia]	[more]
XP_004147963.1	1.3e-79	92.77	histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothet...	[more]
XP_008448944.1	3.8e-79	92.77	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK194...	[more]

BLAST of CmaCh06G007310.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	5.7e-49	66.67	SIN3 associated polypeptide P18	[more]
AT2G45640.2	4.1e-47	66.67	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 38..166 e-value: 2.1E-45 score: 155.8
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 46..165 e-value: 1.7E-38 score: 132.0
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 14..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 14..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G007310	CmaCh06G007310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007310.1:exon:1137	CmaCh06G007310.1:exon:1137	exon
CmaCh06G007310.1:exon:1138	CmaCh06G007310.1:exon:1138	exon
CmaCh06G007310.1:exon:1139	CmaCh06G007310.1:exon:1139	exon
CmaCh06G007310.1:exon:1140	CmaCh06G007310.1:exon:1140	exon
CmaCh06G007310.1:exon:1141	CmaCh06G007310.1:exon:1141	exon
CmaCh06G007310.1:exon:1142	CmaCh06G007310.1:exon:1142	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007310.1:five_prime_utr	CmaCh06G007310.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007310.1:cds	CmaCh06G007310.1:cds	CDS
CmaCh06G007310.1:cds	CmaCh06G007310.1:cds_2	CDS
CmaCh06G007310.1:cds	CmaCh06G007310.1:cds_3	CDS
CmaCh06G007310.1:cds	CmaCh06G007310.1:cds_4	CDS
CmaCh06G007310.1:cds	CmaCh06G007310.1:cds_5	CDS
CmaCh06G007310.1:cds	CmaCh06G007310.1:cds_6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007310.1:three_prime_utr	CmaCh06G007310.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007310.1	CmaCh06G007310.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity