CmaCh03G013230.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G013230.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	myb family transcription factor EFM-like
Location	Cma_Chr03: 8530153 .. 8531603 (-)
Sequence length	1122
RNA-Seq Expression	CmaCh03G013230.1
Synteny	CmaCh03G013230.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGGAACTTAAACCCATGGGATAGCATTATTGGATTATTATTCGGTTCCAAAAAAATGGTAATTTCTTACTTTTTTGGCACTAAAAATGTGCATGAATCAGACTCCAAGAATATATAACTCATTACATTATTACAAACAAACGTATGTCCAACAAACTTGTCGATCAATATACTCTCCTTCTCTCTCTCTCTCTGTTCCTCCCTATAAAGATCAGTTGAGGCAATCAATTGGAAGTGAGTTCAGATCTTGGTCTCAAATGGTTTGTATATATTTTACAAAATGAAGATCAAAACCTTTATGCATATCTATGTCTCTCTTTCTGCTGATCTTTTTGGCTTTTCTTGTTTCAGTATCCCAGAAACTTGTTGTTGAATTTTCGAGACCGACGGAGACGGAGTCGGACCGATGAAGGCGGAGCGGAAGAGAAGTTGAATCCATTGACCTCATCAAGAAAGTGGTCATTGTTTGATTTGAACGAGGAGGCCAGGGTTGAAGATGGTGATCATGACATTAGTGTAGAAGTTGAGCAAAATGAAGAAAGAAAGCACGGACGAACTTCATCAAAGCATAATAACAATGAGAATACAAATAACTCATCAAGAGAAGAAGGAAATGGAGGAAGAAGAAGAAGAAGAAGAACAGCAGTGAGGCAGTATGTTAGATCTAAAGTGCCTCGCCTGCGTTGGACTCCTGAGCTTCATCTCAACTTTGTTCATGCCGTTCAAAGGCTCGGTGGCCAAGAGAGTAATAACAATCATTATTCCTTCTTTTCAACTATGTCATAATAAACTTCAATTTGTTATAATAATCTATGATTTTAGGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTAAAAGGACTTAGCATTGCCCATGTCAAAAGCCATTTACAGGTACTCATCTGTTCTTATAATTTGATGAGTTTTTTCGCTCTCAAGAACACTAACTGACCACATAGGACGCATTGAATTTTCAGATGTATAGAAGCAAGAAGCTTGACCAAACAGGGCAAGGTACAAATTAGTAACTGTTCATCATAATTCAATATCATAAAGTAGTTATGCAACTTTGTTTGTTTTTGTCCGTAATAGTTATAGGAGAAGCATGGGCGGGTGGGGTGATGCAAGGAGGTGGGGGATACTACAACAACATCAACAATAAGAATGGCGGCAGGGTGAGCCACCATTATTCTCGCTGGCACTTCCATATCCAGTTTGGAAGGGTTGCAAAACTGTTACCCTCAAACTCACCCTATGATCCAAGGAGTTGTCATGCAAGGACAAGGCAGCTGAGGAGAGAAAATCATTGTTGGGAACCAGAGCTGGAGCTAGGACTGAGGCAGACAACAACAACAGCAACAAAGAGTAGTAGTAGTAGTAGTAGTAGTGATAAAGAGAGTTGGGGATATGGTTTACGGATTACCACTGACCTTTCCCTTTCTTGA

mRNA sequence

TGTGGAACTTAAACCCATGGGATAGCATTATTGGATTATTATTCGGTTCCAAAAAAATGGTAATTTCTTACTTTTTTGGCACTAAAAATGTGCATGAATCAGACTCCAAGAATATATAACTCATTACATTATTACAAACAAACGTATGTCCAACAAACTTGTCGATCAATATACTCTCCTTCTCTCTCTCTCTCTGTTCCTCCCTATAAAGATCAGTTGAGGCAATCAATTGGAAGTGAGTTCAGATCTTGGTCTCAAATGTATCCCAGAAACTTGTTGTTGAATTTTCGAGACCGACGGAGACGGAGTCGGACCGATGAAGGCGGAGCGGAAGAGAAGTTGAATCCATTGACCTCATCAAGAAAGTGGTCATTGTTTGATTTGAACGAGGAGGCCAGGGTTGAAGATGGTGATCATGACATTAGTGTAGAAGTTGAGCAAAATGAAGAAAGAAAGCACGGACGAACTTCATCAAAGCATAATAACAATGAGAATACAAATAACTCATCAAGAGAAGAAGGAAATGGAGGAAGAAGAAGAAGAAGAAGAACAGCAGTGAGGCAGTATGTTAGATCTAAAGTGCCTCGCCTGCGTTGGACTCCTGAGCTTCATCTCAACTTTGTTCATGCCGTTCAAAGGCTCGGTGGCCAAGAGAGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTAAAAGGACTTAGCATTGCCCATGTCAAAAGCCATTTACAGATGTATAGAAGCAAGAAGCTTGACCAAACAGGGCAAGTTATAGGAGAAGCATGGGCGGGTGGGGTGATGCAAGGAGGTGGGGGATACTACAACAACATCAACAATAAGAATGGCGGCAGGGTGAGCCACCATTATTCTCGCTGGCACTTCCATATCCAGTTTGGAAGGGTTGCAAAACTGTTACCCTCAAACTCACCCTATGATCCAAGGAGTTGTCATGCAAGGACAAGGCAGCTGAGGAGAGAAAATCATTGTTGGGAACCAGAGCTGGAGCTAGGACTGAGGCAGACAACAACAACAGCAACAAAGAGTAGTAGTAGTAGTAGTAGTAGTGATAAAGAGAGTTGGGGATATGGTTTACGGATTACCACTGACCTTTCCCTTTCTTGA

Coding sequence (CDS)

ATGTGCATGAATCAGACTCCAAGAATATATAACTCATTACATTATTACAAACAAACGTATGTCCAACAAACTTGTCGATCAATATACTCTCCTTCTCTCTCTCTCTCTGTTCCTCCCTATAAAGATCAGTTGAGGCAATCAATTGGAAGTGAGTTCAGATCTTGGTCTCAAATGTATCCCAGAAACTTGTTGTTGAATTTTCGAGACCGACGGAGACGGAGTCGGACCGATGAAGGCGGAGCGGAAGAGAAGTTGAATCCATTGACCTCATCAAGAAAGTGGTCATTGTTTGATTTGAACGAGGAGGCCAGGGTTGAAGATGGTGATCATGACATTAGTGTAGAAGTTGAGCAAAATGAAGAAAGAAAGCACGGACGAACTTCATCAAAGCATAATAACAATGAGAATACAAATAACTCATCAAGAGAAGAAGGAAATGGAGGAAGAAGAAGAAGAAGAAGAACAGCAGTGAGGCAGTATGTTAGATCTAAAGTGCCTCGCCTGCGTTGGACTCCTGAGCTTCATCTCAACTTTGTTCATGCCGTTCAAAGGCTCGGTGGCCAAGAGAGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTAAAAGGACTTAGCATTGCCCATGTCAAAAGCCATTTACAGATGTATAGAAGCAAGAAGCTTGACCAAACAGGGCAAGTTATAGGAGAAGCATGGGCGGGTGGGGTGATGCAAGGAGGTGGGGGATACTACAACAACATCAACAATAAGAATGGCGGCAGGGTGAGCCACCATTATTCTCGCTGGCACTTCCATATCCAGTTTGGAAGGGTTGCAAAACTGTTACCCTCAAACTCACCCTATGATCCAAGGAGTTGTCATGCAAGGACAAGGCAGCTGAGGAGAGAAAATCATTGTTGGGAACCAGAGCTGGAGCTAGGACTGAGGCAGACAACAACAACAGCAACAAAGAGTAGTAGTAGTAGTAGTAGTAGTGATAAAGAGAGTTGGGGATATGGTTTACGGATTACCACTGACCTTTCCCTTTCTTGA

Protein sequence

MCMNQTPRIYNSLHYYKQTYVQQTCRSIYSPSLSLSVPPYKDQLRQSIGSEFRSWSQMYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVEQNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQGGGGYYNNINNKNGGRVSHHYSRWHFHIQFGRVAKLLPSNSPYDPRSCHARTRQLRRENHCWEPELELGLRQTTTTATKSSSSSSSSDKESWGYGLRITTDLSLS

Homology

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.7e-23
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 145 GNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKG 204
           G+GG    R  AVRQY+RSKVPRLRWT ELH +FV A++ LGGQ++ATPKL+LQLM VKG
Sbjct: 2   GSGGGGCGRNGAVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKG 61

Query: 205 LSIAHVKSHLQMYRSKKLDQTG 227
           L+I+HVKSHLQMYR  +L   G
Sbjct: 62  LTISHVKSHLQMYRCSRLGSHG 83

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-22
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 157 VRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQM 216
           VR YVRS VPRLRWTPELH +FVHAV  LGGQ +ATPKLVL++M+VKGL+I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 217 YRSKKLDQTGQ 228
           YR  ++   G+
Sbjct: 75  YRGSRITLLGK 85

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-19
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 147 GGRRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLS 206
           GG  RR    VRQY RS+VPR+RWT E+H  FV AV+ LGGQ+ ATPK +LQLM VKG+S
Sbjct: 2   GGFERR---GVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVS 61

Query: 207 IAHVKSHLQMYRS 220
           I+H+KSHLQMYRS
Sbjct: 62  ISHIKSHLQMYRS 71

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-17
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 164 KVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLD 223
           + PR+RWT  LH +FVHAVQ LGG ERATPK VL+LMNVK L++AHVKSHLQMYR+ K  
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query: 224 QTG 227
             G
Sbjct: 164 DKG 166

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 164 KVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKK 222
           + PR+RWT  LH  FVHAV+ LGG ERATPK VL+LM+VK L++AHVKSHLQMYR+ K
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy TrEMBL
Match: A0A6J1EDL8 (myb family transcription factor EFM-like OS=Cucurbita moschata OX=3662 GN=LOC111433231 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.7e-143
Identity = 271/288 (94.10%), Postives = 275/288 (95.49%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 117
           MYPRNLLLNFRDRRRRSRTDEG AEEKLNPLTSSRKWSLFDLNEEARVEDGDH+ISVEVE
Sbjct: 1   MYPRNLLLNFRDRRRRSRTDEGVAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 60

Query: 118 QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 177
           QNEERKHGR+S+KHNNNENTNNSSREEGNGG RRRRRTAVRQYVRSKVPRLRWTPELHLN
Sbjct: 61  QNEERKHGRSSTKHNNNENTNNSSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLN 120

Query: 178 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGV 237
           FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGV
Sbjct: 121 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGV 180

Query: 238 MQGGGGYY-NNINNKNGGRVSHHYSRWHFHIQFGRVAKLLPSNSPYDPRSCHARTRQLRR 297
           MQGGGGYY NN NNKNGGRVSHHYSRWHFHIQFG VAKLLPSNSPYDP SCHA+TRQLRR
Sbjct: 181 MQGGGGYYNNNNNNKNGGRVSHHYSRWHFHIQFGSVAKLLPSNSPYDPTSCHAKTRQLRR 240

Query: 298 ENHCWEPELELGLRQTTTTATKSSSSSSSSDKESWGYGLRITTDLSLS 345
            NHCWEPELELGLRQTTTT    S SSSSSDKESWG GLRITTDLSLS
Sbjct: 241 PNHCWEPELELGLRQTTTTT--KSISSSSSDKESWGCGLRITTDLSLS 285

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy TrEMBL
Match: A0A6J1INY7 (probable transcription factor KAN3 OS=Cucurbita maxima OX=3661 GN=LOC111478632 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 7.2e-86
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 117
           MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE
Sbjct: 1   MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 60

Query: 118 QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 177
           QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN
Sbjct: 61  QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 120

Query: 178 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 228
           FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ
Sbjct: 121 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 170

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy TrEMBL
Match: A0A0A0KHW1 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519620 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 171/284 (60.21%), Postives = 197/284 (69.37%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGA-EEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEV 117
           MY  NLLLNFRDRR+RSR+DE GA EEKLN L  SRKWSLFDLNEEA VEDGD     E+
Sbjct: 10  MYCSNLLLNFRDRRKRSRSDESGAVEEKLNALMPSRKWSLFDLNEEASVEDGDEMTIEEI 69

Query: 118 EQNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHL 177
           EQNEERK+  +S+  NNNEN ++++    N G    RRTAVRQYVRSKVPRLRWTPELHL
Sbjct: 70  EQNEERKYENSST--NNNENNSDNNNNNNNNG----RRTAVRQYVRSKVPRLRWTPELHL 129

Query: 178 NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAG- 237
           NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQ+GQVI EA  G 
Sbjct: 130 NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQSGQVIREACDGI 189

Query: 238 --GVMQGGGGYYNNINNKNGG--------RVSHHYSRW-----HFHIQFGRVAKLLPSNS 297
             G+M GGG YYN  +N NGG        + +H YSR      H H QFG +  LL S+S
Sbjct: 190 RMGLMHGGGRYYN--SNSNGGSNMSMLLQQTTHQYSRCYPFTRHLHTQFGTLTTLLHSHS 249

Query: 298 PYDPRSCHARTRQLRRENHCWEPELELGLRQTTTTATKSSSSSS 325
           PY P       RQ+  + + W   L +        +  ++++ S
Sbjct: 250 PYHPT---PPFRQVLEQKNRWSTNLNMRRMNNNNNSNNNNNNGS 282

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy TrEMBL
Match: A0A1S3AZG9 (transcription factor stalky-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484447 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 6.5e-71
Identity = 167/265 (63.02%), Postives = 188/265 (70.94%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGA-EEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEV 117
           MY  NLLLNFRDRR+RSR+DE GA EEKLNPL  SRKWSLFDLNEEA VED D     E+
Sbjct: 10  MYCSNLLLNFRDRRKRSRSDENGAVEEKLNPLMPSRKWSLFDLNEEASVEDDDEMTIEEI 69

Query: 118 EQNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHL 177
           EQNEERK+  +S+  NNNEN +N++    N G    RRTAVRQYVRSKVPRLRWTPELHL
Sbjct: 70  EQNEERKYENSSA--NNNENNSNNNNNNNNNG----RRTAVRQYVRSKVPRLRWTPELHL 129

Query: 178 NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAG- 237
           NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQ+GQVI EA  G 
Sbjct: 130 NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQSGQVIREACDGM 189

Query: 238 --GVMQGGGGYYNNINNKNGG------RVSHHYSRW-----HFHIQFGRVAKLLPSNSPY 297
             G+M GGG YYN+ +N          + +H YSR      H H QFG +  LL  +SPY
Sbjct: 190 RMGLMHGGGRYYNSNSNWGSNMSMLLQQTTHQYSRCYPFTRHLHTQFGTLTTLLHPHSPY 249

Query: 298 DPRSCHARTRQLRRENHCWEPELEL 308
            P       RQ+  + + W   L +
Sbjct: 250 HPT---PPFRQVLEQKNRWSTNLNM 265

[Close]

BLAST of CmaCh03G013230.1 vs. ExPASy TrEMBL
Match: A0A1S3B068 (transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484447 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.4e-70
Identity = 163/242 (67.36%), Postives = 180/242 (74.38%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGA-EEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEV 117
           MY  NLLLNFRDRR+RSR+DE GA EEKLNPL  SRKWSLFDLNEEA VED D     E+
Sbjct: 10  MYCSNLLLNFRDRRKRSRSDENGAVEEKLNPLMPSRKWSLFDLNEEASVEDDDEMTIEEI 69

Query: 118 EQNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHL 177
           EQNEERK+  +S+  NNNEN +N++    N G    RRTAVRQYVRSKVPRLRWTPELHL
Sbjct: 70  EQNEERKYENSSA--NNNENNSNNNNNNNNNG----RRTAVRQYVRSKVPRLRWTPELHL 129

Query: 178 NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAG- 237
           NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQ+GQVI EA  G 
Sbjct: 130 NFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQSGQVIREACDGM 189

Query: 238 --GVMQGGGGYYNNINNKNGG------RVSHHYSRW-----HFHIQFGRVAKLLPSNSPY 285
             G+M GGG YYN+ +N          + +H YSR      H H QFG +  LL  +SPY
Sbjct: 190 RMGLMHGGGRYYNSNSNWGSNMSMLLQQTTHQYSRCYPFTRHLHTQFGTLTTLLHPHSPY 245

[Close]

BLAST of CmaCh03G013230.1 vs. NCBI nr
Match: XP_023543937.1 (uncharacterized protein LOC111803659 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.9 bits (1400), Expect = 1.0e-150
Identity = 292/325 (89.85%), Postives = 300/325 (92.31%), Query Frame = 0


Query: 29  YSPSLSLSVPPYKDQLRQSIGSEFRSWSQMYPRNLLLNFRDRRRRSRTDEG-GAEEKLNP 88
           Y+  LSLSV PYKD LRQSIG+EFRSWSQMYPRNLLLNFRDRRR SRTDEG  AEEKLNP
Sbjct: 9   YTLLLSLSVLPYKDLLRQSIGTEFRSWSQMYPRNLLLNFRDRRRWSRTDEGVAAEEKLNP 68

Query: 89  LTSSRKWSLFDLNEEARVEDGDHDISVEVEQNEERKHGRTSSKHNNNENTNNSSREEGNG 148
           LT SRKWSLFDLNEEARVEDGDH+ISVEVEQ+EERKHG TS+KHNNNENTNNSSREEGNG
Sbjct: 69  LTLSRKWSLFDLNEEARVEDGDHNISVEVEQSEERKHGLTSTKHNNNENTNNSSREEGNG 128

Query: 149 GRRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSI 208
           G RRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSI
Sbjct: 129 G-RRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSI 188

Query: 209 AHVKSHL------QMYRSKKLDQTGQVIGEAWAGGVMQGGGGYYNNINNKNGGRVSHHYS 268
           AHVKSHL      QMYRSKKLDQTGQVIGEAWAGGVMQGGGGY+N  NNKNGGRVSHHYS
Sbjct: 189 AHVKSHLQEALNFQMYRSKKLDQTGQVIGEAWAGGVMQGGGGYHN--NNKNGGRVSHHYS 248

Query: 269 RWHFHIQFGRVAKLLPSNSPYDPRSCHARTRQLRRENHCWEPELELGLRQTTTTATK--S 328
           RWHFHIQFG VAKLLPSNSP+DP SCHA+TRQLRR NHCWEPELELGLRQTTTT TK  S
Sbjct: 249 RWHFHIQFGSVAKLLPSNSPFDPTSCHAKTRQLRRPNHCWEPELELGLRQTTTTTTKSIS 308

Query: 329 SSSSSSSDKESWGYGLRITTDLSLS 345
           SSSSSSSDKESWG GLRITTDLSLS
Sbjct: 309 SSSSSSSDKESWGCGLRITTDLSLS 330

[Close]

BLAST of CmaCh03G013230.1 vs. NCBI nr
Match: XP_022925976.1 (myb family transcription factor EFM-like [Cucurbita moschata])

HSP 1 Score: 517.7 bits (1332), Expect = 7.7e-143
Identity = 271/288 (94.10%), Postives = 275/288 (95.49%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 117
           MYPRNLLLNFRDRRRRSRTDEG AEEKLNPLTSSRKWSLFDLNEEARVEDGDH+ISVEVE
Sbjct: 1   MYPRNLLLNFRDRRRRSRTDEGVAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 60

Query: 118 QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 177
           QNEERKHGR+S+KHNNNENTNNSSREEGNGG RRRRRTAVRQYVRSKVPRLRWTPELHLN
Sbjct: 61  QNEERKHGRSSTKHNNNENTNNSSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLN 120

Query: 178 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGV 237
           FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGV
Sbjct: 121 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGV 180

Query: 238 MQGGGGYY-NNINNKNGGRVSHHYSRWHFHIQFGRVAKLLPSNSPYDPRSCHARTRQLRR 297
           MQGGGGYY NN NNKNGGRVSHHYSRWHFHIQFG VAKLLPSNSPYDP SCHA+TRQLRR
Sbjct: 181 MQGGGGYYNNNNNNKNGGRVSHHYSRWHFHIQFGSVAKLLPSNSPYDPTSCHAKTRQLRR 240

Query: 298 ENHCWEPELELGLRQTTTTATKSSSSSSSSDKESWGYGLRITTDLSLS 345
            NHCWEPELELGLRQTTTT    S SSSSSDKESWG GLRITTDLSLS
Sbjct: 241 PNHCWEPELELGLRQTTTTT--KSISSSSSDKESWGCGLRITTDLSLS 285

[Close]

BLAST of CmaCh03G013230.1 vs. NCBI nr
Match: KAG7034647.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.2 bits (931), Expect = 2.4e-96
Identity = 191/198 (96.46%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 59  YPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVEQ 118
           YPRNLL+NFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDH+ISVEVEQ
Sbjct: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60

Query: 119 NEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNF 178
           NEERKHGR+S+KHNNNENTNNSSREEGNGG RRRRRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLNF 120

Query: 179 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVM 238
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVM
Sbjct: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVM 180

Query: 239 QGGGGYY-NNINNKNGGR 256
           QGGGGYY NN NNKNGGR
Sbjct: 181 QGGGGYYNNNNNNKNGGR 197

[Close]

BLAST of CmaCh03G013230.1 vs. NCBI nr
Match: KAG6581360.1 (Plant cysteine oxidase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-87
Identity = 173/179 (96.65%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 117
           +YPRNLL+NFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDH+ISVEVE
Sbjct: 248 VYPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 307

Query: 118 QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 177
           QNEERKHGR+S+KHNNNENTNNSSREEGNGG RRRRRTAVRQYVRSKVPRLRWTPELHLN
Sbjct: 308 QNEERKHGRSSTKHNNNENTNNSSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLN 367

Query: 178 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGG 237
           FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGG
Sbjct: 368 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGG 425

[Close]

BLAST of CmaCh03G013230.1 vs. NCBI nr
Match: XP_022978771.1 (probable transcription factor KAN3 [Cucurbita maxima])

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-85
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 58  MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 117
           MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE
Sbjct: 1   MYPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVE 60

Query: 118 QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 177
           QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN
Sbjct: 61  QNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLN 120

Query: 178 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 228
           FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ
Sbjct: 121 FVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 170

[Close]

BLAST of CmaCh03G013230.1 vs. TAIR 10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-29
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 115 EVEQNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPEL 174
           E E+ EE + G  S      + ++NS+ EE +      ++T VR YVRSKVPRLRWTP+L
Sbjct: 16  EEEEEEEEEEGEES------KVSSNSTVEESD------KKTKVRPYVRSKVPRLRWTPDL 75

Query: 175 HLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVI 230
           HL FV AV+RLGGQERATPKLV Q+MN+KGLSIAHVKSHLQMYRSKK+D  GQ I
Sbjct: 76  HLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRSKKIDDQGQAI 118

[Close]

BLAST of CmaCh03G013230.1 vs. TAIR 10
Match: AT2G40260.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 9.7e-27
Identity = 75/144 (52.08%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 106 EDGDHDISVEVEQNEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKV 165
           ED D +   E E++EE + G  S   N+ E  + S   + N    ++   +VR Y RSK 
Sbjct: 27  EDKDEEDDEEGEEDEEERSGDQSPSSNSYEEESGSHHHDQN----KKNGGSVRPYNRSKT 86

Query: 166 PRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQT 225
           PRLRWTPELH+ F+ AV+RLGG +RATPKLVLQLMNVKGLSIAHVKSHLQMYRSKK D+ 
Sbjct: 87  PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKTDEP 146

Query: 226 GQVIGEAWAGGVMQGGGGYYNNIN 250
                E   G   + G GY  N++
Sbjct: 147 ----NEGDQGFSFEHGAGYTYNLS 162

[Close]

BLAST of CmaCh03G013230.1 vs. TAIR 10
Match: AT2G42660.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-25
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 132 NNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERA 191
           N  E    ++ EE +     +    VRQY+RS +PRLRWTP+LHL+FV AVQRLGG +RA
Sbjct: 17  NREETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRA 76

Query: 192 TPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 228
           TPKLVL++MN+KGLSIAHVKSHLQMYRSKKL+ + +
Sbjct: 77  TPKLVLEMMNLKGLSIAHVKSHLQMYRSKKLEPSSR 112

[Close]

BLAST of CmaCh03G013230.1 vs. TAIR 10
Match: AT1G14600.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-23
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 157 VRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQM 216
           VR YVRS VPRLRWTPELH +FVHAV  LGGQ +ATPKLVL++M+VKGL+I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 217 YRSKKLDQTGQ 228
           YR  ++   G+
Sbjct: 75  YRGSRITLLGK 85

[Close]

BLAST of CmaCh03G013230.1 vs. TAIR 10
Match: AT2G02060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-22
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 140 SSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQL 199
           SS   GNG     +   VR YVRS VPRLRWTP+LH  FVHAV+ LGGQ RATPKLVL++
Sbjct: 4   SSGRNGNGSFNGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKM 63

Query: 200 MNVKGLSIAHVKSHLQMYR 219
           M+VKGL+I+HVKSHLQMYR
Sbjct: 64  MDVKGLTISHVKSHLQMYR 82

The following BLAST results are available for this feature:

BLAST of CmaCh03G013230.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A3AWH5	3.7e-23	67.07	Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q700D9	5.4e-22	70.42	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37...	[more]
A0A0P0X0C0	3.3e-19	67.12	Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9FJV5	1.4e-17	68.25	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q93WJ9	2.6e-16	68.97	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of CmaCh03G013230.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDL8	3.7e-143	94.10	myb family transcription factor EFM-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1INY7	7.2e-86	100.00	probable transcription factor KAN3 OS=Cucurbita maxima OX=3661 GN=LOC111478632 P...	[more]
A0A0A0KHW1	2.9e-71	60.21	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51962...	[more]
A0A1S3AZG9	6.5e-71	63.02	transcription factor stalky-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A1S3B068	1.4e-70	67.36	transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]

BLAST of CmaCh03G013230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543937.1	1.0e-150	89.85	uncharacterized protein LOC111803659 [Cucurbita pepo subsp. pepo]	[more]
XP_022925976.1	7.7e-143	94.10	myb family transcription factor EFM-like [Cucurbita moschata]	[more]
KAG7034647.1	2.4e-96	96.46	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
KAG6581360.1	2.7e-87	96.65	Plant cysteine oxidase 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022978771.1	1.5e-85	100.00	probable transcription factor KAN3 [Cucurbita maxima]	[more]

BLAST of CmaCh03G013230.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38300.1	2.1e-29	62.61	myb-like HTH transcriptional regulator family protein	[more]
AT2G40260.1	9.7e-27	52.08	Homeodomain-like superfamily protein	[more]
AT2G42660.1	4.1e-25	61.46	Homeodomain-like superfamily protein	[more]
AT1G14600.1	3.8e-23	70.42	Homeodomain-like superfamily protein	[more]
AT2G02060.1	2.5e-22	68.35	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 165..222 e-value: 5.2E-26 score: 92.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..331
None	No IPR available	PANTHER	PTHR31314:SF2	MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN	coord: 114..331
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 166..221 e-value: 4.5E-23 score: 79.3
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 168..218 e-value: 7.1E-8 score: 32.5
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 162..222 score: 13.824917
IPR044848	PHR1-like	PANTHER	PTHR31314	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	coord: 114..331
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 164..220

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G013230	CmaCh03G013230	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013230.1:exon:1058	CmaCh03G013230.1:exon:1058	exon
CmaCh03G013230.1:exon:1057	CmaCh03G013230.1:exon:1057	exon
CmaCh03G013230.1:exon:1056	CmaCh03G013230.1:exon:1056	exon
CmaCh03G013230.1:exon:1055	CmaCh03G013230.1:exon:1055	exon
CmaCh03G013230.1:exon:1054	CmaCh03G013230.1:exon:1054	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013230.1:cds	CmaCh03G013230.1:cds_5	CDS
CmaCh03G013230.1:cds	CmaCh03G013230.1:cds_4	CDS
CmaCh03G013230.1:cds	CmaCh03G013230.1:cds_3	CDS
CmaCh03G013230.1:cds	CmaCh03G013230.1:cds_2	CDS
CmaCh03G013230.1:cds	CmaCh03G013230.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013230.1:five_prime_utr	CmaCh03G013230.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013230.1	CmaCh03G013230.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity