CmaCh06G003670.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G003670.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-binding protein S1FA
Location	Cma_Chr06: 1701578 .. 1703402 (-)
Sequence length	992
RNA-Seq Expression	CmaCh06G003670.1
Synteny	CmaCh06G003670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCGGCCCATAGAAAACGCGGGACTCTGATGGACCAAATCGCCGATTTATATGAAATCTTACCCTTTTTTTGCTGACATTTCTCCGTCAACGCTGCACCGCCAATCCGATCCAATTTCGTATATTCGGGATCTTCTTGCTGGCCGATCTAGCCAGCTCTGAGTCGTAGTCATGGCGTCAGCCAATGGCAAGGTATGATTGTCGAAGGAATCGTGCTTAGTTTCCTGCTTTTTGCGTTCAATTTCACGATCTGCCCCTTTTGGATTCCATTTTTTTTATTGTGTTCGAATGCCTTTTTCCTTCAATTTTATTGTTTGGATCTATCTGTGTGTGTTTAGAATCGTTTTTTCTTCTTTTCTGAAAGCTTGTTTTCATCTGGTTGGGCGGTGATTTGATTAGCGACTGCTGGTTTGGATCGGAATTTTGTTTTGGTTTTCTTTTTGGTTGGAATTCTATGGGAGGAAAATTGAGCTTCTGATTGTTTGGCCCACGCATTGTAGGACCTGTAAATCTTGGTTTCTGGTGTGGAATTTGTCTTTTTGGGGAAATTTTAGGGAAAGATGAACCGTGCAGGCGAATTGACGTTTCAAATTGGGGAATTTCGAGCTGGTAGGTTGTGAATGTGTGATCGGACTGCTCTGTTGTATATGTGTTCATCATTAAAGCTTGGATAGTATTTGAAACTATTATTTGTTTTATGGAGAAATAGTTTAAGATCGAACGGGGCTAGGTTTAAGAAATCTGATGAAGAGAAGCCAATTTGGTGTATGCCCTAGTTTTGAATTGAGATAAATTTGAACAGAACTGCCTGTTATTAATTCTTGAATGGTAATTTCTCATTAATAAAAGTGGATCTCCATTTCTGAAAGCGTCTAATTAGTAATTCCTTCATGAAATCTATGCATAATTAGATCATCCATCACTCAAGGAAAACATGAAATGGCGGGTTTTGTTCATTGAAGAATCAACTTCAATTTTGTGGCTCATTGTGATGGTGCATTAATTCTTGTTCTGTAAGTGAACAGGGAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAGAAAAAAATGACTCAAGTGTTTAACTTCCCGAGGTTTCCTTCTTAGAACGTTTTGATTTTCCACAATTTTCATACATAGACTGCCTAGAAAGTTCTTACAGTTGTTTATTTCTTTTATTTGCTGTCTCTTAACTCTTCAGGAATTGATCTTGATTGTGAGTTTCTAATTCATATTACCTTAAATGGGCTCTTTTCTCAAGGTTCCATTGGTTCTTTTCTGCTTATTCTCCTCTTTTTGGTACACACCAGAAAGATTTCTGTTTCTCCATCTTTAAACAGCCTTAACTCGGTCCTTTTTACTGTTAGAATCTTTTCTTTTTCTGCCTTTGAATCTTGTAATAAATGGTGGGGTTAGATTGTAGAGTCTCTATAGGGTTGAGTGATGGATTTGTGTAACTCTCTGTTTAGAAGATTAGAACACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAGAGACATGTTCCTCAAGGGGCCATTACTACCACTTATTTGAATCACGTGGAACACTAGAGACCATTGAAGCACATAAAAGCTTACCTTTTACTGAAGCAAGTCATCTTGTCCCCCCCCCC

mRNA sequence

AGCGGCCCATAGAAAACGCGGGACTCTGATGGACCAAATCGCCGATTTATATGAAATCTTACCCTTTTTTTGCTGACATTTCTCCGTCAACGCTGCACCGCCAATCCGATCCAATTTCGTATATTCGGGATCTTCTTGCTGGCCGATCTAGCCAGCTCTGAGTCGTAGTCATGGCGTCAGCCAATGGCAAGGGAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAGAAAAAAATGACTCAAGTGTTTAACTTCCCGAGGTTTCCTTCTTAGAACGTTTTGATTTTCCACAATTTTCATACATAGACTGCCTAGAAAGTTCTTACAGTTGTTTATTTCTTTTATTTGCTGTCTCTTAACTCTTCAGGAATTGATCTTGATTGTGAGTTTCTAATTCATATTACCTTAAATGGGCTCTTTTCTCAAGGTTCCATTGGTTCTTTTCTGCTTATTCTCCTCTTTTTGGTACACACCAGAAAGATTTCTGTTTCTCCATCTTTAAACAGCCTTAACTCGGTCCTTTTTACTGTTAGAATCTTTTCTTTTTCTGCCTTTGAATCTTGTAATAAATGGTGGGGTTAGATTGTAGAGTCTCTATAGGGTTGAGTGATGGATTTGTGTAACTCTCTGTTTAGAAGATTAGAACACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAGAGACATGTTCCTCAAGGGGCCATTACTACCACTTATTTGAATCACGTGGAACACTAGAGACCATTGAAGCACATAAAAGCTTACCTTTTACTGAAGCAAGTCATCTTGTCCCCCCCCCC

Coding sequence (CDS)

ATGGCGTCAGCCAATGGCAAGGGAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

Protein sequence

MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Homology

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.1e-23
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 11 MNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLK 70
          +N+V AKG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 71 QGVSAPGE 79
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-20
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 16 AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSA 75
          AKG NPGL+VLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  
Sbjct: 14 AKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPV 73

Query: 76 PGE 79
          PGE
Sbjct: 74 PGE 76

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-20
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 4  ANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKK 63
          A+   NV+ +   KG NPG++VL++V   LL+F +GNYALY+YAQK LPP+KKKPVSKKK
Sbjct: 6  ADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKK 65

Query: 64 MKRERLKQGVSAPGE 79
          MKRE+LKQGVSAPGE
Sbjct: 66 MKREKLKQGVSAPGE 80

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-20
Identity = 47/65 (72.31%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 14 VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          + +KG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 5.7e-20
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  V AKG NPGL+VLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKK+KRE+LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy TrEMBL
Match: A0A6J1KWU8 (DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498311 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy TrEMBL
Match: A0A6J1GGV1 (DNA-binding protein S1FA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454095 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGK NVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy TrEMBL
Match: A0A0A0LAW3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.3e-30
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy TrEMBL
Match: A0A1S3B680 (DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDV AKGFNP L+VLLLVGGLLL FL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLTFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. ExPASy TrEMBL
Match: A0A6J1IZV9 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111482175 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-29
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDV AKG NP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKR+RLKQGVSAPGE
Sbjct: 61 KKKMKRDRLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. NCBI nr
Match: XP_023005220.1 (DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima] >XP_023539625.1 DNA-binding protein S1FA-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6596464.1 DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028009.1 DNA-binding protein S1FA2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. NCBI nr
Match: XP_022951181.1 (DNA-binding protein S1FA-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGK NVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. NCBI nr
Match: XP_038905724.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 9.9e-30
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDV AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. NCBI nr
Match: KAE8651038.1 (hypothetical protein Csa_000825 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1   MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
           MASANGKGNV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 819 MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 878

Query: 61  KKKMKRERLKQGVSAPGE 79
           KKKMKRERLKQGVSAPGE
Sbjct: 879 KKKMKRERLKQGVSAPGE 896

[Close]

BLAST of CmaCh06G003670.1 vs. NCBI nr
Match: XP_004137812.1 (DNA-binding protein S1FA [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmaCh06G003670.1 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 16 AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSA 75
          AKG NPGL+VLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  
Sbjct: 14 AKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPV 73

Query: 76 PGE 79
          PGE
Sbjct: 74 PGE 76

[Close]

BLAST of CmaCh06G003670.1 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-21
Identity = 47/65 (72.31%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 14 VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          + +KG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of CmaCh06G003670.1 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-21
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  V AKG NPGL+VLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKK+KRE+LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]

BLAST of CmaCh06G003670.1 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 46 YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE 79
          +A KNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 38

The following BLAST results are available for this feature:

BLAST of CmaCh06G003670.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	7.1e-23	77.94	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
P42551	2.5e-20	79.37	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q7XLX6	2.5e-20	66.67	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]
Q93VI0	4.3e-20	72.31	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]
Q42337	5.7e-20	65.38	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]

BLAST of CmaCh06G003670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWU8	2.3e-32	100.00	DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GGV1	1.9e-31	98.72	DNA-binding protein S1FA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LAW3	6.3e-30	92.31	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1	[more]
A0A1S3B680	1.8e-29	92.31	DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1	[more]
A0A6J1IZV9	5.3e-29	91.03	DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111482175 PE=3 S...	[more]

BLAST of CmaCh06G003670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005220.1	4.7e-32	100.00	DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima] >XP_023539625.1 DNA-...	[more]
XP_022951181.1	4.0e-31	98.72	DNA-binding protein S1FA-like isoform X2 [Cucurbita moschata]	[more]
XP_038905724.1	9.9e-30	93.59	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
KAE8651038.1	1.3e-29	92.31	hypothetical protein Csa_000825 [Cucumis sativus]	[more]
XP_004137812.1	1.3e-29	92.31	DNA-binding protein S1FA [Cucumis sativus]	[more]

BLAST of CmaCh06G003670.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53370.1	1.8e-21	79.37	S1FA-like DNA-binding protein	[more]
AT3G09735.1	3.1e-21	72.31	S1FA-like DNA-binding protein	[more]
AT2G37120.1	4.0e-21	65.38	S1FA-like DNA-binding protein	[more]
AT3G53370.2	6.7e-08	78.79	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 14..78 e-value: 2.5E-39 score: 133.3
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 6..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 6..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G003670	CmaCh06G003670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G003670.1:exon:2211	CmaCh06G003670.1:exon:2211	exon
CmaCh06G003670.1:exon:2210	CmaCh06G003670.1:exon:2210	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G003670.1:three_prime_utr	CmaCh06G003670.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G003670.1:cds	CmaCh06G003670.1:cds_2	CDS
CmaCh06G003670.1:cds	CmaCh06G003670.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G003670.1:five_prime_utr	CmaCh06G003670.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G003670.1	CmaCh06G003670.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding