CmaCh03G011790.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G011790.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	AT-hook motif nuclear-localized protein
Location	Cma_Chr03: 7877999 .. 7879218 (-)
Sequence length	705
RNA-Seq Expression	CmaCh03G011790.1
Synteny	CmaCh03G011790.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAGAACACGGCCAACGGTTCTTCCCCTAAGATCTTCGCTTCACTGGAACCAATCATTGAAGAATCACTACTGGAAGATACCTGGAAAAACTCGATGCCAAATTATATGGCGGTGGCTCCGTCGACGCCAATATCAATTATACCGACAACAACCGAAGACTGGGATGCTTTTTTTGCCGCGCCACCGCCGCCTTCTCCAAAACGACTACGAATAAGCAATGACATTCTTGCTTCAATGGGTACGCAAAGATCTTCAGAAAGCTTCATTCTTTCGTGTTTGGTTATATCAAGAACTAAAATTTCTTCAGAAAAGATGGTTCTTTTGAAGGCGAAATAGCTTTGTCCAGCGACAACTTAAAACAAAATATAATCCACATTTACCCCGGCCAGGTAAGAACTACAATCAAATGTTCTTTTCAAATCTTGAACTTTAATCTGAGATCAGATCAAAACTCCAAAAGTGAAAGTAAAGGTAACAATATCGGCTAGCGTGAACTTTAGCAATTATAAATAGTGTCAAAGACAGATATAGAACAATGTGTCAATGAGTAGTCTGAATCCTTAAAAGGGGTGGACACGAGGTGATGTATTAGTAAGATACTGAATCTCGAACGAGTGTCAGGGGTGTTACATTTAATCGGTCTTTTTCTACTTCTATTGGGTATTGCAGGACATTGTGGAAAAAATCATGTCATTCTGTAAAGAGGGTCATCGGGTAGCTACAGTTTTGAGTGCCGATGCCGAAGCGACAGTTTCAAGTGCCACCCTTCGTGGACCTGCAAGCGAAGTCGCGTTGGAGGTAATCAAGGGGCAAATTAAACTCATGAATTTTCTTGGAAAAAGATGAACCAATTTCGATTTTGTGTAGGGTCGGTTCGAAATACTGTCATTAACAGGGAGGTTTGTAGCTAGTGAATGCGAAAGCGCAGGCAACGGTGGAGCAGGAGGCCGCCTTCACTTAACAGTGTCGATGGTTTTGCAGGACGCGAAGGTCATCGGAGGCACTGTCGTTGGTCCATTAATGGCGGCTACACGCATGCATGTTCGTATACATTGTCTATGACATGTTTGAGAATGCTCTGTTTAAAAGCACTTCCATTTGCTACTCATTTTTTGCAGGTTGTGATTGGAACATTGGACCCAGTTCCATATAAACCAAAGGCAGAGATCAATTTAAACATAACACCACCGTCGTCATCATCTTCTAGCTAG

mRNA sequence

ATGGAAGATGAGAACACGGCCAACGGTTCTTCCCCTAAGATCTTCGCTTCACTGGAACCAATCATTGAAGAATCACTACTGGAAGATACCTGGAAAAACTCGATGCCAAATTATATGGCGGTGGCTCCGTCGACGCCAATATCAATTATACCGACAACAACCGAAGACTGGGATGCTTTTTTTGCCGCGCCACCGCCGCCTTCTCCAAAACGACTACGAATAAGCAATGACATTCTTGCTTCAATGGGCGAAATAGCTTTGTCCAGCGACAACTTAAAACAAAATATAATCCACATTTACCCCGGCCAGGACATTGTGGAAAAAATCATGTCATTCTGTAAAGAGGGTCATCGGGTAGCTACAGTTTTGAGTGCCGATGCCGAAGCGACAGTTTCAAGTGCCACCCTTCGTGGACCTGCAAGCGAAGTCGCGTTGGAGGGTCGGTTCGAAATACTGTCATTAACAGGGAGGTTTGTAGCTAGTGAATGCGAAAGCGCAGGCAACGGTGGAGCAGGAGGCCGCCTTCACTTAACAGTGTCGATGGTTTTGCAGGACGCGAAGGTCATCGGAGGCACTGTCGTTGGTCCATTAATGGCGGCTACACGCATGCATGTTGTGATTGGAACATTGGACCCAGTTCCATATAAACCAAAGGCAGAGATCAATTTAAACATAACACCACCGTCGTCATCATCTTCTAGCTAG

Coding sequence (CDS)

ATGGAAGATGAGAACACGGCCAACGGTTCTTCCCCTAAGATCTTCGCTTCACTGGAACCAATCATTGAAGAATCACTACTGGAAGATACCTGGAAAAACTCGATGCCAAATTATATGGCGGTGGCTCCGTCGACGCCAATATCAATTATACCGACAACAACCGAAGACTGGGATGCTTTTTTTGCCGCGCCACCGCCGCCTTCTCCAAAACGACTACGAATAAGCAATGACATTCTTGCTTCAATGGGCGAAATAGCTTTGTCCAGCGACAACTTAAAACAAAATATAATCCACATTTACCCCGGCCAGGACATTGTGGAAAAAATCATGTCATTCTGTAAAGAGGGTCATCGGGTAGCTACAGTTTTGAGTGCCGATGCCGAAGCGACAGTTTCAAGTGCCACCCTTCGTGGACCTGCAAGCGAAGTCGCGTTGGAGGGTCGGTTCGAAATACTGTCATTAACAGGGAGGTTTGTAGCTAGTGAATGCGAAAGCGCAGGCAACGGTGGAGCAGGAGGCCGCCTTCACTTAACAGTGTCGATGGTTTTGCAGGACGCGAAGGTCATCGGAGGCACTGTCGTTGGTCCATTAATGGCGGCTACACGCATGCATGTTGTGATTGGAACATTGGACCCAGTTCCATATAAACCAAAGGCAGAGATCAATTTAAACATAACACCACCGTCGTCATCATCTTCTAGCTAG

Protein sequence

MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAFFAAPPPPSPKRLRISNDILASMGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS

Homology

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BLAST of CmaCh03G011790.1 vs. ExPASy Swiss-Prot
Match: O49658 (AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana OX=3702 GN=AHL2 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-15
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 0


Query: 36  PNYMAVAPSTPISIIPTTTEDWDAFFAAPPPPSPKRLRISNDILASMGEIALSS--DNLK 95
           PN ++ A  T   +I  +T         P  P+P         + ++GE + SS   N  
Sbjct: 92  PNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPSSFIRPKYQVENLGEWSPSSAAANFT 151

Query: 96  QNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGPASE---VALEGRFE 155
            +II +  G+D+ ++I+SF ++G     VL A+    VSS TLR P S    +  EGRFE
Sbjct: 152 PHIITVNAGEDVTKRIISFSQQGSLAICVLCAN--GVVSSVTLRQPDSSGGTLTYEGRFE 211

Query: 156 ILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGT 210
           ILSL+G F+ S+ +   +   G    ++VS+   D +V+GG V G L+AAT + VV+GT
Sbjct: 212 ILSLSGTFMPSDSDGTRSRTGG----MSVSLASPDGRVVGGGVAGLLVAATPIQVVVGT 264

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy Swiss-Prot
Match: Q4V3E0 (AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL7 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 91  NLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGPAS---EVALEG 150
           N   ++I +  G+DI  +I+SF ++G R   +LSA+    +S+ TLR P S    +  EG
Sbjct: 122 NFTPHVITVNTGEDITMRIISFSQQGPRAICILSAN--GVISNVTLRQPDSCGGTLTYEG 181

Query: 151 RFEILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGPLMAATRMHVVI 210
           RFEILSL+G F+  E E+ G+ G  G   ++VS+   D +V+GG V G L+AAT + VV+
Sbjct: 182 RFEILSLSGSFM--ETENQGSKGRSG--GMSVSLAGPDGRVVGGGVAGLLIAATPIQVVV 237

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy Swiss-Prot
Match: O80834 (AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana OX=3702 GN=AHL9 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-13
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 65  PPPSPKRLRISNDILASMGEIALSSDNLK--QNIIHIYPGQDIVEKIMSFCKEGHRVATV 124
           PP S K+ R     +AS+GE+  SS  +    ++I +  G+DI  K+++F ++G R   V
Sbjct: 138 PPGSGKKQR-----MASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICV 197

Query: 125 LSADAEATVSSATLRGPASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTV 184
           LS  A   VS+ATL  P++    +  EGRFEIL+L+  ++ +   S  N       +L+V
Sbjct: 198 LS--ASGAVSTATLIQPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTG----NLSV 257

Query: 185 SMVLQDAKVIGGTVVGPLMAATRMHVVIGT 210
           S+   D +VIGG + GPL+AA+ + V++G+
Sbjct: 258 SLASPDGRVIGGAIGGPLIAASPVQVIVGS 276

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy Swiss-Prot
Match: Q8VYJ2 (AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.9e-13
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 81  SMGEIALSS--DNLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRG 140
           ++GE A  S   N   +II +  G+D+  KI+SF ++G R   VLSA+    +SS TLR 
Sbjct: 157 NLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSAN--GVISSVTLRQ 216

Query: 141 PASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRL-HLTVSMVLQDAKVIGGTVV 200
           P S    +  EGRFEILSL+G F+ ++     +GG   R   ++VS+   D +V+GG + 
Sbjct: 217 PDSSGGTLTYEGRFEILSLSGSFMPND-----SGGTRSRTGGMSVSLASPDGRVVGGGLA 276

Query: 201 GPLMAATRMHVVIGTL----DPVPYKPK 219
           G L+AA+ + VV+G+     D    KPK
Sbjct: 277 GLLVAASPVQVVVGSFLAGTDHQDQKPK 297

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy Swiss-Prot
Match: A1L4X7 (AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AHL14 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-13
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 80  ASMGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGP 139
           + +G +  +      +I++I PG+D+V+KIM F  +      VLS  A  T+S+A+LR P
Sbjct: 159 SQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLS--ASGTISNASLRQP 218

Query: 140 A---SEVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGP 199
           A     +  EG++EILSL+G ++ +E      GG  G   L+VS+   D ++IGG +   
Sbjct: 219 APSGGNLPYEGQYEILSLSGSYIRTE-----QGGKSG--GLSVSLSASDGQIIGGAIGSH 278

Query: 200 LMAATRMHVVIGT 210
           L AA  + V++GT
Sbjct: 279 LTAAGPVQVILGT 282

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy TrEMBL
Match: A0A6J1IHZ3 (AT-hook motif nuclear-localized protein OS=Cucurbita maxima OX=3661 GN=LOC111477635 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122
Identity = 234/239 (97.91%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60
           MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF
Sbjct: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60

Query: 61  FAAPPPPSPKRLRISNDILASM-----GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120
           FAAPPPPSPKRLRISNDILASM     GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE
Sbjct: 61  FAAPPPPSPKRLRISNDILASMDGSFEGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120

Query: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180
           GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL
Sbjct: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180

Query: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 235
           HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS
Sbjct: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 239

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy TrEMBL
Match: A0A6J1ECV5 (AT-hook motif nuclear-localized protein OS=Cucurbita moschata OX=3662 GN=LOC111433025 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.1e-117
Identity = 223/239 (93.31%), Postives = 226/239 (94.56%), Query Frame = 0


Query: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60
           MEDENT NGSSP+IFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF
Sbjct: 1   MEDENTTNGSSPQIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60

Query: 61  FAAPPPPSPKRLRISNDILASM-----GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120
           FAAPPPPSPKRLR S DILASM     GEIA S DNLKQNIIHIYPGQDIVEKIMSFCKE
Sbjct: 61  FAAPPPPSPKRLRTSIDILASMDGSFEGEIAFSGDNLKQNIIHIYPGQDIVEKIMSFCKE 120

Query: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180
           GHRVATVL ADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL
Sbjct: 121 GHRVATVLRADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180

Query: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 235
           HLTVSMVLQDA+VIGGTVVGPL+AATRMHVVIGTLDPVPYKPK EINLNITPPSS SSS
Sbjct: 181 HLTVSMVLQDARVIGGTVVGPLIAATRMHVVIGTLDPVPYKPKTEINLNITPPSSPSSS 239

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy TrEMBL
Match: D5AA24 (AT-hook motif nuclear-localized protein OS=Picea sitchensis OX=3332 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-16
Identity = 69/172 (40.12%), Postives = 98/172 (56.98%), Query Frame = 0


Query: 65  PPPSPKRLRISNDILASMGEIALSSDNL--KQNIIHIYPGQDIVEKIMSFCKEGHRVATV 124
           PP S K+ R     LA++GE  + S  +    ++I I  G+D+  KIMSF ++G R   +
Sbjct: 62  PPGSGKKQR-----LAALGEWVVGSAGIGFTPHVITIAAGEDVASKIMSFSQQGPRAVCI 121

Query: 125 LSADAEATVSSATLRGPASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRL-HLT 184
           LSA+    +S+ TLR PA+    +  EGRFEILSL+G F+ +E     NGGA  R   L+
Sbjct: 122 LSAN--GAISNVTLRQPATSGGTLTYEGRFEILSLSGSFMLTE-----NGGARSRTGGLS 181

Query: 185 VSMVLQDAKVIGGTVVGPLMAATRMHVVIGTL-------DPVPYKPKAEINL 224
           VS+   D +V+GG V G LMAA+ + VV+G+         P P KP+  I L
Sbjct: 182 VSLASPDGRVVGGGVAGMLMAASPVQVVVGSFISNGQKDPPKPAKPEPSIGL 221

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy TrEMBL
Match: A0A068V458 (AT-hook motif nuclear-localized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00043042001 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 61/145 (42.07%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 78  ILASMGEIALSS--DNLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSAT 137
           +LAS+GE+  S+   +   +++++Y G+D+  KI+SF ++G R   VLSA+   TVS+ T
Sbjct: 252 LLASLGELFASTAGGDFTPHVVNVYTGEDVAGKILSFAQKGPRGLCVLSAN--GTVSNVT 311

Query: 138 LRGPASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRL-HLTVSMVLQDAKVIGG 197
           +R P S    +  EGRFEIL+LTG F  SE     NGG   R   L+VS+   D +VIGG
Sbjct: 312 IRQPGSSGGILTYEGRFEILTLTGSFTISE-----NGGIKSRSGGLSVSLAGPDGRVIGG 371

Query: 198 TVVGPLMAATRMHVVIGTLDPVPYK 217
            V G L+AA+ + +V+G+  P  YK
Sbjct: 372 GVAGLLLAASPIQIVVGSFMPNGYK 389

[Close]

BLAST of CmaCh03G011790.1 vs. ExPASy TrEMBL
Match: A0A6P6T3G2 (AT-hook motif nuclear-localized protein OS=Coffea arabica OX=13443 GN=LOC113697437 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 61/145 (42.07%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 78  ILASMGEIALSS--DNLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSAT 137
           +LAS+GE+  S+   +   +++++Y G+D+  KI+SF ++G R   VLSA+   TVS+ T
Sbjct: 154 LLASLGELFASTAGGDFTPHVVNVYTGEDVAGKILSFAQKGPRGLCVLSAN--GTVSNVT 213

Query: 138 LRGPASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRL-HLTVSMVLQDAKVIGG 197
           +R P S    +  EGRFEIL+LTG F  SE     NGG   R   L+VS+   D +VIGG
Sbjct: 214 IRQPGSSGGILTYEGRFEILTLTGSFTISE-----NGGIKSRSGGLSVSLAGPDGRVIGG 273

Query: 198 TVVGPLMAATRMHVVIGTLDPVPYK 217
            V G L+AA+ + +V+G+  P  YK
Sbjct: 274 GVAGLLLAASPIQIVVGSFMPNGYK 291

[Close]

BLAST of CmaCh03G011790.1 vs. NCBI nr
Match: XP_022977267.1 (AT-hook motif nuclear-localized protein 2-like [Cucurbita maxima])

HSP 1 Score: 449.1 bits (1154), Expect = 2.3e-122
Identity = 234/239 (97.91%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60
           MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF
Sbjct: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60

Query: 61  FAAPPPPSPKRLRISNDILASM-----GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120
           FAAPPPPSPKRLRISNDILASM     GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE
Sbjct: 61  FAAPPPPSPKRLRISNDILASMDGSFEGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120

Query: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180
           GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL
Sbjct: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180

Query: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 235
           HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS
Sbjct: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 239

[Close]

BLAST of CmaCh03G011790.1 vs. NCBI nr
Match: KAG6604372.1 (AT-hook motif nuclear-localized protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433.7 bits (1114), Expect = 1.0e-117
Identity = 222/234 (94.87%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60
           MEDENT NGSSP+IFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF
Sbjct: 1   MEDENTTNGSSPQIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60

Query: 61  FAAPPPPSPKRLRISNDILASMGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKEGHRVA 120
           FAAPPPPSPKRLR S DILASMGEIA   DNLKQNIIHIYPGQDIVEKIMSFCKEGHRVA
Sbjct: 61  FAAPPPPSPKRLRTSIDILASMGEIAFPGDNLKQNIIHIYPGQDIVEKIMSFCKEGHRVA 120

Query: 121 TVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTVS 180
           TVL ADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTVS
Sbjct: 121 TVLRADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTVS 180

Query: 181 MVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 235
           MVLQDA+VIGGTVVGPL+AATRMHVVIGTLDPVPYKPK EINLNITPPSS SSS
Sbjct: 181 MVLQDARVIGGTVVGPLIAATRMHVVIGTLDPVPYKPKTEINLNITPPSSPSSS 234

[Close]

BLAST of CmaCh03G011790.1 vs. NCBI nr
Match: XP_022925676.1 (AT-hook motif nuclear-localized protein 2-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 1.9e-116
Identity = 223/239 (93.31%), Postives = 226/239 (94.56%), Query Frame = 0


Query: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60
           MEDENT NGSSP+IFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF
Sbjct: 1   MEDENTTNGSSPQIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60

Query: 61  FAAPPPPSPKRLRISNDILASM-----GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120
           FAAPPPPSPKRLR S DILASM     GEIA S DNLKQNIIHIYPGQDIVEKIMSFCKE
Sbjct: 61  FAAPPPPSPKRLRTSIDILASMDGSFEGEIAFSGDNLKQNIIHIYPGQDIVEKIMSFCKE 120

Query: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180
           GHRVATVL ADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL
Sbjct: 121 GHRVATVLRADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180

Query: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 235
           HLTVSMVLQDA+VIGGTVVGPL+AATRMHVVIGTLDPVPYKPK EINLNITPPSS SSS
Sbjct: 181 HLTVSMVLQDARVIGGTVVGPLIAATRMHVVIGTLDPVPYKPKTEINLNITPPSSPSSS 239

[Close]

BLAST of CmaCh03G011790.1 vs. NCBI nr
Match: XP_023543969.1 (AT-hook motif nuclear-localized protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 218/239 (91.21%), Postives = 225/239 (94.14%), Query Frame = 0


Query: 1   MEDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAF 60
           MEDENT NGSSP+IFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISI+PTTTEDWDAF
Sbjct: 1   MEDENTTNGSSPQIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISILPTTTEDWDAF 60

Query: 61  FAAPPPPSPKRLRISNDILASM-----GEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKE 120
           F APPPPSPKRLR S DILASM     GEIA S DNLKQNIIHIYPGQDIVEKIMSFCKE
Sbjct: 61  FDAPPPPSPKRLRTSIDILASMDGSFEGEIAFSGDNLKQNIIHIYPGQDIVEKIMSFCKE 120

Query: 121 GHRVATVLSADAEATVSSATLRGPASEVALEGRFEILSLTGRFVASECESAGNGGAGGRL 180
           GHRVATVL ADAEATVSSATLRGPASEVALEGRFEILS+TGRFVASECESAGNGGAGGRL
Sbjct: 121 GHRVATVLRADAEATVSSATLRGPASEVALEGRFEILSITGRFVASECESAGNGGAGGRL 180

Query: 181 HLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPVPYKPKAEINLNITPPSSSSSS 235
           HLTVSMVLQDA+VIGGTVVGPL+AATRMHVVIGTLDPVPYKPK EINLN+TPPSS SS+
Sbjct: 181 HLTVSMVLQDARVIGGTVVGPLIAATRMHVVIGTLDPVPYKPKTEINLNMTPPSSPSST 239

[Close]

BLAST of CmaCh03G011790.1 vs. NCBI nr
Match: XP_038882296.1 (AT-hook motif nuclear-localized protein 1-like [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 5.6e-44
Identity = 116/237 (48.95%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 2   EDENTANGSSPKIFASLEPIIEESLLEDTWKNSMPNYMAVAPSTPISIIPTTTEDWDAFF 61
           +D+N  N +SP+  A LE I+E+  L     +   +  +  P+ PIS++P  T    A  
Sbjct: 78  DDQNKINETSPQFKAPLESIMEDRPL----SSMAADLTSAIPAIPISVVPAAT----ARR 137

Query: 62  AAPPPPSPKRLRISNDILASMGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKEGHRVAT 121
               P SP+R R +N ILAS+G IA+S  NL+ + I IY  Q+IV+KI++FCKEGH+ A 
Sbjct: 138 RRGRPASPRRPRTTNPILASLGGIAMSGHNLRPHRITIYRAQNIVDKIVAFCKEGHQGAI 197

Query: 122 VLSADAEATVSSATLRGPAS--EVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTV 181
           VLSA   A +SS TLRG  S  E++LEG FEILSLTGRF+ SE ESA      GRLHLT 
Sbjct: 198 VLSASGGAVISSVTLRGTKSQDEISLEGSFEILSLTGRFIESESESASE--VRGRLHLTT 257

Query: 182 SMVLQDAKVIGGTVVGPLMAATRMHVVIGTLDPV-PYKPKAEI-----NLNITPPSS 231
           S+VLQD  VIGG + GPL+AA+RM +++GT+DP+    P+A++     NLNIT PSS
Sbjct: 258 SLVLQDMSVIGGIITGPLIAASRMSILMGTIDPITSNNPQADMIPLATNLNITEPSS 304

[Close]

BLAST of CmaCh03G011790.1 vs. TAIR 10
Match: AT4G22770.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-16
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 0


Query: 36  PNYMAVAPSTPISIIPTTTEDWDAFFAAPPPPSPKRLRISNDILASMGEIALSS--DNLK 95
           PN ++ A  T   +I  +T         P  P+P         + ++GE + SS   N  
Sbjct: 92  PNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPSSFIRPKYQVENLGEWSPSSAAANFT 151

Query: 96  QNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGPASE---VALEGRFE 155
            +II +  G+D+ ++I+SF ++G     VL A+    VSS TLR P S    +  EGRFE
Sbjct: 152 PHIITVNAGEDVTKRIISFSQQGSLAICVLCAN--GVVSSVTLRQPDSSGGTLTYEGRFE 211

Query: 156 ILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGPLMAATRMHVVIGT 210
           ILSL+G F+ S+ +   +   G    ++VS+   D +V+GG V G L+AAT + VV+GT
Sbjct: 212 ILSLSGTFMPSDSDGTRSRTGG----MSVSLASPDGRVVGGGVAGLLVAATPIQVVVGT 264

[Close]

BLAST of CmaCh03G011790.1 vs. TAIR 10
Match: AT2G45850.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-14
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 65  PPPSPKRLRISNDILASMGEIALSSDNLK--QNIIHIYPGQDIVEKIMSFCKEGHRVATV 124
           PP S K+ R     +AS+GE+  SS  +    ++I +  G+DI  K+++F ++G R   V
Sbjct: 138 PPGSGKKQR-----MASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICV 197

Query: 125 LSADAEATVSSATLRGPASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTV 184
           LS  A   VS+ATL  P++    +  EGRFEIL+L+  ++ +   S  N       +L+V
Sbjct: 198 LS--ASGAVSTATLIQPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTG----NLSV 257

Query: 185 SMVLQDAKVIGGTVVGPLMAATRMHVVIGT 210
           S+   D +VIGG + GPL+AA+ + V++G+
Sbjct: 258 SLASPDGRVIGGAIGGPLIAASPVQVIVGS 276

[Close]

BLAST of CmaCh03G011790.1 vs. TAIR 10
Match: AT2G45850.2 (AT hook motif DNA-binding family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-14
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 65  PPPSPKRLRISNDILASMGEIALSSDNLK--QNIIHIYPGQDIVEKIMSFCKEGHRVATV 124
           PP S K+ R     +AS+GE+  SS  +    ++I +  G+DI  K+++F ++G R   V
Sbjct: 138 PPGSGKKQR-----MASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICV 197

Query: 125 LSADAEATVSSATLRGPASE---VALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTV 184
           LS  A   VS+ATL  P++    +  EGRFEIL+L+  ++ +   S  N       +L+V
Sbjct: 198 LS--ASGAVSTATLIQPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTG----NLSV 257

Query: 185 SMVLQDAKVIGGTVVGPLMAATRMHVVIGT 210
           S+   D +VIGG + GPL+AA+ + V++G+
Sbjct: 258 SLASPDGRVIGGAIGGPLIAASPVQVIVGS 276

[Close]

BLAST of CmaCh03G011790.1 vs. TAIR 10
Match: AT4G00200.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-14
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 91  NLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGPAS---EVALEG 150
           N   ++I +  G+DI  +I+SF ++G R   +LSA+    +S+ TLR P S    +  EG
Sbjct: 122 NFTPHVITVNTGEDITMRIISFSQQGPRAICILSAN--GVISNVTLRQPDSCGGTLTYEG 181

Query: 151 RFEILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGPLMAATRMHVVI 210
           RFEILSL+G F+  E E+ G+ G  G   ++VS+   D +V+GG V G L+AAT + VV+
Sbjct: 182 RFEILSLSGSFM--ETENQGSKGRSG--GMSVSLAGPDGRVVGGGVAGLLIAATPIQVVV 237

[Close]

BLAST of CmaCh03G011790.1 vs. TAIR 10
Match: AT3G04590.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-14
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 80  ASMGEIALSSDNLKQNIIHIYPGQDIVEKIMSFCKEGHRVATVLSADAEATVSSATLRGP 139
           + +G +  +      +I++I PG+D+V+KIM F  +      VLS  A  T+S+A+LR P
Sbjct: 159 SQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLS--ASGTISNASLRQP 218

Query: 140 A---SEVALEGRFEILSLTGRFVASECESAGNGGAGGRLHLTVSMVLQDAKVIGGTVVGP 199
           A     +  EG++EILSL+G ++ +E      GG  G   L+VS+   D ++IGG +   
Sbjct: 219 APSGGNLPYEGQYEILSLSGSYIRTE-----QGGKSG--GLSVSLSASDGQIIGGAIGSH 278

Query: 200 LMAATRMHVVIGT 210
           L AA  + V++GT
Sbjct: 279 LTAAGPVQVILGT 282

The following BLAST results are available for this feature:

BLAST of CmaCh03G011790.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49658	4.3e-15	34.64	AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q4V3E0	1.8e-13	40.98	AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
O80834	1.8e-13	36.00	AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q8VYJ2	6.9e-13	38.51	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
A1L4X7	9.0e-13	35.34	AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]

BLAST of CmaCh03G011790.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHZ3	1.1e-122	97.91	AT-hook motif nuclear-localized protein OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]
A0A6J1ECV5	9.1e-117	93.31	AT-hook motif nuclear-localized protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
D5AA24	5.3e-16	40.12	AT-hook motif nuclear-localized protein OS=Picea sitchensis OX=3332 PE=2 SV=1	[more]
A0A068V458	1.2e-15	42.07	AT-hook motif nuclear-localized protein OS=Coffea canephora OX=49390 GN=GSCOC_T0...	[more]
A0A6P6T3G2	1.2e-15	42.07	AT-hook motif nuclear-localized protein OS=Coffea arabica OX=13443 GN=LOC1136974...	[more]

BLAST of CmaCh03G011790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977267.1	2.3e-122	97.91	AT-hook motif nuclear-localized protein 2-like [Cucurbita maxima]	[more]
KAG6604372.1	1.0e-117	94.87	AT-hook motif nuclear-localized protein 13, partial [Cucurbita argyrosperma subs...	[more]
XP_022925676.1	1.9e-116	93.31	AT-hook motif nuclear-localized protein 2-like [Cucurbita moschata]	[more]
XP_023543969.1	1.3e-114	91.21	AT-hook motif nuclear-localized protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038882296.1	5.6e-44	48.95	AT-hook motif nuclear-localized protein 1-like [Benincasa hispida]	[more]

BLAST of CmaCh03G011790.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22770.1	3.1e-16	34.64	AT hook motif DNA-binding family protein	[more]
AT2G45850.1	1.3e-14	36.00	AT hook motif DNA-binding family protein	[more]
AT2G45850.2	1.3e-14	36.00	AT hook motif DNA-binding family protein	[more]
AT4G00200.1	1.3e-14	40.98	AT hook motif DNA-binding family protein	[more]
AT3G04590.1	6.4e-14	35.34	AT hook motif DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1330.80		coord: 93..227 e-value: 3.5E-20 score: 74.3
None	No IPR available	SUPERFAMILY	117856	AF0104/ALDC/Ptd012-like	coord: 92..216
IPR005175	PPC domain	PFAM	PF03479	PCC	coord: 96..210 e-value: 7.3E-19 score: 68.2
IPR005175	PPC domain	PROSITE	PS51742	PPC	coord: 88..234 score: 24.322031
IPR005175	PPC domain	CDD	cd11378	DUF296	coord: 96..210 e-value: 1.75463E-18 score: 76.085
IPR039605	AT-hook motif nuclear-localized protein	PANTHER	PTHR31500	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	coord: 80..220

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G011790	CmaCh03G011790	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G011790.1:exon:1527	CmaCh03G011790.1:exon:1527	exon
CmaCh03G011790.1:exon:1526	CmaCh03G011790.1:exon:1526	exon
CmaCh03G011790.1:exon:1525	CmaCh03G011790.1:exon:1525	exon
CmaCh03G011790.1:exon:1524	CmaCh03G011790.1:exon:1524	exon
CmaCh03G011790.1:exon:1523	CmaCh03G011790.1:exon:1523	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G011790.1:cds	CmaCh03G011790.1:cds_5	CDS
CmaCh03G011790.1:cds	CmaCh03G011790.1:cds_4	CDS
CmaCh03G011790.1:cds	CmaCh03G011790.1:cds_3	CDS
CmaCh03G011790.1:cds	CmaCh03G011790.1:cds_2	CDS
CmaCh03G011790.1:cds	CmaCh03G011790.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G011790.1	CmaCh03G011790.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding