CmaCh06G005530.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G005530.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	VQ domain-containing protein
Location	Cma_Chr06: 2628780 .. 2629112 (+)
Sequence length	333
RNA-Seq Expression	CmaCh06G005530.1
Synteny	CmaCh06G005530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGACGATTTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAACGGATCGTCCCTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGGTCATCCTGACGAGGAATGTGTATCGGCCTGCAATTACATTCCGTCGTAG

mRNA sequence

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGACGATTTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAACGGATCGTCCCTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGGTCATCCTGACGAGGAATGTGTATCGGCCTGCAATTACATTCCGTCGTAG

Coding sequence (CDS)

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGACGATTTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAACGGATCGTCCCTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGGTCATCCTGACGAGGAATGTGTATCGGCCTGCAATTACATTCCGTCGTAG

Protein sequence

MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS

Homology

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-07
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 11 LRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVR 70
          L++ GPRP PL+V+K S  I  K    +  P PNR        R+PV++Y  SPK++H  
Sbjct: 22 LQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 81

Query: 71 PEEFKSFVQRLTGNGSSL 81
            EF + VQRLTG  S +
Sbjct: 82 ASEFMNVVQRLTGISSGV 97

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 16  PRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG 75
           P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          + G RP  L +   S TI KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQ
Sbjct: 9  INGSRPSSLKLAGESHTI-KKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 68

Query: 73 RLTG 76
          RLTG
Sbjct: 69 RLTG 71

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 31/90 (34.44%), Postives = 40/90 (44.44%), Query Frame = 0


Query: 15  GPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GP+P PL V   S  I KK       P P                  PV +Y  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 75  VRPEEFKSFVQRLTGNGSSLAVVAASFSAT 91
             P  F + VQRLTG  S+    ++S S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy TrEMBL
Match: A0A5D3DP92 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004940 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.6e-31
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTTIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 6   TAARNQ--SQLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 65

Query: 63  RPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           RPEEFKSFVQRLTGN SS+AVVA+S SA+GMI  H  EE  SACN IPS
Sbjct: 66  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 109

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy TrEMBL
Match: A0A1S3B975 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.6e-31
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTTIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 4   TAARNQ--SQLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 63

Query: 63  RPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           RPEEFKSFVQRLTGN SS+AVVA+S SA+GMI  H  EE  SACN IPS
Sbjct: 64  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy TrEMBL
Match: A0A0A0LEW5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.8e-29
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 2   NSAARNQLPLRLRGPRPPPLTVNKSSTT-IFKKSTTTNLRPIPN---RRDPVIVYLRSPK 61
           ++AARN    +LRGPRPPPLTVNKSS+T I KKST  N  PI N   RR P+I+YLRSPK
Sbjct: 5   SAAARNH--SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPK 64

Query: 62  IIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           +IHVRPEEFKSFVQRLTGN SS+AVVA+S SATGMI    DEE VS CN IPS
Sbjct: 65  VIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMI---NDEEFVSVCNCIPS 112

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy TrEMBL
Match: A0A2N9GB07 (VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-13
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 1  MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPN--RRDPVIVYLRSPKI 60
          M+S  R +  L+L+GPRP PLTVNKSST I K       +P+PN  R  PVI+YL+SPK+
Sbjct: 1  MDSQTRKKY-LQLQGPRPAPLTVNKSSTKIKK-------QPLPNRTRSSPVIIYLQSPKV 60

Query: 61 IHVRPEEFKSFVQRLTGNGSSLAVVAASFS 89
          IHVRPEEF   VQ+LTGN +   V A S S
Sbjct: 61 IHVRPEEFMGIVQQLTGNQAPSRVAADSSS 82

[Close]

BLAST of CmaCh06G005530.1 vs. ExPASy TrEMBL
Match: A0A1R3JJT0 (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTTIFKK-STTTNLRPIPNRR----DPVIVYLRSPKIIHVRPEEFK 72
          L+GPRP PL V+ +S+ I KK STT++L+   N R    DPV++YLRSPKIIHVRPEEF 
Sbjct: 10 LQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKIIHVRPEEFM 69

Query: 73 SFVQRLTGNGSSLAVVAA 86
          S VQRLTG  S+ A  ++
Sbjct: 70 SLVQRLTGKDSTTATTSS 87

[Close]

BLAST of CmaCh06G005530.1 vs. NCBI nr
Match: KAG6596645.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028183.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIH 60
           MNSAARNQLPLRLRGPRPPPLTVNKSST IFKKSTTTNLRPIPNRRDPVIVYLRSPKIIH
Sbjct: 1   MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIH 60

Query: 61  VRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           VRPEEFKSFVQRLTGNGSS+AVVAASFSATGMIA HP E CVSACNYIPS
Sbjct: 61  VRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVCVSACNYIPS 110

[Close]

BLAST of CmaCh06G005530.1 vs. NCBI nr
Match: KAA0043778.1 (protein MKS1-like [Cucumis melo var. makuwa] >TYK25355.1 protein MKS1-like [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 7.4e-31
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTTIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 6   TAARNQ--SQLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 65

Query: 63  RPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           RPEEFKSFVQRLTGN SS+AVVA+S SA+GMI  H  EE  SACN IPS
Sbjct: 66  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 109

[Close]

BLAST of CmaCh06G005530.1 vs. NCBI nr
Match: XP_008443599.1 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 7.4e-31
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTTIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 4   TAARNQ--SQLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 63

Query: 63  RPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           RPEEFKSFVQRLTGN SS+AVVA+S SA+GMI  H  EE  SACN IPS
Sbjct: 64  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of CmaCh06G005530.1 vs. NCBI nr
Match: KGN59247.1 (hypothetical protein Csa_002000 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 2   NSAARNQLPLRLRGPRPPPLTVNKSSTT-IFKKSTTTNLRPIPN---RRDPVIVYLRSPK 61
           ++AARN    +LRGPRPPPLTVNKSS+T I KKST  N  PI N   RR P+I+YLRSPK
Sbjct: 5   SAAARNH--SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPK 64

Query: 62  IIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           +IHVRPEEFKSFVQRLTGN SS+AVVA+S SATGMI    DEE VS CN IPS
Sbjct: 65  VIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMI---NDEEFVSVCNCIPS 112

[Close]

BLAST of CmaCh06G005530.1 vs. NCBI nr
Match: KAG6690545.1 (hypothetical protein I3842_10G021000 [Carya illinoinensis] >KAG7958426.1 hypothetical protein I3843_10G020800 [Carya illinoinensis])

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   MNSAARN-----QLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNR--RDPVIVYL 60
           MNS A N     Q+  +L+GPRP P+TV+KSS  I K        P P+R  R PVI+YL
Sbjct: 1   MNSIAENPLLSSQIRKQLQGPRPAPVTVSKSSIKIKK--------PFPSRKSRSPVIIYL 60

Query: 61  RSPKIIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEE 101
           +SPK+IHVRPEEF   VQRLTGN +     A+S+S +      P +E
Sbjct: 61  QSPKVIHVRPEEFMCTVQRLTGNQAHSVAAASSYSYSSTSCVMPADE 99

[Close]

BLAST of CmaCh06G005530.1 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 11 LRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVR 70
          L++ GPRP PL+V+K S  I  K    +  P PNR        R+PV++Y  SPK++H  
Sbjct: 22 LQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 81

Query: 71 PEEFKSFVQRLTGNGSSL 81
            EF + VQRLTG  S +
Sbjct: 82 ASEFMNVVQRLTGISSGV 97

[Close]

BLAST of CmaCh06G005530.1 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-08
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 16  PRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG 75
           P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CmaCh06G005530.1 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          + G RP  L +   S TI KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQ
Sbjct: 9  INGSRPSSLKLAGESHTI-KKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 68

Query: 73 RLTG 76
          RLTG
Sbjct: 69 RLTG 71

[Close]

BLAST of CmaCh06G005530.1 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 33/90 (36.67%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 15  GPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GPRP PL V   S  I KK       P P                  PVI+Y  SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 75  VRPEEFKSFVQRLTGNGSSLAVVAASFSAT 91
             P  F + VQRLTG  +S +  ++S+S++
Sbjct: 73  THPNNFMTLVQRLTGK-TSTSTTSSSYSSS 101

[Close]

BLAST of CmaCh06G005530.1 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 31/90 (34.44%), Postives = 40/90 (44.44%), Query Frame = 0


Query: 15  GPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GP+P PL V   S  I KK       P P                  PV +Y  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 75  VRPEEFKSFVQRLTGNGSSLAVVAASFSAT 91
             P  F + VQRLTG  S+    ++S S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

The following BLAST results are available for this feature:

BLAST of CmaCh06G005530.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	2.7e-07	42.31	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
Q9LS54	1.0e-06	43.33	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	1.7e-06	46.88	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4HWF9	1.6e-04	34.44	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of CmaCh06G005530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP92	3.6e-31	74.31	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A1S3B975	3.6e-31	74.31	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1	[more]
A0A0A0LEW5	9.8e-29	70.80	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=...	[more]
A0A2N9GB07	4.4e-13	55.56	VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 ...	[more]
A0A1R3JJT0	1.7e-12	57.69	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 P...	[more]

BLAST of CmaCh06G005530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596645.1	4.2e-50	95.45	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAA0043778.1	7.4e-31	74.31	protein MKS1-like [Cucumis melo var. makuwa] >TYK25355.1 protein MKS1-like [Cucu...	[more]
XP_008443599.1	7.4e-31	74.31	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
KGN59247.1	2.0e-28	70.80	hypothetical protein Csa_002000 [Cucumis sativus]	[more]
KAG6690545.1	2.6e-12	47.66	hypothetical protein I3842_10G021000 [Carya illinoinensis] >KAG7958426.1 hypothe...	[more]

BLAST of CmaCh06G005530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	1.9e-08	42.31	MAP kinase substrate 1	[more]
AT3G18360.1	7.2e-08	43.33	VQ motif-containing protein	[more]
AT1G68450.1	1.2e-07	46.88	VQ motif-containing protein	[more]
AT1G21326.1	2.3e-06	36.67	VQ motif-containing protein	[more]
AT1G21320.1	1.1e-05	34.44	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 55..78 e-value: 8.1E-8 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33143:SF51	PROTEIN MKS1-LIKE	coord: 2..91
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 2..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G005530	CmaCh06G005530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G005530.1:exon:2753	CmaCh06G005530.1:exon:2753	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G005530.1:cds	CmaCh06G005530.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G005530.1	CmaCh06G005530.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus