CmaCh03G012130.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G012130.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like
Location	Cma_Chr03: 8066697 .. 8070604 (-)
Sequence length	867
RNA-Seq Expression	CmaCh03G012130.1
Synteny	CmaCh03G012130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGTCTCTTTCCTCCAGTCTCTGTTTCTAGAACACTAGGTCCATCCAAAATCCATGGCGCAAACACACCAACGAGGAGCTAGAAAAATTCAATAATGGCGTTTATGCATCTTCATCATCGCCTTCCATCTCCATCGCTATCATTTCCGGGAGCTTCACCGCCGGTTTACAGATCATCAATCTTCGCATCATCTCGCTTCTCTCCGCCATCAGTTTCATTTCCGTCCCATAAGTTAACTGATTTCACCAACTGCCTTCTTCATCTCCCACCAAAATCTCTGAGTTTCGCGCTCTCTTGGACTCTTGCGCTCGGAGTAGCTCTCTCTGGTAATCATTCTTGCGAATTATCATCGGTTAGATGAAGAAAGAAAAAAGGAATGTTGAGTTCTATCTGAATTGTTTCGAGCTTGAATGTTTAGGTTATATGATTGGTTTTAGATACTCGTTTGTTTATTGAAGTGATTGGCTCTACTCTCTCATAGAAACTTAAGGAATTTTATGAAATGCTAACAGTAATAAGTGAGTGTACCTTGTAGGAGTTGGATTTGCTGACGCCAAAGTTGGGGTTAACAAGCCAGAATTACTTCCCAAGGAGTTCACCTCTGTCATTGATGTCGCTGGGTTTCTATCTGATGGCCAGGTGTGGTTGCTTCGCCTCATTCCTTTTCTTTTTCTTTTTTTCTTTTTGTTGCGTTCCTTGATGTAATTTAGGGTATTTGATCATGATCAAGTAGCCATTGCTGGTTCTGATTTTCTAACAGGAATTTAGGCTCAAACAAGAAATTGCTGACATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCCCAAAATTTTCCTGTGACACCTGGTATGTTCTATGTTTTATCTTCAGCAGATCATTGAACTAATCTCACTTTTAATGGCGAGGACTTTATTATTAAAATTTCAACATACTTTCACTGAATCTTACTAGAAAATTGTATGTGTGATTTATTGACACTTCATAACTTCGAAAGTTTCTCACACACGCATGTCAAGTTTATCAAGTTAGATCGATGATCTCTAATCTAATCGACAGAAACAATCAATTTAATGGTCTTTACAGGGCTAGCGATCAAAGATTTTTGGCAAGTGGATGATAAAACAATCGTGTTCGTTGCTGATCCTACATTTGGTACGAACAATGCCACGGTACTTTTCTACACCTATGTCTATAATGCTATTGACATTGACATTGATTGATATCTTCATTCAGGTAACATATTGAACTTCAACGTTGGAGCGTCTGTCGATTTAGATATTCCAAGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTATGGAAACATATTTTATTGGAAAGAGAAGGTAACATCTCCAACCGATACTTCTGTACAACAGTTACAGTTGCGAGTTTTTGCTTGGTTAGTCAAATATGGTCATAATGAAAGATATCTTATTGAAGATTGTTGGGAGATAGGTCCCACGTCGGCTAATTAAGGGGTTGATCATAGGTTTATAAGTAAGAAATACATCTCTATTGGTATGAGGTTTTTGGGAAACCAAAAGTAAAACGAGGAGAGTTTATACTCAAAGTGGACAATACCACACCATTGTGGAGATTCGTAATTCCTAACACATCTCATATTGTGACTCTGGTGACTTAAACAGGGTGAAGAGGCATCTATTGAAGCAGCTGTCATGGCGATATCTAATTGCTTGAGAGAACCAGTCGGCCCAAATAACTGTTCCGAGATAAAGTAACGGCTTACAACATCGAAGAATTTTGTACGTATTTTAAACTAGATTTGGGTGTTCTGACAGCAATACATAATATATAAGCCTCCTCTTGCTGCAATCTGCATGCCTTAAATGAATTCCTGTTTTGTTCCTCATTCAAGAACGTAGTGTATGTCTAATACTTGAAGAAAAATAAATGGGAATAGTGATTAAAAAGGTATGAAGGAATTTGAGTATTTGTGTAGGCATTTGTTCAACTGTGCAGAAACGAAGAGAAAAAAAGGAGGTGCGTTTTTTAGTTGCCTAGTAGCCAGTTATGATATGAACACTAGATGCAATCCACTCCCCAGTTTTCTGTTTTCTTCTTTCTTCTACAATCTTCTGTAGTTCTTCAGGCGGACAAGGGACTGTTAGAGCTCCCTTTTGTTGGAACCCATATTCTTCCTTTGCCAGCTCCAATAGCCTCAAGAATGCAGGGTTAGACAAGAACTTCAAATTAATGACAAACCTCTTTCTCTCATCACCATCCGCTGCAAATACCACAAAATGGCCTTCTTCCACGTCTTTCGGCACCATAACTGCTGCATCGAATTCTTCGTCGAAACTATCGTGTTTAGGTTCTTTAGACATCAGTGGAGAAAGGCTCTTTTGGAGCATAGAGATGAATAACCTTAGCTTCATCAGGATGAAATTCCGAAGCCTGTAATAATATTTCCCTTTTGTTCCCACGATTTGGCGTGGTAAACAAATGTTTATGTGAACTCGAGACTTCGGATAGAGCCAAGTGAGACTTAGGAGAAGATTTAAATCGAGTTGGGGACGTACATCAGAAATTGCACTGAAGCTTCTGAGAGGGCCATGTCTGAACCATTCCATGTGGGTAGCATCAACATACCATTTAATGCTGACTTGGTCCGATAACTTTTCTGTCTCAGAAAAAATGATAGTCAGCGTTAGGTTCCTAAACAGAAACTAGACAATTTAGGATGAGATTTGATAACTTAGATGTCTGTCTTTAATCTGTGGAAAAAATGAAAAAGAAACACGTTACTTGGCTCAGTAAAGTTGCAAAACTATTGTTCCTCCCCAATAATCCCGTCTTTCTCTAATTATTAGTTTACAGTTCTTGCTCTCAAGATCATAGGCTCATGAACAGTAATTTCACGAACCACTCTGATAAAAGTAGTTGTGTTTTCCCAAAGTTGAGTGGGGAAAGAATTAGAGAAATGAGGAGGATGGGATGCGATTCAGATCAGATGATGAGAATTGTATTCCTTGATCTGATCTGATCTGATCTGATCTTAGAATAGGAATGGGATAGATAGCTGCTGGTTCTTGGTTTCCATTGCCATCACTGCATTTAATGCAGTGTGGAGGAGATATTGAAGAGTCCAATACCCAATGCTTTGAACGACCGACACCCTTCTGTTGACCAAGAAATTTTATCGTTGTCTTGGTCTTACTGTCTTAAGTCTCAAGTTTAACGCAGGGTGTTGAAGATTGGACTGCCGACGCCTAGTCGCCTAGCGTCCCCTGCAGGTTCCAAGAACGGGAAGGTACCATTAAAGTACAGTTTTTAGAAAGAAAGAAATTCCAGGACGTCCATCAGATTGATCTTTGTTTAAAAGGCCAATACTTGTTCAAATTTGTGAGTTTTAACTTTTTTTTTTCTTCAATTGTTGATCTTATGTATTGCTTGTTTAATTTTGTGGAAGGCTTGATTATTGTTTTAAATTAGTGAGTTTGGATATTTTCATTACTTTTTGCTGGTGAATTCAAAGAAAGTGGAAAATAGGATAAAAGTTTTCCATCATCATGTTTGAGATTAGTGTGAAAATTGATACAATTCATTCTCCTTCTATCTTTTTAGACTAGTGTTTCAAAAGGTAAAAAGGTAGGAATCAACAGTGTCACATTCATACTTGTTCAAAGTGTATTGTCTATAATCGCATATAAGTTTCAAAAGGTAAAAAGATAGGGGTGAACAATGTCATGTTCATGCCTATCCAAGGCGTGTTGTCTATAGTTGCATGTGTCCTAGTCATACTTGTCCAAAACGTGTTGTCCATGTAGCATGCCCATTTCATACCCTTTTTACATATTTTCATCTTAGATGGTTTTTTTTTTTTTTTTTTCAGGTTAGGTGAATACGGGTTACATGAAGTTCACCAAAATCATATCTTATAC

mRNA sequence

ACCGTCTCTTTCCTCCAGTCTCTGTTTCTAGAACACTAGGTCCATCCAAAATCCATGGCGCAAACACACCAACGAGGAGCTAGAAAAATTCAATAATGGCGTTTATGCATCTTCATCATCGCCTTCCATCTCCATCGCTATCATTTCCGGGAGCTTCACCGCCGGTTTACAGATCATCAATCTTCGCATCATCTCGCTTCTCTCCGCCATCAGTTTCATTTCCGTCCCATAAGTTAACTGATTTCACCAACTGCCTTCTTCATCTCCCACCAAAATCTCTGAGTTTCGCGCTCTCTTGGACTCTTGCGCTCGGAGTAGCTCTCTCTGGAGTTGGATTTGCTGACGCCAAAGTTGGGGTTAACAAGCCAGAATTACTTCCCAAGGAGTTCACCTCTGTCATTGATGTCGCTGGGTTTCTATCTGATGGCCAGGAATTTAGGCTCAAACAAGAAATTGCTGACATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCCCAAAATTTTCCTGTGACACCTGGGCTAGCGATCAAAGATTTTTGGCAAGTGGATGATAAAACAATCGTGTTCGTTGCTGATCCTACATTTGGTAACATATTGAACTTCAACGTTGGAGCGTCTGTCGATTTAGATATTCCAAGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTATGGAAACATATTTTATTGGAAAGAGAAGGGTGAAGAGGCATCTATTGAAGCAGCTGTCATGGCGATATCTAATTGCTTGAGAGAACCAGTCGGCCCAAATAACTGTTCCGAGATAAAGTAACGGCTTACAACATCGAAGAATTTTGTTAGGTGAATACGGGTTACATGAAGTTCACCAAAATCATATCTTATAC

Coding sequence (CDS)

ATGGCGTTTATGCATCTTCATCATCGCCTTCCATCTCCATCGCTATCATTTCCGGGAGCTTCACCGCCGGTTTACAGATCATCAATCTTCGCATCATCTCGCTTCTCTCCGCCATCAGTTTCATTTCCGTCCCATAAGTTAACTGATTTCACCAACTGCCTTCTTCATCTCCCACCAAAATCTCTGAGTTTCGCGCTCTCTTGGACTCTTGCGCTCGGAGTAGCTCTCTCTGGAGTTGGATTTGCTGACGCCAAAGTTGGGGTTAACAAGCCAGAATTACTTCCCAAGGAGTTCACCTCTGTCATTGATGTCGCTGGGTTTCTATCTGATGGCCAGGAATTTAGGCTCAAACAAGAAATTGCTGACATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCCCAAAATTTTCCTGTGACACCTGGGCTAGCGATCAAAGATTTTTGGCAAGTGGATGATAAAACAATCGTGTTCGTTGCTGATCCTACATTTGGTAACATATTGAACTTCAACGTTGGAGCGTCTGTCGATTTAGATATTCCAAGGAGCTTTTGGAGCCGTTTGGCTGGAAAGTATGGAAACATATTTTATTGGAAAGAGAAGGGTGAAGAGGCATCTATTGAAGCAGCTGTCATGGCGATATCTAATTGCTTGAGAGAACCAGTCGGCCCAAATAACTGTTCCGAGATAAAGTAA

Protein sequence

MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEIADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK

Homology

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BLAST of CmaCh03G012130.1 vs. ExPASy Swiss-Prot
Match: Q9LVV5 (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g52970 PE=1 SV=2)

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-82
Identity = 163/225 (72.44%), Postives = 182/225 (80.89%), Query Frame = 0


Query: 11  PSPSLSFPGASPPVYRSS---IFASSRFSPPSVSFPSHKLTDFTNCLLHLPPKSLSFALS 70
           PS   SF   SP V+  S   + +SSR S  +         D  N +     KSLS   S
Sbjct: 9   PSQCRSF---SPFVFNYSSREVSSSSRLSLKTSG-------DEENWVSRFRSKSLSLVFS 68

Query: 71  WTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEIADIEKDT 130
             LALG++LSGVGFADAKVGVNKPELLPKEFTSVIDVA FLS+GQE R+ QEIA++EKDT
Sbjct: 69  GALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDT 128

Query: 131 GYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIPRSFWS 190
           G+KLRVLAQN+PVTPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWS
Sbjct: 129 GFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWS 188

Query: 191 RLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           RLAGKYGN+FYWKEKGE+ASIEAAVMAIS+CLREPVG NNC+EI+
Sbjct: 189 RLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ 223

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BLAST of CmaCh03G012130.1 vs. ExPASy TrEMBL
Match: A0A6J1IMV5 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478838 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.2e-130
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI
Sbjct: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

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BLAST of CmaCh03G012130.1 vs. ExPASy TrEMBL
Match: A0A6J1EJL7 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433197 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 3.9e-128
Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSFPGASPPVYRSSIFA SRFSPPSVSFPSHK TDFTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFALSRFSPPSVSFPSHKFTDFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI
Sbjct: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEK+TGYKLRVLAQN+PVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKETGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

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BLAST of CmaCh03G012130.1 vs. ExPASy TrEMBL
Match: A0A0A0KH91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446440 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.3e-107
Identity = 199/232 (85.78%), Postives = 210/232 (90.52%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHH LPSPSLSF   SPP+ RS    SSRFSPPS   PS K TDF++ LLHLP K
Sbjct: 1   MAFMHLHHHLPSPSLSFSRPSPPLCRS----SSRFSPPSSPLPSQKYTDFSHRLLHLPQK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSF LS  LALG+ LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RLKQEI
Sbjct: 61  SLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQN+PVTPGLAIKDFWQVDD+TIVFVADPTFGNILNFNVGA+VDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGE++SIE+AVMAIS+CLREPVG NNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEDSSIESAVMAISSCLREPVGANNCSEIK 228

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BLAST of CmaCh03G012130.1 vs. ExPASy TrEMBL
Match: A0A1S3CH24 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500819 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.1e-106
Identity = 197/232 (84.91%), Postives = 209/232 (90.09%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHH LPSPSLSF  +S P+ RS    SSRFSPPS  FPS K TDF + LLHLP K
Sbjct: 1   MAFMHLHHHLPSPSLSFSRSSLPLCRS----SSRFSPPSSPFPSKKYTDFGDRLLHLPQK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
            LSF LS  LALG+ LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RLKQEI
Sbjct: 61  PLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQN+P TPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+VDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNYPATPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGE++SIE+AVMAIS+CLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEDSSIESAVMAISSCLREPVGPNNCSEIK 228

[Close]

BLAST of CmaCh03G012130.1 vs. ExPASy TrEMBL
Match: A0A6J1CRY9 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013734 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.3e-104
Identity = 196/236 (83.05%), Postives = 209/236 (88.56%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFP--GASPPVYRS--SIFASSRFSPPSVSFPSHKLTDFTNCLLH 60
           MA +HLHH LPS S+S P   ASPP+     S+ ASSRFSPPS    +  LT FTN LLH
Sbjct: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60

Query: 61  LPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRL 120
            PPKS SFALS  LALG+ALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RL
Sbjct: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120

Query: 121 KQEIADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGAS 180
           KQEIA+IEKDTGYKLRVLAQN+PVTPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+
Sbjct: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           VDLDIPRSFWSRLAGKYGNIFYWKEKGE+ SIE+AVMAISNCLREPVGPNNCSEIK
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEIK 236

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BLAST of CmaCh03G012130.1 vs. NCBI nr
Match: XP_022979097.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 473.8 bits (1218), Expect = 8.6e-130
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI
Sbjct: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

[Close]

BLAST of CmaCh03G012130.1 vs. NCBI nr
Match: KAG6604403.1 (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 468.0 bits (1203), Expect = 4.7e-128
Identity = 229/232 (98.71%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSF GASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFSGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI
Sbjct: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEK+TGYKLRVLAQN+PVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKETGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

[Close]

BLAST of CmaCh03G012130.1 vs. NCBI nr
Match: KAG7034554.1 (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 467.2 bits (1201), Expect = 8.1e-128
Identity = 228/232 (98.28%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSF GASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFSGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWT+ALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI
Sbjct: 61  SLSFALSWTIALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEK+TGYKLRVLAQN+PVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKETGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

[Close]

BLAST of CmaCh03G012130.1 vs. NCBI nr
Match: XP_022925930.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 467.2 bits (1201), Expect = 8.1e-128
Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSFPGASPPVYRSSIFA SRFSPPSVSFPSHK TDFTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFALSRFSPPSVSFPSHKFTDFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI
Sbjct: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEK+TGYKLRVLAQN+PVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKETGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

[Close]

BLAST of CmaCh03G012130.1 vs. NCBI nr
Match: XP_023543502.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 465.7 bits (1197), Expect = 2.3e-127
Identity = 228/232 (98.28%), Postives = 229/232 (98.71%), Query Frame = 0


Query: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHKLTDFTNCLLHLPPK 60
           MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSH LT FTNCLLHLPPK
Sbjct: 1   MAFMHLHHRLPSPSLSFPGASPPVYRSSIFASSRFSPPSVSFPSHNLTGFTNCLLHLPPK 60

Query: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEI 120
           SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RLKQEI
Sbjct: 61  SLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRLKQEI 120

Query: 121 ADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180
           ADIEKDTGYKLRVLAQN+PVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD
Sbjct: 121 ADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLD 180

Query: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK
Sbjct: 181 IPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 232

[Close]

BLAST of CmaCh03G012130.1 vs. TAIR 10
Match: AT5G52970.1 (thylakoid lumen 15.0 kDa protein )

HSP 1 Score: 307.8 bits (787), Expect = 7.6e-84
Identity = 163/225 (72.44%), Postives = 182/225 (80.89%), Query Frame = 0


Query: 11  PSPSLSFPGASPPVYRSS---IFASSRFSPPSVSFPSHKLTDFTNCLLHLPPKSLSFALS 70
           PS   SF   SP V+  S   + +SSR S  +         D  N +     KSLS   S
Sbjct: 9   PSQCRSF---SPFVFNYSSREVSSSSRLSLKTSG-------DEENWVSRFRSKSLSLVFS 68

Query: 71  WTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRLKQEIADIEKDT 130
             LALG++LSGVGFADAKVGVNKPELLPKEFTSVIDVA FLS+GQE R+ QEIA++EKDT
Sbjct: 69  GALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDT 128

Query: 131 GYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGASVDLDIPRSFWS 190
           G+KLRVLAQN+PVTPGLAIKDFWQVDD TIVFVADPTFGNILNFNVGA+VDLDIPRSFWS
Sbjct: 129 GFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWS 188

Query: 191 RLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEIK 233
           RLAGKYGN+FYWKEKGE+ASIEAAVMAIS+CLREPVG NNC+EI+
Sbjct: 189 RLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVGRNNCAEIQ 223

The following BLAST results are available for this feature:

BLAST of CmaCh03G012130.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVV5	1.1e-82	72.44	Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmaCh03G012130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IMV5	4.2e-130	100.00	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita maxima OX=...	[more]
A0A6J1EJL7	3.9e-128	98.28	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita moschata O...	[more]
A0A0A0KH91	1.3e-107	85.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446440 PE=4 SV=1	[more]
A0A1S3CH24	1.1e-106	84.91	thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1CRY9	2.3e-104	83.05	thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Momordica charantia OX=36...	[more]

BLAST of CmaCh03G012130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979097.1	8.6e-130	100.00	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita maxima]	[more]
KAG6604403.1	4.7e-128	98.71	Thylakoid lumenal 15.0 kDa protein 2, chloroplastic, partial [Cucurbita argyrosp...	[more]
KAG7034554.1	8.1e-128	98.28	Thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucurbita argyrosperma subs...	[more]
XP_022925930.1	8.1e-128	98.28	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543502.1	2.3e-127	98.28	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita pepo subsp. ...	[more]

BLAST of CmaCh03G012130.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52970.1	7.6e-84	72.44	thylakoid lumen 15.0 kDa protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35514	FAMILY NOT NAMED	coord: 43..232

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G012130	CmaCh03G012130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G012130.1:exon:1414	CmaCh03G012130.1:exon:1414	exon
CmaCh03G012130.1:exon:1413	CmaCh03G012130.1:exon:1413	exon
CmaCh03G012130.1:exon:1412	CmaCh03G012130.1:exon:1412	exon
CmaCh03G012130.1:exon:1411	CmaCh03G012130.1:exon:1411	exon
CmaCh03G012130.1:exon:1410	CmaCh03G012130.1:exon:1410	exon
CmaCh03G012130.1:exon:1409	CmaCh03G012130.1:exon:1409	exon
CmaCh03G012130.1:exon:1408	CmaCh03G012130.1:exon:1408	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G012130.1:three_prime_utr	CmaCh03G012130.1:three_prime_utr_2	three_prime_UTR
CmaCh03G012130.1:three_prime_utr	CmaCh03G012130.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G012130.1:cds	CmaCh03G012130.1:cds_6	CDS
CmaCh03G012130.1:cds	CmaCh03G012130.1:cds_5	CDS
CmaCh03G012130.1:cds	CmaCh03G012130.1:cds_4	CDS
CmaCh03G012130.1:cds	CmaCh03G012130.1:cds_3	CDS
CmaCh03G012130.1:cds	CmaCh03G012130.1:cds_2	CDS
CmaCh03G012130.1:cds	CmaCh03G012130.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G012130.1:five_prime_utr	CmaCh03G012130.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G012130.1	CmaCh03G012130.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane