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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAACACTCTAGTCGCCGAGATCTTCGTCATCTGCTTGTCTGGTGCTTCTCTTCTCTTCTTCCTGAGGACACAACTTTCATCTGCTTCCCATGTTCATGGATTGTCTGCATTTTACAAGGTGTGTTAAGTTATTCTTGTCTGCTTATTGTGTCTTTAACTTGGTTAACCTGCACTTAATTTTCTAGATTTAGAAATTCTTGTAACAATGGGAATAAATAATCTCTCCTTTATCATCATCTCTTTTTCTCTCCATTTTTTTTTTGTTTCCTTTATTGGTCTTAGTTTTGATAAAATTAATAGAATTGAGCAGCTGGTGACATGAACTTGACTTTGAGTCTCCGAGGCTATAATGGTAGAAAAGTGTTTCTTAGGCAAAGGAACTGCAGAGTGAAGTTGGGTATCACTTGAATGCGGGGTATTCAATAGGAATGCCTTCGAGCATATTTCCACTAAGAAAATAAGAGAGTACTTTACTGAGCGGGAATGCGGAGTACTCGATGTGCAATTTCACAACGCCTGGCCTCCCATATGGCTGTATCTCATCAAAGAATGA mRNA sequence ATGAACACTCTAGTCGCCGAGATCTTCGTCATCTGCTTGTCTGGTGCTTCTCTTCTCTTCTTCCTGAGGACACAACTTTCATCTGCTTCCCATGTTCATGGATTGTCTGCATTTTACAAGGCAAAGGAACTGCAGAGTGAAGTTGGGTATCACTTGAATGCGGGGAATGCCTTCGAGCATATTTCCACTAAGAAAATAAGAGAGTACTTTACTGAGCGGGAATGCGGAGTACTCGATGTGCAATTTCACAACGCCTGGCCTCCCATATGGCTGTATCTCATCAAAGAATGA Coding sequence (CDS) ATGAACACTCTAGTCGCCGAGATCTTCGTCATCTGCTTGTCTGGTGCTTCTCTTCTCTTCTTCCTGAGGACACAACTTTCATCTGCTTCCCATGTTCATGGATTGTCTGCATTTTACAAGGCAAAGGAACTGCAGAGTGAAGTTGGGTATCACTTGAATGCGGGGAATGCCTTCGAGCATATTTCCACTAAGAAAATAAGAGAGTACTTTACTGAGCGGGAATGCGGAGTACTCGATGTGCAATTTCACAACGCCTGGCCTCCCATATGGCTGTATCTCATCAAAGAATGA Protein sequence MNTLVAEIFVICLSGASLLFFLRTQLSSASHVHGLSAFYKAKELQSEVGYHLNAGNAFEHISTKKIREYFTERECGVLDVQFHNAWPPIWLYLIKE
Homology
BLAST of CmaCh06G004410.1 vs. NCBI nr
Match: KAG6596539.1 (hypothetical protein SDJN03_09719, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11 Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 0
Query: 1 MNTLVAEIFVICLSGASLLFFLRTQLSSASHVHGLSAFYKAKELQSEVGYHLNAGNAFEH 60
MNTLVAEIFV+ LSGASLLFFLRTQLSSASHVHGLSAFYKAK ++ + G+
Sbjct: 1 MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYKAKRWKA---LKIPLGSRLTE 60
Query: 61 ISTKKIREYFTERECGVLDVQFHNAWPPI 90
T I + + + H WP +
Sbjct: 61 ALTDGIAPF--ANAVSLFACRMHQIWPTL 84
BLAST of CmaCh06G004410.1 vs. NCBI nr
Match: KAG7028072.1 (hypothetical protein SDJN02_09252, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query: 1 MNTLVAEIFVICLSGASLLFFLRTQLSSASHVHGLSAFYK 41
MNTLVAEIFV+ LSGASLLFFLRTQLSSASHVHGLSAFYK
Sbjct: 1 MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYK 40
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6596539.1 | 4.4e-11 | 51.69 | hypothetical protein SDJN03_09719, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7028072.1 | 1.8e-09 | 95.00 | hypothetical protein SDJN02_09252, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G004410.1:exon:3093 | CmaCh06G004410.1:exon:3093 | exon |
| CmaCh06G004410.1:exon:3092 | CmaCh06G004410.1:exon:3092 | exon |
| CmaCh06G004410.1:exon:3091 | CmaCh06G004410.1:exon:3091 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G004410.1:cds | CmaCh06G004410.1:cds | CDS |
| CmaCh06G004410.1:cds | CmaCh06G004410.1:cds_2 | CDS |
| CmaCh06G004410.1:cds | CmaCh06G004410.1:cds_3 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmaCh06G004410.1 | CmaCh06G004410.1-protein | polypeptide |
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