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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGGAAAGAAAAGAAAATAGATCGTTGGACCACCTCCTAGGCTTCTCCCACGCCCTCTGCCCCTTCAGCACCGCCGTGGTTGTGGTTGTCGTCGCCGTTGCTTTGAGTGCCGGTGCTATTTCTTCCTTTGTGCCCAAGATTTACTCCTTCGATCTTCTTCTTCTATCTCGATCGCAGGTACTCTTCTCAGTCACTATCACTTGTCTTTCAACGAAAAAGTCTGCAAGATTGTTGTAGTAGTTCATGAACTGATCAGAACCAAATCCTGAAAATCGACATAACCGGATTGTGGAGAACTAGTTTTGTTCAATCATGGTCTGTGGTTCCAATTTCTCAAACCGAAAACATTGGTTCGATTCCTGGTTTAGTGAAAAGTTGTGGAGATGGAACCGATGCTCACATCCTTTACCAAAACGAAAATTTGGAACGAAATGAAAAACCAAAGCGGGGATTCTCGCGCTCTCTCTATATCTCTCTCTTCCCCGTATCAGTCGTTTTCTTCTCCCTTGTACTGTATCTCTTTCTCTCTCCCTCATTGAGCTTGGTTTTGAAGGTATGGTCAGTGGAGGTTTCCGTTGAATCGTTCACTATCGTTGTTTCTGTTTCCATTTGACACTGTTATTTTGATACTTGTAGATTCATGTACAATGAACAAAAAGTGCACTCAAATGGTTGATATTTACGATGAACAGCATTAAGAATACTAATTAAGAAGTGAGACATCCAAATGCCTATCCTCGATCTTCCTGTAGTTACTAACCTGGGAGGAGCTGAAAATTTACATAGGGAGGGGCTAAATTTTTATAATCTTTCAATTTGCGGCGACCAAATTAGAGAGTGAACTTCAAAATCTTGACCTTTTTAATATAAGTTTTCAATTTCAGACTTGTCAAGAGCGGGGCAATCTTTCCTTTTTCACCCTGCCCTTGGTTCTTAGGGGGGCCTTACATGTACCAAATGCTTTAATCGTTCATTTTTTCCCTTGATATTTTCATTTTTTGTGCAATGTTATTCACTAATGATTACCTTGGAAGAGCTGTTGCAACTAAATGTTATCTTTGTTTCATTTTCTTCATCAATGCAGTATTTTGGATACGGGTTAGGTCTGCCATATTTCAATGACATGAAGATGTGA mRNA sequence ATGTGGAAAGAAAAGAAAATAGATCGCTTCTCCCACGCCCTCTGCCCCTTCAGCACCGCCGTGGTTGTGGTTGTCGTCGCCGTTGCTTTGAGTGCCGGTGCTATTTCTTCCTTTGTGCCCAAGATTTACTCCTTCGATCTTCTTCTTCTATCTCGATCGCAGTATTTTGGATACGGGTTAGGTCTGCCATATTTCAATGACATGAAGATGTGA Coding sequence (CDS) ATGTGGAAAGAAAAGAAAATAGATCGCTTCTCCCACGCCCTCTGCCCCTTCAGCACCGCCGTGGTTGTGGTTGTCGTCGCCGTTGCTTTGAGTGCCGGTGCTATTTCTTCCTTTGTGCCCAAGATTTACTCCTTCGATCTTCTTCTTCTATCTCGATCGCAGTATTTTGGATACGGGTTAGGTCTGCCATATTTCAATGACATGAAGATGTGA Protein sequence MWKEKKIDRFSHALCPFSTAVVVVVVAVALSAGAISSFVPKIYSFDLLLLSRSQYFGYGLGLPYFNDMKM
Homology
BLAST of CmaCh06G005630.1 vs. NCBI nr
Match: KAG6596654.1 (hypothetical protein SDJN03_09834, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17 Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0
Query: 11 SHALCPFSTA--VVVVVVAVALSAGAISSFVPKIYSFDLLLLSRSQYFGYGLGLPYFNDM 70
SHALCPFSTA VVVVVVAVALSAGA SFVPKIYSFDLLLLSRSQYFGYG LPYF DM
Sbjct: 15 SHALCPFSTAVVVVVVVVAVALSAGATPSFVPKIYSFDLLLLSRSQYFGYGFCLPYFIDM 74
BLAST of CmaCh06G005630.1 vs. NCBI nr
Match: KAG7028192.1 (hypothetical protein SDJN02_09372, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17 Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0
Query: 11 SHALCPFSTA--VVVVVVAVALSAGAISSFVPKIYSFDLLLLSRSQYFGYGLGLPYFNDM 70
SHALCPFSTA VVVVVVAVALSAGA SFVPKIYSFDLLLLSRSQYFGYG LPYF DM
Sbjct: 6 SHALCPFSTAVVVVVVVVAVALSAGATPSFVPKIYSFDLLLLSRSQYFGYGFCLPYFIDM 65
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6596654.1 | 1.3e-17 | 88.71 | hypothetical protein SDJN03_09834, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7028192.1 | 1.3e-17 | 88.71 | hypothetical protein SDJN02_09372, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G005630.1:exon:1650 | CmaCh06G005630.1:exon:1650 | exon |
| CmaCh06G005630.1:exon:1649 | CmaCh06G005630.1:exon:1649 | exon |
| CmaCh06G005630.1:exon:1648 | CmaCh06G005630.1:exon:1648 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G005630.1:cds | CmaCh06G005630.1:cds_3 | CDS |
| CmaCh06G005630.1:cds | CmaCh06G005630.1:cds_2 | CDS |
| CmaCh06G005630.1:cds | CmaCh06G005630.1:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G005630.1 | CmaCh06G005630.1-protein | polypeptide |
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