CmaCh06G004230.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004230.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	dnaJ homolog subfamily C member 28-like
Location	Cma_Chr06: 1951400 .. 1953810 (-)
Sequence length	1297
RNA-Seq Expression	CmaCh06G004230.1
Synteny	CmaCh06G004230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTGTTCTTTGAAAATACGTGGCATGGTATTAAGAGGCGACGTGGAAAAACTTCAACCGCAGTTGTGGCCACGTAGCTGGCCAATCTCTGACAAATTCCATTTGGGGAAAGCTTTCCGACCCTCCCTTGCTCGATTCTCCGTCATGGCGACCCGCCTTCCGAGGACGAAGCTATTCTGGTCCCCAACATCCAGATCATCGGCCGACGATTACTCGCAGATGGCCGTTCTCATCAGATCTAGGCGAAGGTGGGCGTCATCGTCGTCGTCGTCGTCGTCTTCTTCGTCTTCTCCGCCTAGCAAGTCACAGAAAACGGAGAAGAAATTCGTGGACCGTCTTTCATCGGTGATAGACGCCGTCAATGACCGGAAACTTCCTCCGGAGCTTCGAGGTCAGCGTAACTCTGTCAGGTCCTCCTCGCTTTACTCCATTTCACTTACCTGCATATCTGGTTTGAGCTCTCAGATTAATTCCTCCTTAATCGGTTTTCCTGATGTGATCTTAATGCTTAGTTTTCGTTGAGAATTAGCTAATTTCTGAAACAGAGTTTCTATTCTATTACAAATTGCTCGTGTTTTTATTACTTCTGCATTCCTCATTCTATGTGAAGATTATTATAGCAAGAGGATAAACGCTTTTTTCTGGAGATTTTGATCCCTTTCATGTAATTCACTGTCACACACTGCCATTCGAATGTTTGAAACTTTATAGGTATCAAATTGTCTACCAAAATTCAGCAAGTAATTAGCAATGCTTCCATCTCTGTCAAAAAGAAAAGAGGAAAAAAAAAACCTTAGATGTCCATTTTGCAATTAGTATAGCCACGAATTACAGACCTAATCCTATTATGCTTTGGCCTATATGCCATCATTTCTGTGTAAATCTATGGTTCTTCTTTACCTTCTTTAACATTTTATTTAAATTATTGTCATCTTCAACTAGACGAACTTTTTGTTTAATTTTGGTTATGTTCATCCTCACTGAGATAAGCCTTTTACTTTTCACTTTATTATAGATCTCTGCTTTTCACCTACTGTTTTTTTGACTTAGCTAGAATATTTTGGATAGGTCAGAAACTGATCTGATGAATCTTGTTGAGAGGAGGATTTGGAATTCCATGGAAGAAGGGCAATTCGAGAACTTACCAGGAAAAGGGAAACCTCTCAATCTCTCTACTAATCCCCATGCTGATCCAGCAGAAGACACACTGTACCGAATCTTGTCGAAAAATGGATGTGCACCAGAATGGGTTGAGCTCAACAAAGAGATTAGGAGCAATATATCTGTGTGGCGATCATCGTTGAAGGAAGCATTTGAAAGTAGAGGCAATGAAGATCTTTCAAAATGGACTGAGAGTTCAGAGGCTTTGAAAGTGCAATTGCAACACATCAATGACAAGGTCAGTTATCAGTTTTCTGATTCTTAATAATGGAAAGTTGGGTTCTAAATTCTAATTCAGTATCAGGTTCTTCGTTTCTCCCCGGAAGTTGGTCAATTCAACAATTCCTTAAACCTCCCAACTTCAACTGGGCGGCTGGGAAGCAACTAGCAAGTTAATGGTTGCTTGTTGGGATTGAAGGTGGTTCTAGTGTGGGGAAGTGTCTTTTTCATATAAATGCATATAAAAGATCATGGCTTATGCTTCTAAACATCTAACCTCTTAGTTGAAGATATATATCCTAACCACAAGTGGGGTCGGGAGATTAAACATCTAACCTCCTCTTAGTTGACTATATCATGTCATAACCAGTTAATCTAACCGTTTAGTTAATTTGTGCTCTAACTGATCTTAACATTCTATTCCACGACCATTCTGCAAAGGTGTAGTAAACATAGTTTCAGTTTCCATTTGCAGGTTTTTCGGTATAACTTAATAGTTCCTTTTGGCCGCCAGATGTCTGGATTGAAATGGGAGAAAGAACTGGATCGTCTTGTAGAATGAGACAACCTGTTTCTCCTCTTTGCAATTCCACCGCCCCAGTTTTGCTTTCCAGGTCAGAACCATTGAACCAGCATTCATGTCTCTACAGACAGAAAAACTGTTCTAGCCGTCACATAAAAGAGGAAAGAAAGCTCTTTTGGCATATAAAAATGACTGTCAGTCGTCTTGTATCAAATCCGTATATCTGCAGTGCTTATCTAGCTTATACTGTTTAAAAATGTTTACATAGAATTGTGGGTTTTGAGTCATACCCATTTTTCACTTTATGATTTTTAATTAGGTTACATTCACAATATAAAAGAAATAGTAAAATGTACTGTTCTAACTTTTGATAAGGATTCTTATGAATACCTATCATTAATACAACATTTTACAGTTTAATTAGCATAATATATGATGGATGAAACTATATAATAATGTAAAAATATAAGGACCAAAATAGAAAAATCATAAAAATATATGAACC

mRNA sequence

ATGACGTGTTCTTTGAAAATACGTGGCATGGTATTAAGAGGCGACGTGGAAAAACTTCAACCGCAGTTGTGGCCACGTAGCTGGCCAATCTCTGACAAATTCCATTTGGGGAAAGCTTTCCGACCCTCCCTTGCTCGATTCTCCGTCATGGCGACCCGCCTTCCGAGGACGAAGCTATTCTGGTCCCCAACATCCAGATCATCGGCCGACGATTACTCGCAGATGGCCGTTCTCATCAGATCTAGGCGAAGGTGGGCGTCATCGTCGTCGTCGTCGTCGTCTTCTTCGTCTTCTCCGCCTAGCAAGTCACAGAAAACGGAGAAGAAATTCGTGGACCGTCTTTCATCGGTGATAGACGCCGTCAATGACCGGAAACTTCCTCCGGAGCTTCGAGGTCAGCGTAACTCTGTCAGGTCAGAAACTGATCTGATGAATCTTGTTGAGAGGAGGATTTGGAATTCCATGGAAGAAGGGCAATTCGAGAACTTACCAGGAAAAGGGAAACCTCTCAATCTCTCTACTAATCCCCATGCTGATCCAGCAGAAGACACACTGTACCGAATCTTGTCGAAAAATGGATGTGCACCAGAATGGGTTGAGCTCAACAAAGAGATTAGGAGCAATATATCTGTGTGGCGATCATCGTTGAAGGAAGCATTTGAAAGTAGAGGCAATGAAGATCTTTCAAAATGGACTGAGAGTTCAGAGGCTTTGAAAGTGCAATTGCAACACATCAATGACAAGGTTTTTCGGTATAACTTAATAGTTCCTTTTGGCCGCCAGATGTCTGGATTGAAATGGGAGAAAGAACTGGATCGTCTTGTAGAATGAGACAACCTGTTTCTCCTCTTTGCAATTCCACCGCCCCAGTTTTGCTTTCCAGGTCAGAACCATTGAACCAGCATTCATGTCTCTACAGACAGAAAAACTGTTCTAGCCGTCACATAAAAGAGGAAAGAAAGCTCTTTTGGCATATAAAAATGACTGTCAGTCGTCTTGTATCAAATCCGTATATCTGCAGTGCTTATCTAGCTTATACTGTTTAAAAATGTTTACATAGAATTGTGGGTTTTGAGTCATACCCATTTTTCACTTTATGATTTTTAATTAGGTTACATTCACAATATAAAAGAAATAGTAAAATGTACTGTTCTAACTTTTGATAAGGATTCTTATGAATACCTATCATTAATACAACATTTTACAGTTTAATTAGCATAATATATGATGGATGAAACTATATAATAATGTAAAAATATAAGGACCAAAATAGAAAAATCATAAAAATATATGAACC

Coding sequence (CDS)

ATGACGTGTTCTTTGAAAATACGTGGCATGGTATTAAGAGGCGACGTGGAAAAACTTCAACCGCAGTTGTGGCCACGTAGCTGGCCAATCTCTGACAAATTCCATTTGGGGAAAGCTTTCCGACCCTCCCTTGCTCGATTCTCCGTCATGGCGACCCGCCTTCCGAGGACGAAGCTATTCTGGTCCCCAACATCCAGATCATCGGCCGACGATTACTCGCAGATGGCCGTTCTCATCAGATCTAGGCGAAGGTGGGCGTCATCGTCGTCGTCGTCGTCGTCTTCTTCGTCTTCTCCGCCTAGCAAGTCACAGAAAACGGAGAAGAAATTCGTGGACCGTCTTTCATCGGTGATAGACGCCGTCAATGACCGGAAACTTCCTCCGGAGCTTCGAGGTCAGCGTAACTCTGTCAGGTCAGAAACTGATCTGATGAATCTTGTTGAGAGGAGGATTTGGAATTCCATGGAAGAAGGGCAATTCGAGAACTTACCAGGAAAAGGGAAACCTCTCAATCTCTCTACTAATCCCCATGCTGATCCAGCAGAAGACACACTGTACCGAATCTTGTCGAAAAATGGATGTGCACCAGAATGGGTTGAGCTCAACAAAGAGATTAGGAGCAATATATCTGTGTGGCGATCATCGTTGAAGGAAGCATTTGAAAGTAGAGGCAATGAAGATCTTTCAAAATGGACTGAGAGTTCAGAGGCTTTGAAAGTGCAATTGCAACACATCAATGACAAGGTTTTTCGGTATAACTTAATAGTTCCTTTTGGCCGCCAGATGTCTGGATTGAAATGGGAGAAAGAACTGGATCGTCTTGTAGAATGA

Protein sequence

MTCSLKIRGMVLRGDVEKLQPQLWPRSWPISDKFHLGKAFRPSLARFSVMATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE

Homology

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy Swiss-Prot
Match: Q8VCE1 (DnaJ homolog subfamily C member 28 OS=Mus musculus OX=10090 GN=Dnajc28 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 7.4e-14
Identity = 60/193 (31.09%), Postives = 93/193 (48.19%), Query Frame = 0


Query: 100 PSKSQKTEKKF-VDRLSSVIDAVNDRKLPPELRGQRNSVRSETD---------LMNLVER 159
           PS+ +K  ++F  DR +  +     +KL  E      +V+             +  LVE 
Sbjct: 147 PSQREKQYRQFRADRATEQVMEYQRQKLQREFFANSITVKDVRQSKQQKITQAIERLVED 206

Query: 160 RIWNSMEEGQFENLPGKGKPL-NLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN 219
            I  SM +G F+NL GKGKPL   S   + DP    L RIL  NG  PEW+ + KEI+  
Sbjct: 207 LIQESMAKGDFDNLSGKGKPLKKFSGCSYIDPMTHNLNRILIDNGYQPEWILMQKEIKDT 266

Query: 220 ISVWRSSLKEAFESRGN----EDLSKWTESSEALKVQLQHINDKVFRYNLIVP-FGRQMS 277
           I   R +L  + +  GN     +  +W +  E  + +++ +N ++  +NLIVP   RQ  
Sbjct: 267 IEQLREALLMSRKKLGNPLSPTEQKQWAQVCEQFQEKIRKLNKRINDFNLIVPILTRQKV 326

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy Swiss-Prot
Match: Q9NX36 (DnaJ homolog subfamily C member 28 OS=Homo sapiens OX=9606 GN=DNAJC28 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-12
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 146 LVERRIWNSMEEGQFENLPGKGKPL-NLSTNPHADPAEDTLYRILSKNGCAPEWVELNKE 205
           LVE  I  SM +G F+NL GKGKPL   S   + DP    L RIL  NG  PEW+   KE
Sbjct: 203 LVEDLIQESMAKGDFDNLSGKGKPLKKFSDCSYIDPMTHNLNRILIDNGYQPEWILKQKE 262

Query: 206 IRSNISVWRSSLKEAFESRGN----EDLSKWTESSEALKVQLQHINDKVFRYNLIVP-FG 265
           I   I   R ++  + +  GN     +  +W    E  +  ++ +N ++  +NLIVP   
Sbjct: 263 ISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPILT 322

Query: 266 RQMSGLKWEKELDR 274
           RQ      +KE+ R
Sbjct: 323 RQKVHFDAQKEIVR 336

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy Swiss-Prot
Match: P36677 (Uncharacterized protein YhdN OS=Escherichia coli (strain K12) OX=83333 GN=yhdN PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.1e-04
Identity = 22/57 (38.60%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 148 ERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKE 205
           ER I  +  +G+F+NL G G+PL L  + H  P     YR+L   GC P  +E  +E
Sbjct: 9   ERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRRE 65

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy TrEMBL
Match: A0A6J1FNC7 (dnaJ homolog subfamily C member 28-like OS=Cucurbita moschata OX=3662 GN=LOC111446735 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 258/268 (96.27%), Postives = 261/268 (97.39%), Query Frame = 0


Query: 10  MVLRGDVEKLQPQLWPRSWPISDKFHLGKAFRPSLARFSVMATRLPRTKLFWSPTSRSSA 69
           MVLRGDVEKLQP LWPRSWPISDKFHLGKAFRP LARFS MATRLPRTKLFWS TSRSSA
Sbjct: 1   MVLRGDVEKLQPLLWPRSWPISDKFHLGKAFRPPLARFSAMATRLPRTKLFWSLTSRSSA 60

Query: 70  DDYSQMAVLIRSRRRWA-SSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP 129
           DDYS MAVLIRSRRRWA SSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP
Sbjct: 61  DDYSPMAVLIRSRRRWASSSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP 120

Query: 130 ELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI 189
           E RGQRNSVRSETDL+N+VERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI
Sbjct: 121 EFRGQRNSVRSETDLINVVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI 180

Query: 190 LSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDK 249
           LSKNGCAPEWVELNKEIRSNISVWRSSLK+AFESRGNEDLSKWTESSEALKVQLQHINDK
Sbjct: 181 LSKNGCAPEWVELNKEIRSNISVWRSSLKKAFESRGNEDLSKWTESSEALKVQLQHINDK 240

Query: 250 VFRYNLIVPFGRQMSGLKWEKELDRLVE 277
           VFRYNLIVPFGRQMSGLKWEKELDRLVE
Sbjct: 241 VFRYNLIVPFGRQMSGLKWEKELDRLVE 268

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy TrEMBL
Match: A0A6J1KSG4 (dnaJ homolog subfamily C member 28-like OS=Cucurbita maxima OX=3661 GN=LOC111498294 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.2e-121
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 50  MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK 109
           MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK
Sbjct: 1   MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK 60

Query: 110 FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP 169
           FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP
Sbjct: 61  FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP 120

Query: 170 LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS 229
           LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS
Sbjct: 121 LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS 180

Query: 230 KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 277
           KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE
Sbjct: 181 KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 227

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy TrEMBL
Match: A0A6J1CS21 (uncharacterized protein LOC111014234 OS=Momordica charantia OX=3673 GN=LOC111014234 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.3e-103
Identity = 201/248 (81.05%), Postives = 214/248 (86.29%), Query Frame = 0


Query: 29  PISDKFHLGKAFRPSLARFSVMATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASS 88
           P S +   GK  R +  R S MA RLPRTK FW    RS ADD S + V    RRR++SS
Sbjct: 86  PFSPELQSGKILRRARTRISAMAARLPRTKPFWYLIPRSPADDXSLVFVPTGFRRRFSSS 145

Query: 89  SSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVE 148
           SSSSSSSSSS P+KSQKTEKK VDRLSSVID+VNDRKLPPELRGQRN+VRSETDL+N+VE
Sbjct: 146 SSSSSSSSSSSPNKSQKTEKKLVDRLSSVIDSVNDRKLPPELRGQRNAVRSETDLINVVE 205

Query: 149 RRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN 208
           RRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN
Sbjct: 206 RRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN 265

Query: 209 ISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWE 268
           ISVWRSSL  AFES+ N D SKW+ES+EALKVQLQHINDKVFRYNLIVPFGRQM GLKWE
Sbjct: 266 ISVWRSSLNRAFESKRNGDHSKWSESTEALKVQLQHINDKVFRYNLIVPFGRQMFGLKWE 325

Query: 269 KELDRLVE 277
           KELDRLVE
Sbjct: 326 KELDRLVE 333

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy TrEMBL
Match: A0A0A0LGF4 (DUF1992 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G746580 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.1e-100
Identity = 203/266 (76.32%), Postives = 215/266 (80.83%), Query Frame = 0


Query: 13  RGDVEKLQPQLWPRSWPISDKFHLGKA--FRPSLARFSVMATRLPRTKLFWSPTSRSSAD 72
           RG       +LWP    IS KF + +    RP  ARFS MATRLP TK F   TSR   D
Sbjct: 16  RGRAPNSNCRLWP---IISAKFLIWETPPPRPPSARFSAMATRLPTTKPFSFLTSRLFPD 75

Query: 73  DYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPPEL 132
           + S  A LI S RRWA      SS+++SPP KSQKTEKK VDRLSSVIDAVNDRKLPPEL
Sbjct: 76  ENSLAAALIGSSRRWA------SSTTASPPGKSQKTEKKLVDRLSSVIDAVNDRKLPPEL 135

Query: 133 RGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILS 192
           RGQRNSVRSETDL+N+VERRIWNSMEEGQFENLPGKGKPLNLS NPHADPAEDTLYRILS
Sbjct: 136 RGQRNSVRSETDLINVVERRIWNSMEEGQFENLPGKGKPLNLSINPHADPAEDTLYRILS 195

Query: 193 KNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDKVF 252
           KNGCAPEWVELNKEIRSNIS WRSSLK+AFESRGN D S WTES E L+VQLQHINDKVF
Sbjct: 196 KNGCAPEWVELNKEIRSNISEWRSSLKKAFESRGNGDHSIWTESKEGLQVQLQHINDKVF 255

Query: 253 RYNLIVPFGRQMSGLKWEKELDRLVE 277
           RYNLIVPFGRQM GLKWEKE+DRLVE
Sbjct: 256 RYNLIVPFGRQMFGLKWEKEMDRLVE 272

[Close]

BLAST of CmaCh06G004230.1 vs. ExPASy TrEMBL
Match: A0A1S3B761 (dnaJ homolog subfamily C member 28 OS=Cucumis melo OX=3656 GN=LOC103486543 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 8.0e-96
Identity = 188/227 (82.82%), Postives = 199/227 (87.67%), Query Frame = 0


Query: 50  MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK 109
           MATRLP TK F   TSRS  DD S +A    S RRWA   SSSSSS++SPP KSQKTEK 
Sbjct: 1   MATRLPTTKPFSFLTSRSFPDDNSLVAAFSGSSRRWA---SSSSSSTTSPPGKSQKTEKN 60

Query: 110 FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP 169
            VDRLSSVIDAVNDRKLPPELRGQRNSVRSETDL+N+VERRIWNSMEEGQFENLPGKGKP
Sbjct: 61  LVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLINVVERRIWNSMEEGQFENLPGKGKP 120

Query: 170 LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS 229
           LNLS NPHADPAEDTLYRILSKNGCAPEW+ELNKEIRSNIS WRSSLK+AFESRGN D S
Sbjct: 121 LNLSINPHADPAEDTLYRILSKNGCAPEWIELNKEIRSNISEWRSSLKKAFESRGNGDHS 180

Query: 230 KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 277
            WTES +AL+ QLQHIN+KVFRYNLIVPFGRQM GLKWEKE+DRLVE
Sbjct: 181 IWTESKKALQAQLQHINNKVFRYNLIVPFGRQMFGLKWEKEMDRLVE 224

[Close]

BLAST of CmaCh06G004230.1 vs. NCBI nr
Match: XP_022941444.1 (dnaJ homolog subfamily C member 28-like [Cucurbita moschata])

HSP 1 Score: 505.8 bits (1301), Expect = 2.4e-139
Identity = 258/268 (96.27%), Postives = 261/268 (97.39%), Query Frame = 0


Query: 10  MVLRGDVEKLQPQLWPRSWPISDKFHLGKAFRPSLARFSVMATRLPRTKLFWSPTSRSSA 69
           MVLRGDVEKLQP LWPRSWPISDKFHLGKAFRP LARFS MATRLPRTKLFWS TSRSSA
Sbjct: 1   MVLRGDVEKLQPLLWPRSWPISDKFHLGKAFRPPLARFSAMATRLPRTKLFWSLTSRSSA 60

Query: 70  DDYSQMAVLIRSRRRWA-SSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP 129
           DDYS MAVLIRSRRRWA SSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP
Sbjct: 61  DDYSPMAVLIRSRRRWASSSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP 120

Query: 130 ELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI 189
           E RGQRNSVRSETDL+N+VERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI
Sbjct: 121 EFRGQRNSVRSETDLINVVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI 180

Query: 190 LSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDK 249
           LSKNGCAPEWVELNKEIRSNISVWRSSLK+AFESRGNEDLSKWTESSEALKVQLQHINDK
Sbjct: 181 LSKNGCAPEWVELNKEIRSNISVWRSSLKKAFESRGNEDLSKWTESSEALKVQLQHINDK 240

Query: 250 VFRYNLIVPFGRQMSGLKWEKELDRLVE 277
           VFRYNLIVPFGRQMSGLKWEKELDRLVE
Sbjct: 241 VFRYNLIVPFGRQMSGLKWEKELDRLVE 268

[Close]

BLAST of CmaCh06G004230.1 vs. NCBI nr
Match: KAG6596520.1 (DnaJ-like subfamily C member 28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 504.6 bits (1298), Expect = 5.4e-139
Identity = 258/268 (96.27%), Postives = 261/268 (97.39%), Query Frame = 0


Query: 10  MVLRGDVEKLQPQLWPRSWPISDKFHLGKAFRPSLARFSVMATRLPRTKLFWSPTSRSSA 69
           MV RGDVEKLQP LWPRSWPISDKFHLGKAFRPSLARFS MATRLPRTKLFWS TSRSSA
Sbjct: 1   MVSRGDVEKLQPLLWPRSWPISDKFHLGKAFRPSLARFSAMATRLPRTKLFWSLTSRSSA 60

Query: 70  DDYSQMAVLIRSRRRWA-SSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP 129
           DDYS MAVLIRSRRRWA SSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP
Sbjct: 61  DDYSPMAVLIRSRRRWASSSSSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPP 120

Query: 130 ELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI 189
           ELRGQRNSVRSETDL+N+VERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI
Sbjct: 121 ELRGQRNSVRSETDLINVVERRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRI 180

Query: 190 LSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDK 249
           LSKNGCAPEWVELNKEI SNISVWRSSLK+AFESRGNEDLSKWTESSEALKVQLQHINDK
Sbjct: 181 LSKNGCAPEWVELNKEISSNISVWRSSLKKAFESRGNEDLSKWTESSEALKVQLQHINDK 240

Query: 250 VFRYNLIVPFGRQMSGLKWEKELDRLVE 277
           VFRYNLIVPFGRQMSGLKWEKELDRLVE
Sbjct: 241 VFRYNLIVPFGRQMSGLKWEKELDRLVE 268

[Close]

BLAST of CmaCh06G004230.1 vs. NCBI nr
Match: XP_023005192.1 (dnaJ homolog subfamily C member 28-like [Cucurbita maxima])

HSP 1 Score: 444.1 bits (1141), Expect = 8.7e-121
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 50  MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK 109
           MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK
Sbjct: 1   MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASSSSSSSSSSSSPPSKSQKTEKK 60

Query: 110 FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP 169
           FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP
Sbjct: 61  FVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGKP 120

Query: 170 LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS 229
           LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS
Sbjct: 121 LNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDLS 180

Query: 230 KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 277
           KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE
Sbjct: 181 KWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 227

[Close]

BLAST of CmaCh06G004230.1 vs. NCBI nr
Match: XP_023540908.1 (dnaJ homolog subfamily C member 28 [Cucurbita pepo subsp. pepo] >KAG7028056.1 DnaJ-like subfamily C member 28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429.1 bits (1102), Expect = 2.9e-116
Identity = 222/228 (97.37%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 50  MATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWA-SSSSSSSSSSSSPPSKSQKTEK 109
           MATRLPRTKLFWS TSRSSADDYS MAVLIRSRRRWA SSSSSSSSSSSSPPSKSQKTEK
Sbjct: 1   MATRLPRTKLFWSLTSRSSADDYSPMAVLIRSRRRWASSSSSSSSSSSSSPPSKSQKTEK 60

Query: 110 KFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWNSMEEGQFENLPGKGK 169
           KFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDL+N+VERRIWNSMEEGQFENLPGKGK
Sbjct: 61  KFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLINVVERRIWNSMEEGQFENLPGKGK 120

Query: 170 PLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKEAFESRGNEDL 229
           PLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLK+AFESRGNEDL
Sbjct: 121 PLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKKAFESRGNEDL 180

Query: 230 SKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 277
           SKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE
Sbjct: 181 SKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDRLVE 228

[Close]

BLAST of CmaCh06G004230.1 vs. NCBI nr
Match: XP_022144585.1 (uncharacterized protein LOC111014234 [Momordica charantia])

HSP 1 Score: 385.2 bits (988), Expect = 4.8e-103
Identity = 201/248 (81.05%), Postives = 214/248 (86.29%), Query Frame = 0


Query: 29  PISDKFHLGKAFRPSLARFSVMATRLPRTKLFWSPTSRSSADDYSQMAVLIRSRRRWASS 88
           P S +   GK  R +  R S MA RLPRTK FW    RS ADD S + V    RRR++SS
Sbjct: 86  PFSPELQSGKILRRARTRISAMAARLPRTKPFWYLIPRSPADDXSLVFVPTGFRRRFSSS 145

Query: 89  SSSSSSSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVE 148
           SSSSSSSSSS P+KSQKTEKK VDRLSSVID+VNDRKLPPELRGQRN+VRSETDL+N+VE
Sbjct: 146 SSSSSSSSSSSPNKSQKTEKKLVDRLSSVIDSVNDRKLPPELRGQRNAVRSETDLINVVE 205

Query: 149 RRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN 208
           RRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN
Sbjct: 206 RRIWNSMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSN 265

Query: 209 ISVWRSSLKEAFESRGNEDLSKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWE 268
           ISVWRSSL  AFES+ N D SKW+ES+EALKVQLQHINDKVFRYNLIVPFGRQM GLKWE
Sbjct: 266 ISVWRSSLNRAFESKRNGDHSKWSESTEALKVQLQHINDKVFRYNLIVPFGRQMFGLKWE 325

Query: 269 KELDRLVE 277
           KELDRLVE
Sbjct: 326 KELDRLVE 333

[Close]

BLAST of CmaCh06G004230.1 vs. TAIR 10
Match: AT5G03560.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 256.9 bits (655), Expect = 1.8e-68
Identity = 147/243 (60.49%), Postives = 177/243 (72.84%), Query Frame = 0


Query: 50  MATRLPRTKLFWSPTSRS---------SADDYSQMAV-------LIRSRRRWASSSSSSS 109
           MA RL R+ L  SP+SR          SA D +  A+        +R+   + SSSSS  
Sbjct: 1   MAVRLARS-LAASPSSRPSCLSLGNRFSASDITSSAINGGEFSDFVRA-FAFYSSSSSWW 60

Query: 110 SSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNLVERRIWN 169
           SS     + S++ EKK  +R S+VIDAV+DRKLPPELRG+R+ VRSETD++N+VE+RIW+
Sbjct: 61  SSPDDLTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINVVEQRIWH 120

Query: 170 SMEEGQFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWR 229
           SMEEG FENLPGKGKPLNL TNPHADPAEDTLYRIL+KNG APEWVELNKEIR+    WR
Sbjct: 121 SMEEGHFENLPGKGKPLNLHTNPHADPAEDTLYRILNKNGFAPEWVELNKEIRNKAKEWR 180

Query: 230 SSLKEAFESRGNEDLSKWTESSEALKVQLQHINDKVFRYNLIVPFGRQMSGLKWEKELDR 277
            SLK+A+  +  ED S W E S+ LK +L+ IN+ VFRYNLIVPFGRQM GLKWEKE+DR
Sbjct: 181 VSLKKAWTMKLEEDQSGWEERSDLLKNELKQINNMVFRYNLIVPFGRQMFGLKWEKEIDR 240

[Close]

BLAST of CmaCh06G004230.1 vs. TAIR 10
Match: AT5G03560.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 50  MATRLPRTKLFWSPTSRS---------SADDYSQMAV-------LIRSRRRWASSSSSSS 109
           MA RL R+ L  SP+SR          SA D +  A+        +R+   + SSSSS  
Sbjct: 1   MAVRLARS-LAASPSSRPSCLSLGNRFSASDITSSAINGGEFSDFVRA-FAFYSSSSSWW 60

Query: 110 SSSSSPPSKSQKTEKKFVDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNL 147
           SS     + S++ EKK  +R S+VIDAV+DRKLPPELRG+R+ VRS+ +  +L
Sbjct: 61  SSPDDLTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSKRNSNSL 111

The following BLAST results are available for this feature:

BLAST of CmaCh06G004230.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VCE1	7.4e-14	31.09	DnaJ homolog subfamily C member 28 OS=Mus musculus OX=10090 GN=Dnajc28 PE=1 SV=2	[more]
Q9NX36	3.1e-12	35.82	DnaJ homolog subfamily C member 28 OS=Homo sapiens OX=9606 GN=DNAJC28 PE=1 SV=2	[more]
P36677	4.1e-04	38.60	Uncharacterized protein YhdN OS=Escherichia coli (strain K12) OX=83333 GN=yhdN P...	[more]

BLAST of CmaCh06G004230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNC7	1.2e-139	96.27	dnaJ homolog subfamily C member 28-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KSG4	4.2e-121	100.00	dnaJ homolog subfamily C member 28-like OS=Cucurbita maxima OX=3661 GN=LOC111498...	[more]
A0A6J1CS21	2.3e-103	81.05	uncharacterized protein LOC111014234 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LGF4	3.1e-100	76.32	DUF1992 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G746580 PE=...	[more]
A0A1S3B761	8.0e-96	82.82	dnaJ homolog subfamily C member 28 OS=Cucumis melo OX=3656 GN=LOC103486543 PE=4 ...	[more]

BLAST of CmaCh06G004230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941444.1	2.4e-139	96.27	dnaJ homolog subfamily C member 28-like [Cucurbita moschata]	[more]
KAG6596520.1	5.4e-139	96.27	DnaJ-like subfamily C member 28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023005192.1	8.7e-121	100.00	dnaJ homolog subfamily C member 28-like [Cucurbita maxima]	[more]
XP_023540908.1	2.9e-116	97.37	dnaJ homolog subfamily C member 28 [Cucurbita pepo subsp. pepo] >KAG7028056.1 Dn...	[more]
XP_022144585.1	4.8e-103	81.05	uncharacterized protein LOC111014234 [Momordica charantia]	[more]

BLAST of CmaCh06G004230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03560.1	1.8e-68	60.49	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G03560.2	1.2e-06	42.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018961	DnaJ homologue, subfamily C, member 28, conserved domain	PFAM	PF09350	DUF1992	coord: 146..209 e-value: 1.2E-22 score: 79.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109
None	No IPR available	PANTHER	PTHR39158	OS08G0560600 PROTEIN	coord: 50..276

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G004230	CmaCh06G004230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004230.1:exon:2051	CmaCh06G004230.1:exon:2051	exon
CmaCh06G004230.1:exon:2050	CmaCh06G004230.1:exon:2050	exon
CmaCh06G004230.1:exon:2049	CmaCh06G004230.1:exon:2049	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004230.1:three_prime_utr	CmaCh06G004230.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004230.1:cds	CmaCh06G004230.1:cds_3	CDS
CmaCh06G004230.1:cds	CmaCh06G004230.1:cds_2	CDS
CmaCh06G004230.1:cds	CmaCh06G004230.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G004230.1	CmaCh06G004230.1-protein	polypeptide