CmaCh06G002080.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002080.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Sel1-like protein
Location	Cma_Chr06: 1064192 .. 1067175 (-)
Sequence length	987
RNA-Seq Expression	CmaCh06G002080.1
Synteny	CmaCh06G002080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAGACGCTAGACCTTTTTCCTGGGTTTTTTCCTTTCCCTTTTTCTTTTCCATTTTTTAACGAGCCAGAGGAAAACAGTTTCCGTACCGGCAAGAAGGAAGGTAAGGAAAAACCGATTCCGTTATCAAATTCTTACATTAATCCCTTCAAGACGAGTTAATTTTTCTTAATCTCTTCTTCGTTTTTCATGAAATCGATTTCGGTTCAATGATTTTTTTTACAAAACAGCGTTTTTGGTGCCTCAGAATCTCGCCAAATCACAAAGTCAAGGTTTCGGTTGATTAATCGAAGCCGTTAGTGTTGAAATAGAATGGAGATTAGCGGAGGAACAGAAGCCTTGAATCGCGTTCCATTATCAGAAGTTGTTTCCGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGGGGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGTGACTCTTTCCTATCAATTAATGAAGATCCTTATTGCTTAATTCCTCCCAGTTTTGACGAAATCAAGAACTGAAGTTTATTGAAATTCCTGTGGTTATTATATTGATATATGTGGGAATTATTGGTCAACCATAAGCTTCGTAAATATTGCAAATTCTGTTACGTTTTGGCCAAAAATAGTTATCGGTTTTCTCAGGTTGCTTGGTTCTCTGTAATTTCTGGATTTGTTGCAACTTTGAGGAGATTGGAACATCTCTTAATGTCTTTCTGAAACATTTTTGAAAATTATGCTTGTTTGTTAGCAATTCTTTGGCAAGGTTTTCACTTTCTATGAAAATACATTTGAACTTAAATTTCCAAAACAAAATAAAAGTTTTTAAAAACTACTTACTTTTGTTTCCGAAGTTCTGCTTGAATTTTGAATATGTTCTTAAAAAAGTAGTTAAAAAACAAGGAACTATAGATTAGGTGGGAAATAATTTTACAAGGTTAATTTTCAAAAGCAGAAATCCAAAACTAAATGGTTATAAAAAAGGAACTAATTATTTGATTTTTTTTTTTTTTTTTTGGATGAAATCCTATTGGCTTAGTGGAATTTTATGGTTTCAAATGCCTTTGATTTCAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGGTCATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTGATTTGCATTTTTTTAAAGAATATAAATCTCTTTTTTGTTTTAATGTCTTTTCCTAACTTTATCCATTATCTATAATTATCTCTTGCTAATTTCTTAAGCTAACTTCGATTGTGATAGGTTATAATGCTAGCGATTCGGACTCAGATGACGTGACTCACGATTCTTAACTAGATCAGTGCTGTATGTCATGTCAAAACAACCACTGGTATCTTTAGCACAACCTTTCTTTCGATATTTAACTTCTTGTTCTATGGCTTTTATGTGTAACATCAATTATCCTCTGTTGCACATGTGAAAATGTTCTAGTAACAGGGAGAAAGTCGATAAAAGATGACGTTTTTGCTTACTGCTTGAGGATTGATCTTTTATTTTTTATGATATGACATACCTTATTGTTGAGTTCTTAAAACTTCAGCTATAAGTTGAGGGTGGGGGGCATGTCTATTGGAAAACAACTCCCTCCACTCGATCCTACCACATTGTAGGTACTCTTATCTAAACCTTGAATACGTAATTAAATTGTAATCTCTAGTTTTTCTCTCCTACATCTAATTATTGCTCTAGATCTAGCTTCCGTGAACAATTTTGGGCGGGGGATCTGTATGATTTTGAATATCAAGTTTGTTGAAGTTAAAATTGTAGTTCATAAGCCAATCTGAGCATAGCTTAATTGGTTCTTGTATTGACCAAGAGGTGAGTATATGTCTAACCTCACATATTGAACTAAAAAGTATTAATAGGTCATAAATGTTGATTACAAAGGGATCTTCTGTCTTACATGCTCCATGTCACTTGTTTGTTGTTCACTTATGCAAGTCTTGCTTTCTAAAAGATGGCTCTTTCTTGTTCTTGTTTTTGTTTTGTAAAAGGAAATTCCACCTGTGCTTTAGTCCTTCTAGCTGTGAAATTTTGTCTGTACTTCTCATGAAAACGATCGAAGAGGCACGCACAAATTTTTGTTTCTTATAACAAGCAAATCTTTGTTATGTCAAGATCTTTGGTTTCTGTTTATTTAAACCCTTGTTTTTCTCGAGATAAGATTTGATTATCTTAGACTTATATGTTATACTTCAAATCAAGTTTCCACTCAATGGCTGGCTAGAATGATCGTTTTATCCTCTAAACATGTTTACATGTCTTTTCACCAATCAAGCTGATGTTTGTGAGACAAGCTAGCTGTATAATGAATGTGCAATTACAGGTCATGATCTGCTATGGTTGTTTGTGTTGTTCAAACTGGCCAAACTGTGCAATTCTTTAAGTTTGTACTCGGTGAAGTGCTTTTCTTGAAAACACTTTTGATTCACTTTGATCTTTTGATTTTGTAGGATGTGCTTTTCACTTGGGGAACTCTACTTGCTCAGCAACATTCGTAGCTGCGAAGAACAACATTCGTGCACTTCCTGAATGTTGAATTTAACGGATGTAATATGCTTTGATTTCACCTTTACCCTACAAAGAATCTGTGGCACTTCCCTGTGGTCAAATAGGCTAAATCCTATATCCACTTTTTATTCTGTTTAGGTTGCCTCTGTTCACTGTCTGCCAGACATTTTCAATTGATTTTTGCATAATTGTTAAGGTCTGAACTCTTTTAGTTGCTAATAAAATTCCCTTTTAAGAACAACCCGGGTGCCTTCTCTTTGGTCTTTCCTCTTTTTTAGTTAGTTGCTAGCCTATAACACCTTTATCTTGCTGTTAAAGGTATAAAATCTCACCAAATTCCTTCATTCTTCTTTAAATAAGGATGAGAGATGGTCATTGAGGCAGGGAGATCGGTTATAGTTCAT

mRNA sequence

TCCAGACGCTAGACCTTTTTCCTGGGTTTTTTCCTTTCCCTTTTTCTTTTCCATTTTTTAACGAGCCAGAGGAAAACAGTTTCCGTACCGGCAAGAAGGAAGCGTTTTTGGTGCCTCAGAATCTCGCCAAATCACAAAGTCAAGGTTTCGGTTGATTAATCGAAGCCGTTAGTGTTGAAATAGAATGGAGATTAGCGGAGGAACAGAAGCCTTGAATCGCGTTCCATTATCAGAAGTTGTTTCCGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGGGGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGGTCATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGCGATTCGGACTCAGATGACGTGACTCACGATTCTTAACTAGATCAGTGCTGTATGTCATGTCAAAACAACCACTGGATGTGCTTTTCACTTGGGGAACTCTACTTGCTCAGCAACATTCGTAGCTGCGAAGAACAACATTCGTGCACTTCCTGAATGTTGAATTTAACGGATGTAATATGCTTTGATTTCACCTTTACCCTACAAAGAATCTGTGGCACTTCCCTGTGGTCAAATAGGCTAAATCCTATATCCACTTTTTATTCTGTTTAGGTTGCCTCTGTTCACTGTCTGCCAGACATTTTCAATTGATTTTTGCATAATTGTTAAGGTCTGAACTCTTTTAGTTGCTAATAAAATTCCCTTTTAAGAACAACCCGGGTGCCTTCTCTTTGGTCTTTCCTCTTTTTTAGTTAGTTGCTAGCCTATAACACCTTTATCTTGCTGTTAAAGGTATAAAATCTCACCAAATTCCTTCATTCTTCTTTAAATAAGGATGAGAGATGGTCATTGAGGCAGGGAGATCGGTTATAGTTCAT

Coding sequence (CDS)

ATGGAGATTAGCGGAGGAACAGAAGCCTTGAATCGCGTTCCATTATCAGAAGTTGTTTCCGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGGGGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGGTCATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGCGATTCGGACTCAGATGACGTGACTCACGATTCTTAA

Protein sequence

MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS

Homology

[Close]

BLAST of CmaCh06G002080.1 vs. ExPASy TrEMBL
Match: A0A6J1I270 (uncharacterized protein LOC111470221 OS=Cucurbita maxima OX=3661 GN=LOC111470221 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. ExPASy TrEMBL
Match: A0A6J1F1H3 (uncharacterized protein LOC111441393 OS=Cucurbita moschata OX=3662 GN=LOC111441393 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           ME SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. ExPASy TrEMBL
Match: A0A1S3B5I4 (uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD++T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. ExPASy TrEMBL
Match: A0A5D3DNP0 (Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00440 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD++T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. ExPASy TrEMBL
Match: A0A6J1DSS4 (uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024062 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE L+RVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. NCBI nr
Match: XP_022971526.1 (uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971528.1 uncharacterized protein LOC111470221 [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 6.5e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. NCBI nr
Match: XP_022934166.1 (uncharacterized protein LOC111441393 [Cucurbita moschata] >XP_022934245.1 uncharacterized protein LOC111441393 [Cucurbita moschata] >XP_022934321.1 uncharacterized protein LOC111441393 [Cucurbita moschata] >KAG6596323.1 hypothetical protein SDJN03_09503, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027875.1 hypothetical protein SDJN02_09052 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           ME SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. NCBI nr
Match: XP_023538764.1 (uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo] >XP_023538765.1 uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo] >XP_023538766.1 uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 7.2e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEA NRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. NCBI nr
Match: XP_008442362.1 (PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442364.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_038903442.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903443.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903444.1 uncharacterized protein LOC120090028 [Benincasa hispida] >KAA0044203.1 Sel1-like protein [Cucumis melo var. makuwa] >TYK24929.1 Sel1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD++T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. NCBI nr
Match: XP_022157335.1 (uncharacterized protein LOC111024062 [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 4.3e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE L+RVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+T DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of CmaCh06G002080.1 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-35
Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 4   SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGR 63
           + G++ +NRVPL++VV DCV+RWF+DTL EAK GD+ MQVLVGQMY SGYGIP+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYNASDSDSDD 96
            W+ KASR+RSS W+VSDK PGYNASDSDS+D
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGYNASDSDSND 160

[Close]

BLAST of CmaCh06G002080.1 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 144.1 bits (362), Expect = 6.3e-35
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 13  VPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRS 72
           VPLS VVSDC KRWFKDTL EAK G+I MQVL+GQMYYSGYG+P+DA+KGR+W+TKASR 
Sbjct: 55  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114

Query: 73  RSSVWKVSDKHPGYNASDSDSD 95
           RSSVWKV DK PGYNASDSDS+
Sbjct: 115 RSSVWKVIDKRPGYNASDSDSE 136

[Close]

BLAST of CmaCh06G002080.1 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-31
Identity = 57/84 (67.86%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 4   SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGR 63
           + G++ +NRVPL++VV DCV+RWF+DTL EAK GD+ MQVLVGQMY SGYGIP+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYN 88
            W+ KASR+RSS W+VSDK PG N
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGNN 152

The following BLAST results are available for this feature:

BLAST of CmaCh06G002080.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G002080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I270	3.1e-50	100.00	uncharacterized protein LOC111470221 OS=Cucurbita maxima OX=3661 GN=LOC111470221...	[more]
A0A6J1F1H3	2.7e-49	98.00	uncharacterized protein LOC111441393 OS=Cucurbita moschata OX=3662 GN=LOC1114413...	[more]
A0A1S3B5I4	1.6e-46	93.00	uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=...	[more]
A0A5D3DNP0	1.6e-46	93.00	Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A6J1DSS4	2.1e-46	93.00	uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of CmaCh06G002080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971526.1	6.5e-50	100.00	uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharac...	[more]
XP_022934166.1	5.5e-49	98.00	uncharacterized protein LOC111441393 [Cucurbita moschata] >XP_022934245.1 unchar...	[more]
XP_023538764.1	7.2e-49	98.00	uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo] >XP_023538765....	[more]
XP_008442362.1	3.3e-46	93.00	PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 P...	[more]
XP_022157335.1	4.3e-46	93.00	uncharacterized protein LOC111024062 [Momordica charantia]	[more]

BLAST of CmaCh06G002080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05360.1	2.2e-35	70.65	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT2G38450.1	6.3e-35	80.49	CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha...	[more]
AT5G05360.2	4.2e-31	67.86	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006597	Sel1-like repeat	SMART	SM00671	sel1	coord: 39..74 e-value: 0.002 score: 27.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 20..83 e-value: 1.3E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	PANTHER	PTHR36792:SF6	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..100
None	No IPR available	PANTHER	PTHR36792	EXPRESSED PROTEIN	coord: 1..100
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 34..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G002080	CmaCh06G002080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002080.1:exon:180	CmaCh06G002080.1:exon:180	exon
CmaCh06G002080.1:exon:179	CmaCh06G002080.1:exon:179	exon
CmaCh06G002080.1:exon:178	CmaCh06G002080.1:exon:178	exon
CmaCh06G002080.1:exon:177	CmaCh06G002080.1:exon:177	exon
CmaCh06G002080.1:exon:176	CmaCh06G002080.1:exon:176	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002080.1:three_prime_utr	CmaCh06G002080.1:three_prime_utr_2	three_prime_UTR
CmaCh06G002080.1:three_prime_utr	CmaCh06G002080.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002080.1:cds	CmaCh06G002080.1:cds_3	CDS
CmaCh06G002080.1:cds	CmaCh06G002080.1:cds_2	CDS
CmaCh06G002080.1:cds	CmaCh06G002080.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002080.1:five_prime_utr	CmaCh06G002080.1:five_prime_utr_2	five_prime_UTR
CmaCh06G002080.1:five_prime_utr	CmaCh06G002080.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G002080.1	CmaCh06G002080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding