CmaCh06G004810.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004810.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SRP54 domain-containing protein
Location	Cma_Chr06: 2269492 .. 2270001 (-)
Sequence length	414
RNA-Seq Expression	CmaCh06G004810.1
Synteny	CmaCh06G004810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAAAAAAAAAAAAGGAAAAATAAAGAAAAAGAATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGTGGTGCAGGTTCCCGGTTTCCGGCTGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCATGTAACGGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGTAAAATTTTAGATTTATTTAGATTTTTTCTTTTAAAAATAATTATTATTTCAAAAATTATAAACTGAAATAAATAATTTGTGGAAAATCTGACAGGAGCAAGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCATCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTCGTTAAGAAATTACGACAAAACTGATTCTCTTCTCCCTCAACTTTGCTCCTCCCTGTCTTCTCCAAATTTTTTATTTTGTATTTTT

mRNA sequence

AAAAAGAAAAAAAAAAAAAAAAGGAAAAATAAAGAAAAAGAATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGTGGTGCAGGTTCCCGGTTTCCGGCTGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCATGTAACGGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGAGCAAGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCATCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTCGTTAAGAAATTACGACAAAACTGATTCTCTTCTCCCTCAACTTTGCTCCTCCCTGTCTTCTCCAAATTTTTTATTTTGTATTTTT

Coding sequence (CDS)

ATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGTGGTGCAGGTTCCCGGTTTCCGGCTGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCATGTAACGGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGAGCAAGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCATCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTCGTTAAGAAATTACGACAAAACTGA

Protein sequence

MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN

Homology

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BLAST of CmaCh06G004810.1 vs. ExPASy TrEMBL
Match: A0A6J1KYC8 (uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.1e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CmaCh06G004810.1 vs. ExPASy TrEMBL
Match: A0A6J1G5S8 (uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC111451047 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEERKQAKKKDTMQTLKTTFIVSGV+AAVAVAAFVVVKKLRQN
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CmaCh06G004810.1 vs. ExPASy TrEMBL
Match: A0A6J1CUK2 (uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014362 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.8e-32
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEERK+AKK DTM+TLKTTFIVSGVIAAVAVAAF +VKKLR+N
Sbjct: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of CmaCh06G004810.1 vs. ExPASy TrEMBL
Match: A0A6J1J505 (uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MAS  RDGG T  AGSRFP VD +REL+PGHN+ V VDPISS+ AAS+  KEQ KRKA  
Sbjct: 1   MASSDRDGGVTNAAGSRFPGVDGERELNPGHNKQVDVDPISSEAAASLVIKEQEKRKA-A 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEER +AKKK+ MQTLK  FIVS VIAAVAV AF +VKKLR+N
Sbjct: 61  EEERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKKLREN 102

[Close]

BLAST of CmaCh06G004810.1 vs. ExPASy TrEMBL
Match: A0A0A0LBF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 9   GATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAK 68
           G+ G  G  FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  +E ++  K
Sbjct: 2   GSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKK 61

Query: 69  KKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           KK+ MQTLKTTFIVSG+IAAVAVAAF +VKKLR+N
Sbjct: 62  KKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CmaCh06G004810.1 vs. NCBI nr
Match: XP_023005785.1 (uncharacterized protein LOC111498680 [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CmaCh06G004810.1 vs. NCBI nr
Match: XP_022947065.1 (uncharacterized protein LOC111451047 [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEERKQAKKKDTMQTLKTTFIVSGV+AAVAVAAFVVVKKLRQN
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CmaCh06G004810.1 vs. NCBI nr
Match: KAG6596576.1 (Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 5   GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEER 64
           GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEER
Sbjct: 471 GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEER 530

Query: 65  KQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           +QAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN
Sbjct: 531 EQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 569

[Close]

BLAST of CmaCh06G004810.1 vs. NCBI nr
Match: XP_023539528.1 (uncharacterized protein LOC111800168 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 5.5e-36
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 15  GSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQ 74
           GSRFPAVDVDRELHPGHNQHV VDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQ
Sbjct: 3   GSRFPAVDVDRELHPGHNQHVAVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQ 62

Query: 75  TLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           TLKTTFIVSGV+AAVAVAAFVVVKKLRQN
Sbjct: 63  TLKTTFIVSGVVAAVAVAAFVVVKKLRQN 91

[Close]

BLAST of CmaCh06G004810.1 vs. NCBI nr
Match: XP_022144747.1 (uncharacterized protein LOC111014362 [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-31
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           EEERK+AKK DTM+TLKTTFIVSGVIAAVAVAAF +VKKLR+N
Sbjct: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of CmaCh06G004810.1 vs. TAIR 10
Match: AT3G52620.1 (unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-11
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 18  FPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAK-KKDTMQTL 77
           FP  D + EL+PG N++  VDP+SS++A+    K        + E+R+ AK K+D  +TL
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIASEKVQK--------IVEKRENAKAKRDGARTL 67

Query: 78  KTTFIVSGVIAAVAVAAFVVVKKLRQN 104
           K T IVS VI AVA AAF + KKL++N
Sbjct: 68  KNTIIVSAVIVAVAGAAFAITKKLKEN 86

The following BLAST results are available for this feature:

BLAST of CmaCh06G004810.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G004810.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYC8	9.1e-45	100.00	uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680...	[more]
A0A6J1G5S8	1.2e-44	99.03	uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1CUK2	6.8e-32	78.64	uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1J505	6.1e-25	69.90	uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798...	[more]
A0A0A0LBF7	2.0e-23	67.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1	[more]

BLAST of CmaCh06G004810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005785.1	1.9e-44	100.00	uncharacterized protein LOC111498680 [Cucurbita maxima]	[more]
XP_022947065.1	2.5e-44	99.03	uncharacterized protein LOC111451047 [Cucurbita moschata]	[more]
KAG6596576.1	1.1e-41	98.99	Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023539528.1	5.5e-36	97.75	uncharacterized protein LOC111800168 [Cucurbita pepo subsp. pepo]	[more]
XP_022144747.1	1.4e-31	78.64	uncharacterized protein LOC111014362 [Momordica charantia]	[more]

BLAST of CmaCh06G004810.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52620.1	5.0e-11	45.98	unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..66
None	No IPR available	PANTHER	PTHR37741	TRANSMEMBRANE PROTEIN	coord: 1..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G004810	CmaCh06G004810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004810.1:exon:1879	CmaCh06G004810.1:exon:1879	exon
CmaCh06G004810.1:exon:1878	CmaCh06G004810.1:exon:1878	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004810.1:three_prime_utr	CmaCh06G004810.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004810.1:cds	CmaCh06G004810.1:cds_2	CDS
CmaCh06G004810.1:cds	CmaCh06G004810.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004810.1:five_prime_utr	CmaCh06G004810.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004810.1	CmaCh06G004810.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane