CmaCh04G014690.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G014690.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 7488410 .. 7488913 (+)
Sequence length	423
RNA-Seq Expression	CmaCh04G014690.1
Synteny	CmaCh04G014690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCTTGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCACGGCGGCGTCGGCGATGAAGGTCCTGGCCGTTATTTGTCTGTGTAATATCGGCGATCTTCTCTTTTGGTTCTTAAACGCAATCTGTTTGTGTGTTCTGCAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGATGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGGTCGGTGTAGTCGAAATCGATAATGGATGGAGGTATCAGTCAACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGGTTGGAGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGGTAA

mRNA sequence

ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCTTGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCACGGCGGCGTCGGCGATGAAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGATGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGGTCGGTGTAGTCGAAATCGATAATGGATGGAGGTATCAGTCAACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGGTTGGAGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGGTAA

Coding sequence (CDS)

ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCTTGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCACGGCGGCGTCGGCGATGAAGCGAACCAGAAGGACATCGTGGAAGCGAACTTGATGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTCCGAAACGGGTCGGTGTAGTCGAAATCGATAATGGATGGAGGTATCAGTCAACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGCTTGGAGGTGATGAGTACGGTTGGAGGTGCAGTTGGGCTTGTTTTTCTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTCTTCTAGTTCGTCATTTTTGGTAA

Protein sequence

MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLVRHFW

Homology

[Close]

BLAST of CmaCh04G014690.1 vs. ExPASy TrEMBL
Match: A0A6J1D9Z1 (uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018723 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39
Identity = 94/131 (71.76%), Postives = 102/131 (77.86%), Query Frame = 0


Query: 14  FYAPSPWRRRP-SDHRRAPRCHGGVG-DEANQKDIVEANLMVLKARMEDLRKKERRIPLP 73
           F +PS WRRRP +DHRRAPRCH GV  DE NQKDIVEANL VL+ RMEDLRKKERRIP  
Sbjct: 15  FRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDLRKKERRIPAS 74

Query: 74  KRVGVVEIDNGWRYQSTRDAKLD----RKVVKNFALISGCLEVMSTVGGAVGLVFLGGSL 133
              G +E DN W Y S  DAKLD    RK+VKNFALIS CLEV+S  GGAVGLV +GGSL
Sbjct: 75  G--GRIEFDNCWSYMSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAVGLVLVGGSL 134

Query: 134 GICLVSLLVRH 139
           GICLVSLL+RH
Sbjct: 135 GICLVSLLIRH 143

[Close]

BLAST of CmaCh04G014690.1 vs. ExPASy TrEMBL
Match: A0A5A7SXL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001490 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.3e-38
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP-- 73
           F+ PS  +RRPSDH  APRCH   GDE N+KDIVEANL VL+ RMEDLRKKERRIP+P  
Sbjct: 13  FHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIP 72

Query: 74  -KRVGVVEIDNGWRYQSTR--DAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLG 133
            ++ G+ E D+G RY S++      D K +KN ALISGCLEV+STVGGAVGLVF+GGSLG
Sbjct: 73  IRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLG 132

Query: 134 ICLVSLLVRHFW 141
           ICLVS +VRHFW
Sbjct: 133 ICLVSFIVRHFW 144

[Close]

BLAST of CmaCh04G014690.1 vs. ExPASy TrEMBL
Match: A0A1S3BFP0 (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.3e-38
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP-- 73
           F+ PS  +RRPSDH  APRCH   GDE N+KDIVEANL VL+ RMEDLRKKERRIP+P  
Sbjct: 13  FHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIP 72

Query: 74  -KRVGVVEIDNGWRYQSTR--DAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLG 133
            ++ G+ E D+G RY S++      D K +KN ALISGCLEV+STVGGAVGLVF+GGSLG
Sbjct: 73  IRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLG 132

Query: 134 ICLVSLLVRHFW 141
           ICLVS +VRHFW
Sbjct: 133 ICLVSFIVRHFW 144

[Close]

BLAST of CmaCh04G014690.1 vs. ExPASy TrEMBL
Match: A0A0A0KRA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.6e-36
Identity = 86/130 (66.15%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 14  FYAPSPWRRRP-SDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP- 73
           F+ PS  RRRP SDHR APRCHG  GDE N+KDIVEANL VL+ RMEDLRKKER IP+  
Sbjct: 12  FHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLRKKERGIPIQI 71

Query: 74  KRVGVVEIDNGWRYQSTRDAK-LDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLGIC 133
           ++ G+ E+D+G RY    D    D K +KN  LISGCLEV+S VGGAVGLVF+GGSLGIC
Sbjct: 72  RQRGMEELDDGGRYLWKLDGGCFDGKKMKNCGLISGCLEVVSRVGGAVGLVFVGGSLGIC 131

Query: 134 LVSLLVRHFW 141
            VS +VRHFW
Sbjct: 132 FVSFIVRHFW 141

[Close]

BLAST of CmaCh04G014690.1 vs. ExPASy TrEMBL
Match: A0A438C1B9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_070691 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 39  DEANQKDIVEANLMVLKARMEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVV 98
           DE    +IV+ANL +L+ R+E+++KKE       R+    + NGW YQ+  D K      
Sbjct: 33  DEGKSANIVDANLRILRERIEEVKKKE-------RLNTCSLQNGWTYQAGYDHK-----H 92

Query: 99  KNFALISGCLEVMSTVGGAVGLVFLGGSLGICLVSLLV 137
           K  A++S  ++++ TV GA+GLVF  GS  ICLVS+LV
Sbjct: 93  KRAAILSESIQLIGTVSGALGLVFFSGSFLICLVSILV 118

[Close]

BLAST of CmaCh04G014690.1 vs. NCBI nr
Match: KAG7032048.1 (hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 3.6e-54
Identity = 112/127 (88.19%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEA---NQKDIVEANLMVLKAR 60
           MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDE    NQKDIVEANL VLKAR
Sbjct: 1   MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKAR 60

Query: 61  MEDLRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVVKNFALISGCLEVMSTVGGA 120
           MEDLRKKERRIPLPKR+G VEIDNGWRY+STRDAKLDRKVVKNFALISGCLEVMST    
Sbjct: 61  MEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKVVKNFALISGCLEVMST---- 120

Query: 121 VGLVFLG 125
            GL F G
Sbjct: 121 -GLCFQG 122

[Close]

BLAST of CmaCh04G014690.1 vs. NCBI nr
Match: KAG6601256.1 (Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 109/127 (85.83%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMED 60
           MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANL VLKARMED
Sbjct: 1   MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLTVLKARMED 60

Query: 61  LRKKERRIPLPKRVGVVEIDNGWRYQSTRDAKLDRKVVKNFALISGCLEVMST---VGGA 120
           LRKKERRIPLPKR+G VEIDNGWRY+STRDAKLD KVVKNFALISGCLE +     VG A
Sbjct: 61  LRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDSKVVKNFALISGCLEFLPASHLVGSA 120

Query: 121 VGLVFLG 125
              V +G
Sbjct: 121 PRTVAVG 127

[Close]

BLAST of CmaCh04G014690.1 vs. NCBI nr
Match: XP_038893300.1 (uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida])

HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48
Identity = 101/132 (76.52%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLPKR 73
           F++P   RRRPSDHRRAPRCHGGVGDE NQKDIV+ANL VL+ARMEDLRKKERRIPLP R
Sbjct: 11  FHSPVSTRRRPSDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDLRKKERRIPLPAR 70

Query: 74  VGVVEIDNGWRYQSTRD-AKLDR----KVVKNFALISGCLEVMSTVGGAVGLVFLGGSLG 133
            G +E DNGWRY S  D AK DR    K++K FALI+GCLEV++TVGGAVGLVF+GGSLG
Sbjct: 71  RGGLEFDNGWRYLSMSDGAKFDRSFDGKILKKFALIAGCLEVVTTVGGAVGLVFVGGSLG 130

Query: 134 ICLVSLLVRHFW 141
           ICLV+LLVRHFW
Sbjct: 131 ICLVALLVRHFW 142

[Close]

BLAST of CmaCh04G014690.1 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-39
Identity = 94/131 (71.76%), Postives = 102/131 (77.86%), Query Frame = 0


Query: 14  FYAPSPWRRRP-SDHRRAPRCHGGVG-DEANQKDIVEANLMVLKARMEDLRKKERRIPLP 73
           F +PS WRRRP +DHRRAPRCH GV  DE NQKDIVEANL VL+ RMEDLRKKERRIP  
Sbjct: 15  FRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDLRKKERRIPAS 74

Query: 74  KRVGVVEIDNGWRYQSTRDAKLD----RKVVKNFALISGCLEVMSTVGGAVGLVFLGGSL 133
              G +E DN W Y S  DAKLD    RK+VKNFALIS CLEV+S  GGAVGLV +GGSL
Sbjct: 75  G--GRIEFDNCWSYMSRSDAKLDRDCERKMVKNFALISECLEVISMAGGAVGLVLVGGSL 134

Query: 134 GICLVSLLVRH 139
           GICLVSLL+RH
Sbjct: 135 GICLVSLLIRH 143

[Close]

BLAST of CmaCh04G014690.1 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 uncharacterized protein E6C27_scaffold65G006220 [Cucumis melo var. makuwa] >TYK09158.1 uncharacterized protein E5676_scaffold475G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-38
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLMVLKARMEDLRKKERRIPLP-- 73
           F+ PS  +RRPSDH  APRCH   GDE N+KDIVEANL VL+ RMEDLRKKERRIP+P  
Sbjct: 13  FHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIP 72

Query: 74  -KRVGVVEIDNGWRYQSTR--DAKLDRKVVKNFALISGCLEVMSTVGGAVGLVFLGGSLG 133
            ++ G+ E D+G RY S++      D K +KN ALISGCLEV+STVGGAVGLVF+GGSLG
Sbjct: 73  IRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLG 132

Query: 134 ICLVSLLVRHFW 141
           ICLVS +VRHFW
Sbjct: 133 ICLVSFIVRHFW 144

The following BLAST results are available for this feature:

BLAST of CmaCh04G014690.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G014690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9Z1	2.0e-39	71.76	uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5A7SXL4	2.3e-38	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFP0	2.3e-38	66.67	uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=...	[more]
A0A0A0KRA6	3.6e-36	66.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1	[more]
A0A438C1B9	2.2e-09	41.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_070691 PE=4 SV=1	[more]

BLAST of CmaCh04G014690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032048.1	3.6e-54	88.19	hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601256.1	1.8e-53	85.83	Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_038893300.1	8.5e-48	76.52	uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]	[more]
XP_022150638.1	4.2e-39	71.76	uncharacterized protein LOC111018723 [Momordica charantia]	[more]
XP_008446686.1	4.7e-38	66.67	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 unc...	[more]

BLAST of CmaCh04G014690.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..64
None	No IPR available	PANTHER	PTHR38225:SF3	SUBFAMILY NOT NAMED	coord: 21..140
None	No IPR available	PANTHER	PTHR38225	PROTEIN, PUTATIVE-RELATED	coord: 21..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G014690	CmaCh04G014690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G014690.1:exon:3812	CmaCh04G014690.1:exon:3812	exon
CmaCh04G014690.1:exon:3813	CmaCh04G014690.1:exon:3813	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G014690.1:cds	CmaCh04G014690.1:cds	CDS
CmaCh04G014690.1:cds	CmaCh04G014690.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G014690.1	CmaCh04G014690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane