CmaCh06G002500.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002500.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DUF962 domain-containing protein
Location	Cma_Chr06: 1252393 .. 1252692 (+)
Sequence length	300
RNA-Seq Expression	CmaCh06G002500.1
Synteny	CmaCh06G002500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAGCACTCAAAACCCTCGACGAGACGATGGCACTTTATTGGAACTCTCTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAATATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

mRNA sequence

ATGAACCAGCACTCAAAACCCTCGACGAGACGATGGCACTTTATTGGAACTCTCTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAATATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

Coding sequence (CDS)

ATGAACCAGCACTCAAAACCCTCGACGAGACGATGGCACTTTATTGGAACTCTCTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAATATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

Protein sequence

MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF

Homology

[Close]

BLAST of CmaCh06G002500.1 vs. ExPASy TrEMBL
Match: A0A6J1I767 (uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS
Sbjct: 14  MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. ExPASy TrEMBL
Match: A0A6J1G2W8 (uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC111450283 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS
Sbjct: 14  MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. ExPASy TrEMBL
Match: A0A6J1CWL4 (uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015066 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.3e-51
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAWYSHFFVEENVPAS
Sbjct: 14  MNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAWYSHFFVEENVPAS 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. ExPASy TrEMBL
Match: A0A1S4DUQ8 (uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAWYSHFFVEENVPA+
Sbjct: 14  MNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAWYSHFFVEENVPAT 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. ExPASy TrEMBL
Match: A0A5A7TMP5 (DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001060 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAWYSHFFVEENVPA+
Sbjct: 14  MNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAWYSHFFVEENVPAT 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. NCBI nr
Match: XP_022946132.1 (uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022971548.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971549.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971550.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_023538975.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_023538976.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_038903172.1 uncharacterized protein LOC120089838 [Benincasa hispida] >KAG7027913.1 hypothetical protein SDJN02_09092, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 8.9e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS
Sbjct: 14  MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. NCBI nr
Match: XP_022145672.1 (uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncharacterized protein LOC111015066 [Momordica charantia])

HSP 1 Score: 209.5 bits (532), Expect = 1.3e-50
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAWYSHFFVEENVPAS
Sbjct: 14  MNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAWYSHFFVEENVPAS 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. NCBI nr
Match: XP_008442469.1 (PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >KAA0044148.1 DUF962 domain-containing protein [Cucumis melo var. makuwa] >TYK24989.1 DUF962 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.2e-50
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAWYSHFFVEENVPA+
Sbjct: 14  MNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAWYSHFFVEENVPAT 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 74  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmaCh06G002500.1 vs. NCBI nr
Match: XP_004137736.1 (uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical protein Csa_001372 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFF+EENVPA+
Sbjct: 14  MNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFIEENVPAT 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           F HPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ F
Sbjct: 74  FAHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQIF 112

[Close]

BLAST of CmaCh06G002500.1 vs. NCBI nr
Match: PQM42170.1 (uncharacterized protein Pyn_13924 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           MNQHSKPSTRRWHF+GTL SIFFFLCSLLF+WW LF VPL GYG AWYSHFFVE NVPA+
Sbjct: 14  MNQHSKPSTRRWHFVGTLVSIFFFLCSLLFNWWLLFLVPLAGYGCAWYSHFFVEGNVPAT 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 100
           FGHPFWSLLCDFKMF LMLTGNMDREIKRLGKRPVLQ F
Sbjct: 74  FGHPFWSLLCDFKMFALMLTGNMDREIKRLGKRPVLQGF 112

[Close]

BLAST of CmaCh06G002500.1 vs. TAIR 10
Match: AT3G09085.1 (Protein of unknown function (DUF962) )

HSP 1 Score: 157.1 bits (396), Expect = 7.1e-39
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1   MNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPAS 60
           M QHS PSTRR HFIG ++SI   +CS+L +WWFL  VPL GYGFAWYSHFFVE NVPAS
Sbjct: 14  MMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLLGYGFAWYSHFFVEGNVPAS 73

Query: 61  FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ 98
           FGHP WS LCD KMF LMLTG+M+RE+KRLGKRP+LQ
Sbjct: 74  FGHPLWSFLCDLKMFSLMLTGSMEREMKRLGKRPLLQ 110

The following BLAST results are available for this feature:

BLAST of CmaCh06G002500.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G002500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I767	4.3e-52	100.00	uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232...	[more]
A0A6J1G2W8	4.3e-52	100.00	uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1CWL4	6.3e-51	97.98	uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A1S4DUQ8	1.1e-50	96.97	uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=...	[more]
A0A5A7TMP5	1.1e-50	96.97	DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CmaCh06G002500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946132.1	8.9e-52	100.00	uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 unchar...	[more]
XP_022145672.1	1.3e-50	97.98	uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncha...	[more]
XP_008442469.1	2.2e-50	96.97	PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 P...	[more]
XP_004137736.1	1.1e-49	94.95	uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical ...	[more]
PQM42170.1	2.1e-45	88.89	uncharacterized protein Pyn_13924 [Prunus yedoensis var. nudiflora]	[more]

BLAST of CmaCh06G002500.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09085.1	7.1e-39	74.23	Protein of unknown function (DUF962)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009305	2-hydroxy-palmitic acid dioxygenase Mpo1-like	PFAM	PF06127	DUF962	coord: 2..83 e-value: 7.9E-24 score: 83.6
None	No IPR available	PANTHER	PTHR34205	TRANSMEMBRANE PROTEIN	coord: 1..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G002500	CmaCh06G002500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002500.1:exon:1027	CmaCh06G002500.1:exon:1027	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002500.1:cds	CmaCh06G002500.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002500.1	CmaCh06G002500.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane