CmaCh04G011420.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G011420.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProliferating cell nuclear antigen
LocationCma_Chr04: 5871437 .. 5872257 (+)
Sequence length411
RNA-Seq ExpressionCmaCh04G011420.1
SyntenyCmaCh04G011420.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGCTGAACCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGTATCTTGCAACTGTTAGTTTTGGGTTAGTACAAGATAGATATGGAGTCATCCTGTAACCTGCTGAATTATTCTTAGTTTTATGTTGACCAGTACTTCAGTTGGTCTAGAAAGGAGTTTCACTTTCTTCTTGATATCAGTCGGAAATGACACTAATCGTAGGCTTCATTACTACCTTTTAGATGTTCTTGTGGGCGTCAATGTGAAGAATGGTAAAAACCAATTATTTTTTCTACAATCAATCTACATATGGGAAGCCATTAACAAAACCAATAGTTCATTTTTTGTATTTTTAGTTCAACAATGGTAGTGTGGAGATTGAACCAGCATTCTTTGAGATTGTAATTGCAAATTATAAGCTAAGTTTTTAACAATTTAAATAAAAAAAAGTTTTTAATGGCTTCTTGAAAGGTTACAGCCTGAAGAAGCTGTTATAATAGGGGTGGAAGGACCAGTTAGCTTAACCTTTGCCATGCGGTGTACCTCAACTCTTTTACAAGGCAACCCTCTAGCAAACCAGGTGACGATTAGCATTGTCTTCAGATCCTCCTGTGGTGGTCGAATACAGAATTGAAGAGATGGGTTCTATAGGATACTACTCGACTCCTAAGATCGAAGAAGATGAAGCTGCACCAGAAGCGATTAGCAGACCTGGGCCCCCAAGCATACAACAAAGGCAGAACCTAAAGCAGACTTGA

mRNA sequence

ATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGCTGAACCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGTATCTTGCAACTTACTTCAGTTGGTCTAGAAAGGAGTTTCACTTTCTTCTTGATATCAGTCGGAAATGACACTAATCGTAGGCTTCATTACTACCTTTTAGATGTTCTTGTGGGCGTCAATGTGAAGAATGATCCTCCTGTGGTGGTCGAATACAGAATTGAAGAGATGGGTTCTATAGGATACTACTCGACTCCTAAGATCGAAGAAGATGAAGCTGCACCAGAAGCGATTAGCAGACCTGGGCCCCCAAGCATACAACAAAGGCAGAACCTAAAGCAGACTTGA

Coding sequence (CDS)

ATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGCTGAACCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGTATCTTGCAACTTACTTCAGTTGGTCTAGAAAGGAGTTTCACTTTCTTCTTGATATCAGTCGGAAATGACACTAATCGTAGGCTTCATTACTACCTTTTAGATGTTCTTGTGGGCGTCAATGTGAAGAATGATCCTCCTGTGGTGGTCGAATACAGAATTGAAGAGATGGGTTCTATAGGATACTACTCGACTCCTAAGATCGAAGAAGATGAAGCTGCACCAGAAGCGATTAGCAGACCTGGGCCCCCAAGCATACAACAAAGGCAGAACCTAAAGCAGACTTGA

Protein sequence

MGNKRETCMSLQLVMLNQIVYLLDSWNFAFESGNDLPKLYESILQLTSVGLERSFTFFLISVGNDTNRRLHYYLLDVLVGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDEAAPEAISRPGPPSIQQRQNLKQT
Homology
[Close]
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match: O82134 (Proliferating cell nuclear antigen OS=Pisum sativum OX=3888 GN=PCNA PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 79  VGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDE 114
           V +++ N+ PVVVEY+I EMG + +Y  PKIEEDE
Sbjct: 225 VTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDE 259

[Close]
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match: P22177 (Proliferating cell nuclear antigen (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 79  VGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDE 114
           V +++ N+ PVVVEY+I EMG + +Y  PKIEEDE
Sbjct: 195 VTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDE 229

[Close]
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match: Q43124 (Proliferating cell nuclear antigen OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 79  VGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDE 114
           V +++ ++ PVVVEY++ EMG I YY  PKIEEDE
Sbjct: 225 VTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEDE 259

[Close]
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match: Q9MAY3 (Proliferating cell nuclear antigen OS=Populus nigra OX=3691 GN=PCNA PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 79  VGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDEAAPEA 119
           V +++  D PVVVEY+I EMG + +Y  PK+EEDE  P A
Sbjct: 225 VTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDEPEPGA 264

[Close]
BLAST of CmaCh04G011420.1 vs. TAIR 10
Match: AT1G07370.1 (proliferating cellular nuclear antigen 1 )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 79  VGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDE 114
           V +++ ++ PVVVEY++ EMG I YY  PKIEE+E
Sbjct: 225 VTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEE 259

[Close]
BLAST of CmaCh04G011420.1 vs. TAIR 10
Match: AT2G29570.1 (proliferating cell nuclear antigen 2 )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 75  LDVLVGVNVKNDPPVVVEYRIEEMGSIGYYSTPKIEEDE 114
           L   V +++ ++ PVVVEY++ EMG I YY  PKIEE+E
Sbjct: 221 LSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEE 259

The following BLAST results are available for this feature:
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O821344.4e-0457.14Proliferating cell nuclear antigen OS=Pisum sativum OX=3888 GN=PCNA PE=2 SV=1[more]
P221774.4e-0457.14Proliferating cell nuclear antigen (Fragment) OS=Glycine max OX=3847 PE=2 SV=1[more]
Q431245.8e-0457.14Proliferating cell nuclear antigen OS=Brassica napus OX=3708 PE=2 SV=1[more]
Q9MAY35.8e-0452.50Proliferating cell nuclear antigen OS=Populus nigra OX=3691 GN=PCNA PE=2 SV=1[more]
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011420.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011420.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07370.11.2e-0454.29proliferating cellular nuclear antigen 1 [more]
AT2G29570.11.2e-0451.28proliferating cell nuclear antigen 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..136

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G011420CmaCh04G011420gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G011420.1:exon:4024CmaCh04G011420.1:exon:4024exon
CmaCh04G011420.1:exon:4025CmaCh04G011420.1:exon:4025exon
CmaCh04G011420.1:exon:4026CmaCh04G011420.1:exon:4026exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G011420.1:cdsCmaCh04G011420.1:cdsCDS
CmaCh04G011420.1:cdsCmaCh04G011420.1:cds_2CDS
CmaCh04G011420.1:cdsCmaCh04G011420.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G011420.1CmaCh04G011420.1-proteinpolypeptide