CmaCh06G004650.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004650.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LITTLE ZIPPER 4
Location	Cma_Chr06: 2205759 .. 2205971 (+)
Sequence length	213
RNA-Seq Expression	CmaCh06G004650.1
Synteny	CmaCh06G004650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGCTAAATTCGGATCTGTATTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTACAGAACTGAAGCAGAAATTGTCCAAAGGGAAGACAAAATCGATCCCTGATCTTAATCTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCCCGTTGA

mRNA sequence

ATGGAGAGGCTAAATTCGGATCTGTATTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTACAGAACTGAAGCAGAAATTGTCCAAAGGGAAGACAAAATCGATCCCTGATCTTAATCTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCCCGTTGA

Coding sequence (CDS)

ATGGAGAGGCTAAATTCGGATCTGTATTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCTTACAGAACTGAAGCAGAAATTGTCCAAAGGGAAGACAAAATCGATCCCTGATCTTAATCTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCCCGTTGA

Protein sequence

MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTKSIPDLNLCSASLTNPSNSSR

Homology

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy Swiss-Prot
Match: Q56WL5 (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTKS 52
          MERLNS LYLQNCYI+KENERLRKKAQILNQENQ LL ELKQKLSK K  S
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSS 51

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy Swiss-Prot
Match: Q9LXI8 (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-13
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTKS 52
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSN 51

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy TrEMBL
Match: A0A6J1CT31 (protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKG------KTKSIPD 60
          MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALL+ELKQKLSKG       +KSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLCSASLTNPSNSS 70
          LNL SAS+TNPSNS+
Sbjct: 61 LNLSSASVTNPSNST 75

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy TrEMBL
Match: A0A067F196 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047813mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK---SIPDLNL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKL+ G +K   +IPDLNL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy TrEMBL
Match: V4S7L4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013416mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK---SIPDLNL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKL+ G +K   +IPDLNL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy TrEMBL
Match: A0A6J1ARG7 (protein LITTLE ZIPPER 4 OS=Herrania umbratica OX=108875 GN=LOC110420723 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1   MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK-----SIPDL 60
           MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKLSKG +K     +IPDL
Sbjct: 26  MERLNSNLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKGNSANTIPDL 85

Query: 61  NLCSASLTNPSNSSR 71
           NL S+S  NPSNSS+
Sbjct: 86  NLSSSSNPNPSNSSK 100

[Close]

BLAST of CmaCh06G004650.1 vs. ExPASy TrEMBL
Match: A0A6P6AQP1 (protein LITTLE ZIPPER 4-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111311732 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK-----SIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKLSK  +K     +IPDL
Sbjct: 1  MERLNSNLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKANSKGNSANTIPDL 60

Query: 61 NLCSASLTNPSNSSR 71
          NL S+S  NPSNSS+
Sbjct: 61 NLSSSSNPNPSNSSK 75

[Close]

BLAST of CmaCh06G004650.1 vs. NCBI nr
Match: KAG7028099.1 (Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTKSIPDLNLCSA 60
          MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALL+ELKQKLSKGKTKSIPDLNLCSA
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKSIPDLNLCSA 60

Query: 61 SLTNPSNSSR 71
          SLTNPSNSSR
Sbjct: 61 SLTNPSNSSR 70

[Close]

BLAST of CmaCh06G004650.1 vs. NCBI nr
Match: XP_022144704.1 (protein LITTLE ZIPPER 4 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 8.9e-22
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKG------KTKSIPD 60
          MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALL+ELKQKLSKG       +KSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLCSASLTNPSNSS 70
          LNL SAS+TNPSNS+
Sbjct: 61 LNLSSASVTNPSNST 75

[Close]

BLAST of CmaCh06G004650.1 vs. NCBI nr
Match: XP_024038073.1 (protein LITTLE ZIPPER 4 [Citrus clementina] >XP_024038074.1 protein LITTLE ZIPPER 4 [Citrus clementina] >ESR43473.1 hypothetical protein CICLE_v10013416mg [Citrus clementina] >KDO61118.1 hypothetical protein CISIN_1g047813mg [Citrus sinensis])

HSP 1 Score: 109.8 bits (273), Expect = 9.8e-21
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK---SIPDLNL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKL+ G +K   +IPDLNL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60

Query: 61 CSASLTNPSNSSR 71
          CS+S TNPSNSS+
Sbjct: 61 CSSSNTNPSNSSK 73

[Close]

BLAST of CmaCh06G004650.1 vs. NCBI nr
Match: XP_006481795.1 (protein LITTLE ZIPPER 4-like [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK-----SIPDL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKL+ G +K     +IPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKANAPNNIPDL 60

Query: 61 NLCSASLTNPSNSSR 71
          NLCS+S TNPSNSS+
Sbjct: 61 NLCSSSNTNPSNSSK 75

[Close]

BLAST of CmaCh06G004650.1 vs. NCBI nr
Match: XP_021908756.1 (protein LITTLE ZIPPER 4 [Carica papaya] >XP_021908757.1 protein LITTLE ZIPPER 4 [Carica papaya] >XP_021908758.1 protein LITTLE ZIPPER 4 [Carica papaya])

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTK-----SIPDL 60
          M+RLNS LYLQNCYIMKENERLRKKAQ+LNQENQALL+ELKQKLSKG +K     ++PDL
Sbjct: 1  MDRLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKGNQPSTLPDL 60

Query: 61 NLCSASLTNPSNSSR 71
          NLCS+S  NPSNSS+
Sbjct: 61 NLCSSSNANPSNSSK 75

[Close]

BLAST of CmaCh06G004650.1 vs. TAIR 10
Match: AT3G52770.1 (protein binding )

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-14
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQKLSKGKTKS 52
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSN 51

[Close]

BLAST of CmaCh06G004650.1 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1   MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLTELKQK 44
           ME +N  LY++N  I++ENE+L+KKA +L+QEN+ L + L+ K
Sbjct: 87  MEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:

BLAST of CmaCh06G004650.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56WL5	3.8e-15	86.27	Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1	[more]
Q9LXI8	3.5e-13	74.51	Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1	[more]

BLAST of CmaCh06G004650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CT31	4.3e-22	84.00	protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1	[more]
A0A067F196	4.8e-21	80.82	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047813mg PE=4 SV=1	[more]
V4S7L4	4.8e-21	80.82	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013416mg PE=4 ...	[more]
A0A6J1ARG7	4.0e-20	78.67	protein LITTLE ZIPPER 4 OS=Herrania umbratica OX=108875 GN=LOC110420723 PE=4 SV=...	[more]
A0A6P6AQP1	2.0e-19	77.33	protein LITTLE ZIPPER 4-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC11131...	[more]

BLAST of CmaCh06G004650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028099.1	3.2e-27	98.57	Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022144704.1	8.9e-22	84.00	protein LITTLE ZIPPER 4 [Momordica charantia]	[more]
XP_024038073.1	9.8e-21	80.82	protein LITTLE ZIPPER 4 [Citrus clementina] >XP_024038074.1 protein LITTLE ZIPPE...	[more]
XP_006481795.1	1.7e-20	78.67	protein LITTLE ZIPPER 4-like [Citrus sinensis]	[more]
XP_021908756.1	2.9e-20	77.33	protein LITTLE ZIPPER 4 [Carica papaya] >XP_021908757.1 protein LITTLE ZIPPER 4 ...	[more]

BLAST of CmaCh06G004650.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52770.1	2.5e-14	74.51	protein binding	[more]
AT2G45450.1	2.3e-04	48.84	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..70
None	No IPR available	PANTHER	PTHR33601:SF1	PROTEIN LITTLE ZIPPER 4	coord: 1..69
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G004650	CmaCh06G004650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004650.1:exon:3014	CmaCh06G004650.1:exon:3014	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004650.1:cds	CmaCh06G004650.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004650.1	CmaCh06G004650.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane