CmaCh04G010990.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G010990.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 5657919 .. 5658993 (-)
Sequence length	222
RNA-Seq Expression	CmaCh04G010990.1
Synteny	CmaCh04G010990.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCCACGCATCTGGAGGTTGGAGAATCAGTTCGTCTGAGTAACTGATGGAGTATCCCTTCTCAAAATTTTCGAGGTGATTCCAACCGCACTAATATTTATTATGATTTTAGAACCTAATTAGTAGATTTGAGAAATTTGAAGGAAGGATAAACATTAATTTCGCAAGAACCAAGCTTTAATTGAGGTAAGTAGCAGTTAATTGGAACATTTATCTAAGTTTTGCGTTGTATTGACTCGAATATGACTTGTTAACGATGGTTGCGGATGAAATATGATTGAGATGATTGATTTTGGCTTATTAGAGCGTGTTAAGTGATTGAACGCATGTCTTTGAAATATGATTAAGATTGCTGATTTTGGCTTATTAGAGTGTGTTAAGTGATTGAACGCATGTCTTTGAAATATGATTGATTAGTTAATCTTGAATAGTGAACCATCTGAACAGCCAATGTTCGCATTTGTATTAGTTGAGTTGGATGATATAGGGTCGTGCCTTGGATGCATATGATATGCAATGCCATCAGGTTATTATGTGGGAACTGTTAGGAGGGTCTCCAACTATCATCTACAATGAACATGTCTCGATTGACAAGGGTCTGCATAGTATTGGAGTAGTTGGCATGCTCGAGGGTCGCTCCTTCACGATTATGACTAAGTGAGGACTGCTAAAGAGTCATCAACTAATCTTTTGTAGGAACTAGATGACAGAGTTCGTATACATCCAAAGTTGGAACAGTTAGGAGGTTGCATCTCACATGTGTGTGCGTTTTAAAACGATAATTAAGAATAGTAGAGAGCATAGCTAGATTATAAATTTTTGAACTAACAAACAACGAAATAAAGGTTCATAGATACAAACTCCATTAAGAACAGAACACAGCCAAACACAAAACCAAGAAAACCAAAAAGGAGAAAAACAATCTCTCCATAAACAACAAGAAAGAAAGGAAAAACCACAAGCCAAGCACCAAGCCAGCCAAAGAGAAGCAAATCACCAAAGCCAACCAGCAACGCCAAAAACCTCCAGAAACGACCTTCAGCTACCAAGGCCACAAGGTTACATATTAA

mRNA sequence

ATGAAATTCCACGCATCTGGAGAACAGAACACAGCCAAACACAAAACCAAGAAAACCAAAAAGGAGAAAAACAATCTCTCCATAAACAACAAGAAAGAAAGGAAAAACCACAAGCCAAGCACCAAGCCAGCCAAAGAGAAGCAAATCACCAAAGCCAACCAGCAACGCCAAAAACCTCCAGAAACGACCTTCAGCTACCAAGGCCACAAGGTTACATATTAA

Coding sequence (CDS)

ATGAAATTCCACGCATCTGGAGAACAGAACACAGCCAAACACAAAACCAAGAAAACCAAAAAGGAGAAAAACAATCTCTCCATAAACAACAAGAAAGAAAGGAAAAACCACAAGCCAAGCACCAAGCCAGCCAAAGAGAAGCAAATCACCAAAGCCAACCAGCAACGCCAAAAACCTCCAGAAACGACCTTCAGCTACCAAGGCCACAAGGTTACATATTAA

Protein sequence

MKFHASGEQNTAKHKTKKTKKEKNNLSINNKKERKNHKPSTKPAKEKQITKANQQRQKPPETTFSYQGHKVTY

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh04G010990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G010990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G010990.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G010990.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G010990	CmaCh04G010990	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G010990.1:exon:4525	CmaCh04G010990.1:exon:4525	exon
CmaCh04G010990.1:exon:4526	CmaCh04G010990.1:exon:4526	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G010990.1:cds	CmaCh04G010990.1:cds_2	CDS
CmaCh04G010990.1:cds	CmaCh04G010990.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G010990.1	CmaCh04G010990.1-protein	polypeptide