CmaCh06G004560.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004560.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RAB6-interacting golgin
Location	Cma_Chr06: 2118344 .. 2120275 (-)
Sequence length	929
RNA-Seq Expression	CmaCh06G004560.1
Synteny	CmaCh06G004560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGAGGGCAAGGCAAGCTGGGTTGGCACTTTCAAAAGGCTTTGTAGTTTTATAAGCGCTTGAAATACCCAGAGGAGAAAAAAGAATAGAAATACAGCACAAACCCCATCATTTCAAAAGCAAAAGCGAAAGAAGAGAGAGAAAAGGCAAGAAACCCAGAAGGAAAGGAGGAGGAAGAACAGAGAAATTTAAGGAAATTCATTGAGGAAGAAGAGGAGGAAGGTTTCGTGGTTGAAAAGATGCAGCCAGAACAAGCTCAACAACAGCAGCAATTAGTGGTGCAGAACAACCCAGGAAGCTTAAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAAGAGATTTCGAGGTCCGCTCTGTCCACTTTCCGAGCCAAAGAAGAGGAGATCGAGCGGAAGAAGATGGAGGTTAGAGAGAAGGTTCAAGTTCAGTTAGGCCGCGTCGAAGAAGAAACCAAACGCCTCGCTTGCATTCGTGAGGTAACGCCATAAACTTCCAAAAATCTTCTCAAGATTTTAGGGTTTTGCTTAGATTTTGGTTTCTGCTCTGTTTTATATGAAAAAGTTAGGGATAAAATTGCTGAAAATCTCTTGAAACTGACTAATTTTAGGGTTAATCTCTGCTTAAAAGCTCTGAGAACAGGGGGGTTTTAACCCCCTTTTTGCATGATTTAGTTTTGTTTTCTATGGTGTTTTGGATTAAATTAATGTTTTGTTAGGGATTAGAAGCAGCTTTATGTCAGATTTGTAAGTTTCTTTGAATTCTTTTCACTTGCATTCTTAACCTAGACACTTTATCAAGATAATGTTCTAATTTTTCATTTATTTCCCGTACTTTTGTCATCTGAAAGCGTTAGAACAAATTTGAGGCTCTGATCTGAATTTTAGCCTTTCCTTTTGGGGATTTTCTTCAAACCCTTTTCTGGGAAGGTCCATAGAACTTAGAGATTCTCATTTACGCATTCAAGGAGAAGATTATGCTGTGACCTACAAAATCAACGATGTTTGGTTGAAAGAGTCATTTAGAACTAACATTAGCTTAAGTGGATGAACATGTAGTAGAAGAAGATATGATAATGTGTTGGTATTGGATTGGGTTTTGTTGTTTGTTTTGGTTCATGAAACGAAATTTTCATGAACGCCAGGAACTCGAGGCGCTTGCCGATCCGATGAGGAAGGAAGTGGCACAGGTTCGTAAAAGGATCGACGCGGTGAACAAGGAATTAAAGCCTCTGGGACATACCTGTCAAAAGAAGGTAAGATTTGGGGGAAGGAATAGGTGTGTGGACAAGCATACAATATAAGAAGATGATGTTGCGGTCTGTGAATGTCAATTATTGTAGCTTACCATATAAAATAGGACCACTGAGCTGGTTTTTGTATTGTCTGTCATAGGAAAAAGAGTACAAGGAAGCCCTCGATGCCTTCAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACCAAATTAATGGAGGTAAGTTCCCCATGAATCCCTTTCATTTTCGATCTTCTGCGCATCATAAATCACCGAGAGGTAGGACAATAGGGACCTAGTTTTGCACGTTGGGGGGGCCATTCAATTAATTTCGAACCATGTCGACTGTTGGAGACTACTTGAATGAGGTAGTTAGCTAAAAAAACTGTTTATGTCTTTGTGTTTGTTGGGTGCGCAGCTGGTGAGTGAAAGCGAGCGGTTGAGGCTGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATACGATTCGGTAAATGAATTGATTGATTGATTGATTGATTGAAGCGAGGACGGATGACAAAGCGATAACCCCTGTTTATTAGGCTTTTGGTGTGTGATGTATTTAGTATAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTCGTTTGTGTATTTATTGAAATTTGGGTGTTGTCTGTGTTTGGGTGTTTTGTT

mRNA sequence

GGAGAGGGCAAGGCAAGCTGGGTTGGCACTTTCAAAAGGCTTTGTAGTTTTATAAGCGCTTGAAATACCCAGAGGAGAAAAAAGAATAGAAATACAGCACAAACCCCATCATTTCAAAAGCAAAAGCGAAAGAAGAGAGAGAAAAGGCAAGAAACCCAGAAGGAAAGGAGGAGGAAGAACAGAGAAATTTAAGGAAATTCATTGAGGAAGAAGAGGAGGAAGGTTTCGTGGTTGAAAAGATGCAGCCAGAACAAGCTCAACAACAGCAGCAATTAGTGGTGCAGAACAACCCAGGAAGCTTAAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAAGAGATTTCGAGGTCCGCTCTGTCCACTTTCCGAGCCAAAGAAGAGGAGATCGAGCGGAAGAAGATGGAGGTTAGAGAGAAGGTTCAAGTTCAGTTAGGCCGCGTCGAAGAAGAAACCAAACGCCTCGCTTGCATTCGTGAGGAACTCGAGGCGCTTGCCGATCCGATGAGGAAGGAAGTGGCACAGGTTCGTAAAAGGATCGACGCGGTGAACAAGGAATTAAAGCCTCTGGGACATACCTGTCAAAAGAAGGAAAAAGAGTACAAGGAAGCCCTCGATGCCTTCAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACCAAATTAATGGAGCTGGTGAGTGAAAGCGAGCGGTTGAGGCTGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATACGATTCGGTAAATGAATTGATTGATTGATTGATTGATTGAAGCGAGGACGGATGACAAAGCGATAACCCCTGTTTATTAGGCTTTTGGTGTGTGATGTATTTAGTATAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTCGTTTGTGTATTTATTGAAATTTGGGTGTTGTCTGTGTTTGGGTGTTTTGTT

Coding sequence (CDS)

ATGCAGCCAGAACAAGCTCAACAACAGCAGCAATTAGTGGTGCAGAACAACCCAGGAAGCTTAAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAAGAGATTTCGAGGTCCGCTCTGTCCACTTTCCGAGCCAAAGAAGAGGAGATCGAGCGGAAGAAGATGGAGGTTAGAGAGAAGGTTCAAGTTCAGTTAGGCCGCGTCGAAGAAGAAACCAAACGCCTCGCTTGCATTCGTGAGGAACTCGAGGCGCTTGCCGATCCGATGAGGAAGGAAGTGGCACAGGTTCGTAAAAGGATCGACGCGGTGAACAAGGAATTAAAGCCTCTGGGACATACCTGTCAAAAGAAGGAAAAAGAGTACAAGGAAGCCCTCGATGCCTTCAACGACAAGAACAAGGAAAAAGTTCAGCTCATCACCAAATTAATGGAGCTGGTGAGTGAAAGCGAGCGGTTGAGGCTGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATACGATTCGGTAA

Protein sequence

MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEYKEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR

Homology

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BLAST of CmaCh06G004560.1 vs. ExPASy Swiss-Prot
Match: B1H222 (RAB6-interacting golgin OS=Rattus norvegicus OX=10116 GN=Gorab PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04
Identity = 37/122 (30.33%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 43  RAKEEEIERKKMEVREKVQVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAV 102
           R  EE+ +RKK  + + +  +  R + ET +L  I++EL+AL D +  ++  +R RID  
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213

Query: 103 NKELKPLGHTCQKKEKEYKEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKN 162
           + E         + E EY  A      K + K QL   L  ++ ++E  + +KLEEL + 
Sbjct: 214 SLEYSYARKRFDRAEAEYVTAKLDLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQ 273

Query: 163 ID 165
           +D
Sbjct: 274 LD 275

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BLAST of CmaCh06G004560.1 vs. ExPASy TrEMBL
Match: A0A6J1KYK3 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111498737 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. ExPASy TrEMBL
Match: A0A6J1G0J9 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111449572 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. ExPASy TrEMBL
Match: A0A5D3DPH8 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003590 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.6e-75
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEAL+AFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALEAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. ExPASy TrEMBL
Match: A0A1S3B6L6 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103486581 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.6e-75
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEAL+AFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALEAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. ExPASy TrEMBL
Match: A0A0A0LGI7 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_3G751460 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.0e-75
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEAL+AFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALEAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. NCBI nr
Match: XP_022945279.1 (uncharacterized protein LOC111449572 [Cucurbita moschata] >XP_023005860.1 uncharacterized protein LOC111498737 [Cucurbita maxima] >XP_023539891.1 uncharacterized protein LOC111800435 [Cucurbita pepo subsp. pepo] >KAG6596553.1 hypothetical protein SDJN03_09733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028089.1 hypothetical protein SDJN02_09269 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 4.7e-77
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. NCBI nr
Match: XP_008442808.1 (PREDICTED: uncharacterized protein LOC103486581 [Cucumis melo] >KAA0043908.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa] >TYK25229.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 7.4e-75
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEAL+AFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALEAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. NCBI nr
Match: XP_004137876.1 (GRB10-interacting GYF protein 2 [Cucumis sativus] >KGN59071.1 hypothetical protein Csa_000951 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQPEQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQPEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEAL+AFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALEAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. NCBI nr
Match: XP_038903091.1 (GRB10-interacting GYF protein 2-like [Benincasa hispida])

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-73
Identity = 161/167 (96.41%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ EQAQQQQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQTEQAQQQQQLMVQNNTGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           Q QLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QAQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           KEAL+AFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KEALEAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 167

[Close]

BLAST of CmaCh06G004560.1 vs. NCBI nr
Match: XP_022144720.1 (uncharacterized protein LOC111014340 [Momordica charantia])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MQPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60
           MQ E  Q QQQL+VQNN GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV
Sbjct: 1   MQTE--QPQQQLMVQNNQGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKV 60

Query: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEY 120
           QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRK+IDAVNKELKPLGHTCQKKEKEY
Sbjct: 61  QVQLGRVEEETKRLACIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEY 120

Query: 121 KEALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 168
           K+ALDAFN+KNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR
Sbjct: 121 KDALDAFNEKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTIR 165

[Close]

BLAST of CmaCh06G004560.1 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59
Identity = 122/148 (82.43%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 19  GSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQVQLGRVEEETKRLACIR 78
           GS+SFSS +SKEDEE+SR+ALS FRAKEEEIE+KKME+RE+VQ QLGRVEEETKRLA IR
Sbjct: 30  GSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIR 89

Query: 79  EELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEYKEALDAFNDKNKEKVQLI 138
           EELE LADPMRKEVA VRK+ID+VNKELKPLGHT QKKE+EYKEAL+AFN+KN+EKVQLI
Sbjct: 90  EELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLI 149

Query: 139 TKLMELVSESERLRLKKLEELSKNIDTI 167
           T+LMELV ESE++R+KKLEELSKNID+I
Sbjct: 150 TRLMELVGESEKMRMKKLEELSKNIDSI 177

[Close]

BLAST of CmaCh06G004560.1 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-57
Identity = 119/165 (72.12%), Postives = 149/165 (90.30%), Query Frame = 0


Query: 2   QPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ 61
           QP+  QQ  ++V+  + GSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++Q
Sbjct: 30  QPQPQQQSNEMVL--HTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQ 89

Query: 62  VQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEYK 121
            QLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRK+ID+VNKELKPLG T QKKE+EYK
Sbjct: 90  AQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYK 149

Query: 122 EALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTI 167
           EALD FN+KN+EKVQLITKLMELV ESE+LR+ KLEELSK+I+T+
Sbjct: 150 EALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSKSIETV 192

[Close]

BLAST of CmaCh06G004560.1 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-55
Identity = 118/165 (71.52%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 2   QPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ 61
           QP+  QQ  ++V+  + GSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++Q
Sbjct: 30  QPQPQQQSNEMVL--HTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQ 89

Query: 62  VQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEYK 121
            QLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRK+ID+VNKELKPLG T QKK  EYK
Sbjct: 90  AQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKVMEYK 149

Query: 122 EALDAFNDKNKEKVQLITKLMELVSESERLRLKKLEELSKNIDTI 167
           EALD FN+KN+EKVQLITKLMELV ESE+LR+ KLEELSK+I+T+
Sbjct: 150 EALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSKSIETV 192

[Close]

BLAST of CmaCh06G004560.1 vs. TAIR 10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-55
Identity = 119/168 (70.83%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 2   QPEQAQQQQQLVVQNNPGSLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQ 61
           QP+  QQ  ++V+  + GSLSFSSH+S+EDEE++RSALS FRAKE+EIE+++MEVRE++Q
Sbjct: 30  QPQPQQQSNEMVL--HTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQ 89

Query: 62  VQLGRVEEETKRLACIREELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEYK 121
            QLGRVE+ETKRL+ IREELE++ADPMRKEV+ VRK+ID+VNKELKPLG T QKKE+EYK
Sbjct: 90  AQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYK 149

Query: 122 EALDAFNDKNKEKVQLITKLME---LVSESERLRLKKLEELSKNIDTI 167
           EALD FN+KN+EKVQLITKLME   LV ESE+LR+ KLEELSK+I+T+
Sbjct: 150 EALDTFNEKNREKVQLITKLMEMEQLVGESEKLRMIKLEELSKSIETV 195

[Close]

BLAST of CmaCh06G004560.1 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 211.5 bits (537), Expect = 5.3e-55
Identity = 116/146 (79.45%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 20  SLSFSSHLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQVQLGRVEEETKRLACIRE 79
           SLSFSS +SKEDEE++RSALS FRAKE+EIE++KMEVRE+V+ QLGRVEEET+RLA IRE
Sbjct: 17  SLSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIRE 76

Query: 80  ELEALADPMRKEVAQVRKRIDAVNKELKPLGHTCQKKEKEYKEALDAFNDKNKEKVQLIT 139
           ELE +ADPMRKEV  VRK+ID+VNKELKPLG T QKKE+EYKEALD FN+KN+EKVQLIT
Sbjct: 77  ELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLIT 136

Query: 140 KLMELVSESERLRLKKLEELSKNIDT 166
           KLMELV ESE+LRLKKL+ELS++IDT
Sbjct: 137 KLMELVGESEKLRLKKLDELSRSIDT 162

The following BLAST results are available for this feature:

BLAST of CmaCh06G004560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1H222	9.3e-04	30.33	RAB6-interacting golgin OS=Rattus norvegicus OX=10116 GN=Gorab PE=2 SV=2	[more]

BLAST of CmaCh06G004560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYK3	2.3e-77	100.00	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111498737 PE=3 SV=1	[more]
A0A6J1G0J9	2.3e-77	100.00	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111449572 PE=3 SV=1	[more]
A0A5D3DPH8	3.6e-75	97.60	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6L6	3.6e-75	97.60	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103486581 PE=3 SV=1	[more]
A0A0A0LGI7	8.0e-75	97.01	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_3G751460 PE=3 SV=1	[more]

BLAST of CmaCh06G004560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945279.1	4.7e-77	100.00	uncharacterized protein LOC111449572 [Cucurbita moschata] >XP_023005860.1 unchar...	[more]
XP_008442808.1	7.4e-75	97.60	PREDICTED: uncharacterized protein LOC103486581 [Cucumis melo] >KAA0043908.1 put...	[more]
XP_004137876.1	1.7e-74	97.01	GRB10-interacting GYF protein 2 [Cucumis sativus] >KGN59071.1 hypothetical prote...	[more]
XP_038903091.1	1.4e-73	96.41	GRB10-interacting GYF protein 2-like [Benincasa hispida]	[more]
XP_022144720.1	1.1e-70	94.61	uncharacterized protein LOC111014340 [Momordica charantia]	[more]

BLAST of CmaCh06G004560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	1.6e-59	82.43	Family of unknown function (DUF662)	[more]
AT2G36410.2	7.5e-57	72.12	Family of unknown function (DUF662)	[more]
AT2G36410.3	1.1e-55	71.52	Family of unknown function (DUF662)	[more]
AT2G36410.1	3.1e-55	70.83	Family of unknown function (DUF662)	[more]
AT3G52920.2	5.3e-55	79.45	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21470:SF8	EXPRESSED PROTEIN	coord: 18..166
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 20..165 e-value: 2.9E-75 score: 251.3
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 18..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G004560	CmaCh06G004560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004560.1:exon:1977	CmaCh06G004560.1:exon:1977	exon
CmaCh06G004560.1:exon:1976	CmaCh06G004560.1:exon:1976	exon
CmaCh06G004560.1:exon:1975	CmaCh06G004560.1:exon:1975	exon
CmaCh06G004560.1:exon:1974	CmaCh06G004560.1:exon:1974	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004560.1:three_prime_utr	CmaCh06G004560.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004560.1:cds	CmaCh06G004560.1:cds_4	CDS
CmaCh06G004560.1:cds	CmaCh06G004560.1:cds_3	CDS
CmaCh06G004560.1:cds	CmaCh06G004560.1:cds_2	CDS
CmaCh06G004560.1:cds	CmaCh06G004560.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004560.1:five_prime_utr	CmaCh06G004560.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004560.1	CmaCh06G004560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus