CmaCh04G022660.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G022660.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 15832541 .. 15833294 (+)
Sequence length471
RNA-Seq ExpressionCmaCh04G022660.1
SyntenyCmaCh04G022660.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACACTCTCAGCCCCATTTTAAAACTGAGCGGCAACTTGCAGAAAAATAAAAAACTGGACGGGCTCGACGCAGTTTGCGGACCAAATTCTTCCAGCAACGATCAAGACTCCATTACAGCAACCATCCACCACCAAATCCCCGAAAAGAGCACAGTGGCCTCAACTCAAATGCGCCACAAAAAAACAAACAAAACAACACCCAGTTCATTTCAATCGCCTCTTTATAATACAATCGATCTTCAAAGTTGAATCGAAAGAGAGAGCTCCCTCCCTTGGCGGTTCGTTTCTCCTCCCTGCTCCATTGCTGTTCTTTAGCAATCGTAAGTAATTCTGCTGTTCTTGTTTTATGTAATCGCCTCGCGTTTTTGATTTTGGGGATTCGTTTCTGTTCATATTCTAGTCAAATTTCGAAGAAATCTGAGGATAATCACCATGTGAGTGTTAGGTGTTTGCTGGTCGCGGAGTTTATTTTATGTCCACATAATCGGGTTCTTATATTAATTTATTGTACTCTGTTTTGGCTGTGCTTGTTTTTTAAACTATAAATTTTTGGACGAATTACAGGCGCGATATAAAAGAGAAACTAAGTGGGGAGCTTCCTCCGTGTCCAAGCATTGCTAGGAATTTCTTGGACGGTTCAATCGGATTTAAGTTGCTTTTTCCAACTCATTTTCAATTGGGTTTCTCGATTACTCTGCGATTCGTTATTTCTAGATTCGAATCATCGAGTGAGGAAGTGAAATTTTGA

mRNA sequence

ATGACCCACACTCTCAGCCCCATTTTAAAACTGAGCGGCAACTTGCAGAAAAATAAAAAACTGGACGGGCTCGACGCAGTTTGCGGACCAAATTCTTCCAGCAACGATCAAGACTCCATTACAGCAACCATCCACCACCAAATCCCCGAAAAGAGCACAGTGGCCTCAACTCAAATGCGCCACAAAAAAACAAACAAAACAACACCCATTGAATCGAAAGAGAGAGCTCCCTCCCTTGGCGGTTCGTTTCTCCTCCCTGCTCCATTGCTGTTCTTTAGCAATCGTAAGCGCGATATAAAAGAGAAACTAAGTGGGGAGCTTCCTCCGTGTCCAAGCATTGCTAGGAATTTCTTGGACGGTTCAATCGGATTTAAGTTGCTTTTTCCAACTCATTTTCAATTGGGTTTCTCGATTACTCTGCGATTCGTTATTTCTAGATTCGAATCATCGAGTGAGGAAGTGAAATTTTGA

Coding sequence (CDS)

ATGACCCACACTCTCAGCCCCATTTTAAAACTGAGCGGCAACTTGCAGAAAAATAAAAAACTGGACGGGCTCGACGCAGTTTGCGGACCAAATTCTTCCAGCAACGATCAAGACTCCATTACAGCAACCATCCACCACCAAATCCCCGAAAAGAGCACAGTGGCCTCAACTCAAATGCGCCACAAAAAAACAAACAAAACAACACCCATTGAATCGAAAGAGAGAGCTCCCTCCCTTGGCGGTTCGTTTCTCCTCCCTGCTCCATTGCTGTTCTTTAGCAATCGTAAGCGCGATATAAAAGAGAAACTAAGTGGGGAGCTTCCTCCGTGTCCAAGCATTGCTAGGAATTTCTTGGACGGTTCAATCGGATTTAAGTTGCTTTTTCCAACTCATTTTCAATTGGGTTTCTCGATTACTCTGCGATTCGTTATTTCTAGATTCGAATCATCGAGTGAGGAAGTGAAATTTTGA

Protein sequence

MTHTLSPILKLSGNLQKNKKLDGLDAVCGPNSSSNDQDSITATIHHQIPEKSTVASTQMRHKKTNKTTPIESKERAPSLGGSFLLPAPLLFFSNRKRDIKEKLSGELPPCPSIARNFLDGSIGFKLLFPTHFQLGFSITLRFVISRFESSSEEVKF
Homology
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BLAST of CmaCh04G022660.1 vs. NCBI nr
Match: KAG6602006.1 (hypothetical protein SDJN03_07239, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45
Identity = 101/136 (74.26%), Postives = 107/136 (78.68%), Query Frame = 0 

Query: 1   MTHTLSPILKLSGNLQKNKKLDGLDAVCGPNSSSNDQDSITATIHHQIPEKSTVASTQMR 60
           +THTLSPILKLSGNLQK +KLDGLDAVCGP SSSNDQDSITATIHHQ PEK TVASTQMR
Sbjct: 16  LTHTLSPILKLSGNLQKKQKLDGLDAVCGPYSSSNDQDSITATIHHQNPEKRTVASTQMR 75

Query: 61  HKKTNKTTPIESKERAPSLGGSFLLPAPLLFFSNRKRDIKEKLSGELPPCPSIARNFLDG 120
           HKKTNKTTP        SL   F+ P   +    + RD KEKLSGELPPC SIARNFLDG
Sbjct: 76  HKKTNKTTP------KSSLPWRFVSPPSSISVLQQSRDTKEKLSGELPPCQSIARNFLDG 135

Query: 121 SIGFKLLFPTHFQLGF 137
           SIGF LLFP HF +GF
Sbjct: 136 SIGFNLLFPFHFPIGF 145

The following BLAST results are available for this feature:
BLAST of CmaCh04G022660.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G022660.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G022660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602006.11.5e-4574.26hypothetical protein SDJN03_07239, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh04G022660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..76

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G022660CmaCh04G022660gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G022660.1:exon:634CmaCh04G022660.1:exon:634exon
CmaCh04G022660.1:exon:635CmaCh04G022660.1:exon:635exon
CmaCh04G022660.1:exon:636CmaCh04G022660.1:exon:636exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G022660.1:cdsCmaCh04G022660.1:cdsCDS
CmaCh04G022660.1:cdsCmaCh04G022660.1:cds_2CDS
CmaCh04G022660.1:cdsCmaCh04G022660.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G022660.1CmaCh04G022660.1-proteinpolypeptide