CmaCh05G010330.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G010330.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger protein 830-like isoform X1
Location	Cma_Chr05: 8275366 .. 8276712 (+)
Sequence length	1347
RNA-Seq Expression	CmaCh05G010330.1
Synteny	CmaCh05G010330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAGAATGTTGCTGCAGGAAAAACCCGACCCAAATGTATTCAGAGAAAAGAGAAAGGCTGAGATGGCATCAACGTCTTCCGACAACGTCCAATCATCTTATATGAAGAAGACTCCAAAGGGCGAGTTGAGTTGTGCACTGTGTCAAGTTACCGTGACAAACGAAAAGGTTTTTAATGAACACCTTCATGGCAAGAAGCACAAGCGCAGAGAAGCTGGTCTGAGGGCTCAAAATGCAAGCAAACTTTTCCAGGCTGCACCACCCGAGCCATTATCTTACAAAAGGATGAAGCTCGAGAAGACGTTTGGCTCTGCAGGTGCAATCGAACTAAAGGAGTCGAAAGATGGAGAAACTCTTCAAGGTGAGAAAACGGAAGGTAGTTTTGTCACGAACGCATTAATTCCAAACTTTCTGGAATCAGGTGACAAAGAGGATAATGAGCAACAGAACCAGCAGAACCAGAACAATAACCTGGAGAACCTTCTGAAATCAGGTGAGAAAGAGGATGATAAGCAAGAGAACCTGCAGAACCAGAACCAAAACCTGCAGAACTTTCTTAAATCAGATGACATGGAGGATAATAAGCAACCGAACCTGCAGAACTTTCCGAAATCAGATGATGGTGAGAATAATAAGCAACAGAGCGTGCATAACCCAAACCTGCAGAACTTTCCGAAATCAGATGACAGGGAGGATAATAATCAACAGAGCCTGCATAACTCGAACCTGCAGAACTTTCCAAAATCAGATGATGGGGAGGATAATAAACAACAGATCCTGCATAACCCGAACCTGCAGAACTTTCCGAAATCAGATGACAGGGAGGATAATAATCAACAGAGCCTGCATAACCCTAACCTGCAGAACTTTCTGAATCCAGGTGAAATAGAGGATGATAATAAGCAACAAAACCTGCAAAGCATTCTGGAATCGGGTGACGAAGAGGAGGATGAGGAACAGAACGTGCAGAACCTTTTGAAATCAGGCGAAAACGAGGATAATACGCAACAGAACTTGCAGAACCTTTTGAATTCGCAACAGAATCAGAACCCGCAGAACCTTTTGAATTCGCAACAGAACCAGAACCTGCAGAACCTTGTGAATTTGCAACAGAACCAGAACCTGCAGAACCTTGTGAATTTGCAACAGAACCAGGCTGTGTTTGGGCAAAACTTTACCACTGAGGACCTTCTTGCGGCGAAAAAGAAGTTTAAGTTTTGGTGTAAAAAGTGCAAAGTTGGTGCTTATGCTGCAGGCGTGATGGTTGCTCATTTGAATGGGAAGAAACACCAAGCAAATCTTCAACAACCTGATCAAACTTGGACAGGGAGGCCATTTTAG

mRNA sequence

ATGGATTTGAGAATGTTGCTGCAGGAAAAACCCGACCCAAATGTATTCAGAGAAAAGAGAAAGGCTGAGATGGCATCAACGTCTTCCGACAACGTCCAATCATCTTATATGAAGAAGACTCCAAAGGGCGAGTTGAGTTGTGCACTGTGTCAAGTTACCGTGACAAACGAAAAGGTTTTTAATGAACACCTTCATGGCAAGAAGCACAAGCGCAGAGAAGCTGGTCTGAGGGCTCAAAATGCAAGCAAACTTTTCCAGGCTGCACCACCCGAGCCATTATCTTACAAAAGGATGAAGCTCGAGAAGACGTTTGGCTCTGCAGGTGCAATCGAACTAAAGGAGTCGAAAGATGGAGAAACTCTTCAAGGTGAGAAAACGGAAGGTAGTTTTGTCACGAACGCATTAATTCCAAACTTTCTGGAATCAGGTGACAAAGAGGATAATGAGCAACAGAACCAGCAGAACCAGAACAATAACCTGGAGAACCTTCTGAAATCAGGTGAGAAAGAGGATGATAAGCAAGAGAACCTGCAGAACCAGAACCAAAACCTGCAGAACTTTCTTAAATCAGATGACATGGAGGATAATAAGCAACCGAACCTGCAGAACTTTCCGAAATCAGATGATGGTGAGAATAATAAGCAACAGAGCGTGCATAACCCAAACCTGCAGAACTTTCCGAAATCAGATGACAGGGAGGATAATAATCAACAGAGCCTGCATAACTCGAACCTGCAGAACTTTCCAAAATCAGATGATGGGGAGGATAATAAACAACAGATCCTGCATAACCCGAACCTGCAGAACTTTCCGAAATCAGATGACAGGGAGGATAATAATCAACAGAGCCTGCATAACCCTAACCTGCAGAACTTTCTGAATCCAGGTGAAATAGAGGATGATAATAAGCAACAAAACCTGCAAAGCATTCTGGAATCGGGTGACGAAGAGGAGGATGAGGAACAGAACGTGCAGAACCTTTTGAAATCAGGCGAAAACGAGGATAATACGCAACAGAACTTGCAGAACCTTTTGAATTCGCAACAGAATCAGAACCCGCAGAACCTTTTGAATTCGCAACAGAACCAGAACCTGCAGAACCTTGTGAATTTGCAACAGAACCAGAACCTGCAGAACCTTGTGAATTTGCAACAGAACCAGGCTGTGTTTGGGCAAAACTTTACCACTGAGGACCTTCTTGCGGCGAAAAAGAAGTTTAAGTTTTGGTGTAAAAAGTGCAAAGTTGGTGCTTATGCTGCAGGCGTGATGGTTGCTCATTTGAATGGGAAGAAACACCAAGCAAATCTTCAACAACCTGATCAAACTTGGACAGGGAGGCCATTTTAG

Coding sequence (CDS)

ATGGATTTGAGAATGTTGCTGCAGGAAAAACCCGACCCAAATGTATTCAGAGAAAAGAGAAAGGCTGAGATGGCATCAACGTCTTCCGACAACGTCCAATCATCTTATATGAAGAAGACTCCAAAGGGCGAGTTGAGTTGTGCACTGTGTCAAGTTACCGTGACAAACGAAAAGGTTTTTAATGAACACCTTCATGGCAAGAAGCACAAGCGCAGAGAAGCTGGTCTGAGGGCTCAAAATGCAAGCAAACTTTTCCAGGCTGCACCACCCGAGCCATTATCTTACAAAAGGATGAAGCTCGAGAAGACGTTTGGCTCTGCAGGTGCAATCGAACTAAAGGAGTCGAAAGATGGAGAAACTCTTCAAGGTGAGAAAACGGAAGGTAGTTTTGTCACGAACGCATTAATTCCAAACTTTCTGGAATCAGGTGACAAAGAGGATAATGAGCAACAGAACCAGCAGAACCAGAACAATAACCTGGAGAACCTTCTGAAATCAGGTGAGAAAGAGGATGATAAGCAAGAGAACCTGCAGAACCAGAACCAAAACCTGCAGAACTTTCTTAAATCAGATGACATGGAGGATAATAAGCAACCGAACCTGCAGAACTTTCCGAAATCAGATGATGGTGAGAATAATAAGCAACAGAGCGTGCATAACCCAAACCTGCAGAACTTTCCGAAATCAGATGACAGGGAGGATAATAATCAACAGAGCCTGCATAACTCGAACCTGCAGAACTTTCCAAAATCAGATGATGGGGAGGATAATAAACAACAGATCCTGCATAACCCGAACCTGCAGAACTTTCCGAAATCAGATGACAGGGAGGATAATAATCAACAGAGCCTGCATAACCCTAACCTGCAGAACTTTCTGAATCCAGGTGAAATAGAGGATGATAATAAGCAACAAAACCTGCAAAGCATTCTGGAATCGGGTGACGAAGAGGAGGATGAGGAACAGAACGTGCAGAACCTTTTGAAATCAGGCGAAAACGAGGATAATACGCAACAGAACTTGCAGAACCTTTTGAATTCGCAACAGAATCAGAACCCGCAGAACCTTTTGAATTCGCAACAGAACCAGAACCTGCAGAACCTTGTGAATTTGCAACAGAACCAGAACCTGCAGAACCTTGTGAATTTGCAACAGAACCAGGCTGTGTTTGGGCAAAACTTTACCACTGAGGACCTTCTTGCGGCGAAAAAGAAGTTTAAGTTTTGGTGTAAAAAGTGCAAAGTTGGTGCTTATGCTGCAGGCGTGATGGTTGCTCATTTGAATGGGAAGAAACACCAAGCAAATCTTCAACAACCTGATCAAACTTGGACAGGGAGGCCATTTTAG

Protein sequence

MDLRMLLQEKPDPNVFREKRKAEMASTSSDNVQSSYMKKTPKGELSCALCQVTVTNEKVFNEHLHGKKHKRREAGLRAQNASKLFQAAPPEPLSYKRMKLEKTFGSAGAIELKESKDGETLQGEKTEGSFVTNALIPNFLESGDKEDNEQQNQQNQNNNLENLLKSGEKEDDKQENLQNQNQNLQNFLKSDDMEDNKQPNLQNFPKSDDGENNKQQSVHNPNLQNFPKSDDREDNNQQSLHNSNLQNFPKSDDGEDNKQQILHNPNLQNFPKSDDREDNNQQSLHNPNLQNFLNPGEIEDDNKQQNLQSILESGDEEEDEEQNVQNLLKSGENEDNTQQNLQNLLNSQQNQNPQNLLNSQQNQNLQNLVNLQQNQNLQNLVNLQQNQAVFGQNFTTEDLLAAKKKFKFWCKKCKVGAYAAGVMVAHLNGKKHQANLQQPDQTWTGRPF

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh05G010330.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G010330.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..190
None	No IPR available	PFAM	PF12874	zf-met	coord: 408..432 e-value: 0.01 score: 16.2 coord: 46..69 e-value: 4.1E-7 score: 30.2
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 392..441 e-value: 1.7E-6 score: 29.5 coord: 19..74 e-value: 1.8E-9 score: 39.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..225
None	No IPR available	PANTHER	PTHR47487	OS06G0651300 PROTEIN-RELATED	coord: 7..438
None	No IPR available	PANTHER	PTHR47487:SF8	OS06G0651300 PROTEIN	coord: 7..438
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 42..76 e-value: 4.3E-5 score: 32.9 coord: 405..439 e-value: 0.18 score: 18.1
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 406..438
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 38..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G010330	CmaCh05G010330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G010330.1:exon:2672	CmaCh05G010330.1:exon:2672	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G010330.1:cds	CmaCh05G010330.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G010330.1	CmaCh05G010330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding