CmaCh03G010660.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G010660.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 7346117 .. 7346497 (-)
Sequence length	381
RNA-Seq Expression	CmaCh03G010660.1
Synteny	CmaCh03G010660.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGACTCGTCGGAGGAGGTACTGGTTGCGGCGCAGCAGTTGATGCAGCTGAGCATCGAGGATGACGACGACGACGACAACGACGACAACTGTAGTAGCAATGTCGTTGTGGCGGCGGAGAGCAAGAAGAACAAGAAGCTGAAAAAGGGTCACGGCGGCGACCGCGGTGACGGTGGGGAGGAGGAGGTTGATCAGAAGAGATACCAAATTCAGACGTCAATTTGGTTGAAAATCGAAGAGATTTTCGGAAAAGATGAAGAAGATTTCGATTCCATTTGTCGGCCTAAGAAGAGACGATTTCGATCCCTCCAAAGCATATATATCAACACCAAATCCATCGGTAATGGTAGATTTCCGGCAAGTGGATCGTCGTAA

mRNA sequence

ATGGGAGAAGACTCGTCGGAGGAGGTACTGGTTGCGGCGCAGCAGTTGATGCAGCTGAGCATCGAGGATGACGACGACGACGACAACGACGACAACTGTAGTAGCAATGTCGTTGTGGCGGCGGAGAGCAAGAAGAACAAGAAGCTGAAAAAGGGTCACGGCGGCGACCGCGGTGACGGTGGGGAGGAGGAGGTTGATCAGAAGAGATACCAAATTCAGACGTCAATTTGGTTGAAAATCGAAGAGATTTTCGGAAAAGATGAAGAAGATTTCGATTCCATTTGTCGGCCTAAGAAGAGACGATTTCGATCCCTCCAAAGCATATATATCAACACCAAATCCATCGGTAATGGTAGATTTCCGGCAAGTGGATCGTCGTAA

Coding sequence (CDS)

ATGGGAGAAGACTCGTCGGAGGAGGTACTGGTTGCGGCGCAGCAGTTGATGCAGCTGAGCATCGAGGATGACGACGACGACGACAACGACGACAACTGTAGTAGCAATGTCGTTGTGGCGGCGGAGAGCAAGAAGAACAAGAAGCTGAAAAAGGGTCACGGCGGCGACCGCGGTGACGGTGGGGAGGAGGAGGTTGATCAGAAGAGATACCAAATTCAGACGTCAATTTGGTTGAAAATCGAAGAGATTTTCGGAAAAGATGAAGAAGATTTCGATTCCATTTGTCGGCCTAAGAAGAGACGATTTCGATCCCTCCAAAGCATATATATCAACACCAAATCCATCGGTAATGGTAGATTTCCGGCAAGTGGATCGTCGTAA

Protein sequence

MGEDSSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDGGEEEVDQKRYQIQTSIWLKIEEIFGKDEEDFDSICRPKKRRFRSLQSIYINTKSIGNGRFPASGSS

Homology

[Close]

BLAST of CmaCh03G010660.1 vs. ExPASy TrEMBL
Match: A0A6J1GFL5 (uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC111453726 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.7e-50
Identity = 112/129 (86.82%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MGEDSSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDG 60
           MGEDSSEEVLVAAQ LMQLSIEDDDD   DDNCSSNVVVA E  KNKKLKKGHGGDRGDG
Sbjct: 1   MGEDSSEEVLVAAQLLMQLSIEDDDD---DDNCSSNVVVAVEKMKNKKLKKGHGGDRGDG 60

Query: 61  G-EEEVDQKRYQIQTSIWLKIEEIFGKD--EEDFDSICRPKKRRFRSLQSIYINTKSIGN 120
           G EEEVDQKRYQI+TSIWLKIEEIFGKD  E+DF+SICRPKKRRFRSLQSIY+ TK IGN
Sbjct: 61  GEEEEVDQKRYQIETSIWLKIEEIFGKDDEEQDFNSICRPKKRRFRSLQSIYVTTKPIGN 120

Query: 121 GRFPASGSS 127
           GRFPA GSS
Sbjct: 121 GRFPARGSS 126

[Close]

BLAST of CmaCh03G010660.1 vs. ExPASy TrEMBL
Match: A0A6J1BYI0 (uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005872 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 81/131 (61.83%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MGEDSS-----EEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGG 60
           M E+SS     EEVL AAQQLMQLS        N+D+ SSNVV A + K NKK     GG
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLS--------NEDDSSSNVVTAEKKKNNKK----RGG 60

Query: 61  DRGDGGEEEVDQKRYQIQTSIWLKIEEIFGKD----EEDFDSICRPKKR--RFRSLQSIY 120
             GDGGEEEVDQKR QI+ SIW KIEEIFGK+    EED +SICRPKKR  RFRS+QSIY
Sbjct: 61  --GDGGEEEVDQKRCQIEASIWSKIEEIFGKEEEELEEDRNSICRPKKRRSRFRSIQSIY 117

[Close]

BLAST of CmaCh03G010660.1 vs. ExPASy TrEMBL
Match: A0A5A7SLI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00160 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 77/124 (62.10%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 5   SSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDGGEEE 64
           +SEEVL AAQQLMQLS        NDDN SSNV V   +KKNKK     GG    G EEE
Sbjct: 10  NSEEVLGAAQQLMQLS--------NDDN-SSNVDVVVAAKKNKKKDCCGGG----GREEE 69

Query: 65  VDQKRYQIQTSIWLKIEEIFGKDE-----EDFDSI--CRPKKRRFRSLQSIYINTK-SIG 121
           VDQKR QI++SIWLKIEEIFGKDE         SI   RPKKRRFRS+QSIY+ TK  I 
Sbjct: 70  VDQKRCQIESSIWLKIEEIFGKDEGGCCDHHHSSIINSRPKKRRFRSIQSIYMKTKPMIT 120

[Close]

BLAST of CmaCh03G010660.1 vs. ExPASy TrEMBL
Match: A0A0A0KFU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 70/114 (61.40%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 5   SSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDGG--- 64
           +SEEVL AAQQLMQLS        NDDN S+  VV AE+KKNK  KK  GGD G GG   
Sbjct: 10  NSEEVLGAAQQLMQLS--------NDDNSSNVDVVVAEAKKNK--KKDFGGDGGGGGGCR 69

Query: 65  EEEVDQKRYQIQTSIWLKIEEIFGKDEEDFDSIC---------RPKKRRFRSLQ 107
           EEEVDQKR QI++S+WLKIEEIFGKD E  D  C         RPKKRRFRS+Q
Sbjct: 70  EEEVDQKRCQIESSVWLKIEEIFGKDNEG-DHCCHHHSSIINSRPKKRRFRSIQ 112

[Close]

BLAST of CmaCh03G010660.1 vs. ExPASy TrEMBL
Match: A0A6J5XS61 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS37498 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 6   SEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDGGEEEV 65
           +E  L AAQQLMQLS     D+DN++N SS+   ++ S KN      H G       EEV
Sbjct: 16  TESELAAAQQLMQLS-----DEDNNNNSSSSSSNSSRSNKN----TNHEG-------EEV 75

Query: 66  DQKRYQIQTSIWLKIEEIFGKDEEDFDSICRPKKRRFRSLQSIYINTKSIGNG 119
           DQ R  I   IW KIEEIFGK EED D   RPKKRR+RSL SIY+ +K +  G
Sbjct: 76  DQ-RPLINVIIWAKIEEIFGK-EEDVD---RPKKRRYRSLASIYLTSKPVNAG 107

[Close]

BLAST of CmaCh03G010660.1 vs. NCBI nr
Match: KAG6604263.1 (hypothetical protein SDJN03_04872, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.8 bits (538), Expect = 3.3e-51
Identity = 116/129 (89.92%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MGEDSSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDG 60
           MGEDSSEEVLVAAQ LMQLSIEDDDD   DDNCSSNVVVAAE KKNKKLKKGHGGDRGDG
Sbjct: 1   MGEDSSEEVLVAAQLLMQLSIEDDDD---DDNCSSNVVVAAEKKKNKKLKKGHGGDRGDG 60

Query: 61  G-EEEVDQKRYQIQTSIWLKIEEIFGKD--EEDFDSICRPKKRRFRSLQSIYINTKSIGN 120
           G EEEVDQKRYQI+TSIWLKIEEIFGKD  EEDF+SICRPKKRRFRSLQSIYI TK IGN
Sbjct: 61  GEEEEVDQKRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGN 120

Query: 121 GRFPASGSS 127
           GRFPA GSS
Sbjct: 121 GRFPARGSS 126

[Close]

BLAST of CmaCh03G010660.1 vs. NCBI nr
Match: KAG7034419.1 (hypothetical protein SDJN02_04148, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 7.4e-51
Identity = 115/129 (89.15%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MGEDSSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDG 60
           MGEDSSEEVLVAAQ LMQLSIEDDDD   DDNC SNVVVAAE+KKNKKLKKGHGGDRGDG
Sbjct: 1   MGEDSSEEVLVAAQLLMQLSIEDDDD---DDNCGSNVVVAAENKKNKKLKKGHGGDRGDG 60

Query: 61  G-EEEVDQKRYQIQTSIWLKIEEIFGKD--EEDFDSICRPKKRRFRSLQSIYINTKSIGN 120
           G EEEVDQKRYQI+TSIWLKIEEIFGKD  EEDF+SICRPKKRRFRSLQSIYI TK IGN
Sbjct: 61  GEEEEVDQKRYQIETSIWLKIEEIFGKDDEEEDFNSICRPKKRRFRSLQSIYITTKPIGN 120

Query: 121 GRFPASGSS 127
           GRFPA GSS
Sbjct: 121 GRFPARGSS 126

[Close]

BLAST of CmaCh03G010660.1 vs. NCBI nr
Match: XP_022950712.1 (uncharacterized protein LOC111453726 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 112/129 (86.82%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MGEDSSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDG 60
           MGEDSSEEVLVAAQ LMQLSIEDDDD   DDNCSSNVVVA E  KNKKLKKGHGGDRGDG
Sbjct: 1   MGEDSSEEVLVAAQLLMQLSIEDDDD---DDNCSSNVVVAVEKMKNKKLKKGHGGDRGDG 60

Query: 61  G-EEEVDQKRYQIQTSIWLKIEEIFGKD--EEDFDSICRPKKRRFRSLQSIYINTKSIGN 120
           G EEEVDQKRYQI+TSIWLKIEEIFGKD  E+DF+SICRPKKRRFRSLQSIY+ TK IGN
Sbjct: 61  GEEEEVDQKRYQIETSIWLKIEEIFGKDDEEQDFNSICRPKKRRFRSLQSIYVTTKPIGN 120

Query: 121 GRFPASGSS 127
           GRFPA GSS
Sbjct: 121 GRFPARGSS 126

[Close]

BLAST of CmaCh03G010660.1 vs. NCBI nr
Match: XP_031742655.1 (uncharacterized protein LOC116404425 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-25
Identity = 80/128 (62.50%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 5   SSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDGG--- 64
           +SEEVL AAQQLMQLS        NDDN S+  VV AE+KKNK  KK  GGD G GG   
Sbjct: 10  NSEEVLGAAQQLMQLS--------NDDNSSNVDVVVAEAKKNK--KKDFGGDGGGGGGCR 69

Query: 65  EEEVDQKRYQIQTSIWLKIEEIFGKDEEDFDSIC---------RPKKRRFRSLQSIYINT 121
           EEEVDQKR QI++S+WLKIEEIFGKD E  D  C         RPKKRRFRS+QSIY+ T
Sbjct: 70  EEEVDQKRCQIESSVWLKIEEIFGKDNEG-DHCCHHHSSIINSRPKKRRFRSIQSIYMKT 126

[Close]

BLAST of CmaCh03G010660.1 vs. NCBI nr
Match: KAG6595108.1 (hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 76/125 (60.80%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 5   SSEEVLVAAQQLMQLSIEDDDDDDNDDNCSSNVVVAAESKKNKKLKKGHGGDRGDGG-EE 64
           +SEEVL AAQQL+QLS EDD         SS+ VV AE+KK KK+ K      GDGG EE
Sbjct: 11  NSEEVLDAAQQLVQLSNEDD---------SSSNVVTAENKKKKKIMKKKEDGGGDGGEEE 70

Query: 65  EVDQKRYQIQTSIWLKIEEIFGKDEEDFD----SICRPKKRRFRSLQSIYINTKSIGNGR 124
           EVDQKR QI+TSI  KIEEIFGKD++D +    SICRP KRRFRS+QSIY+NTK + N R
Sbjct: 71  EVDQKRCQIETSICSKIEEIFGKDDDDDEEGCGSICRPNKRRFRSIQSIYMNTKPLVNAR 126

The following BLAST results are available for this feature:

BLAST of CmaCh03G010660.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G010660.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFL5	6.7e-50	86.82	uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC1114537...	[more]
A0A6J1BYI0	2.9e-24	61.83	uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7SLI9	1.9e-20	62.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFU1	2.1e-19	61.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1	[more]
A0A6J5XS61	1.4e-10	50.44	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS37498 PE=...	[more]

BLAST of CmaCh03G010660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604263.1	3.3e-51	89.92	hypothetical protein SDJN03_04872, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034419.1	7.4e-51	89.15	hypothetical protein SDJN02_04148, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022950712.1	1.4e-49	86.82	uncharacterized protein LOC111453726 [Cucurbita moschata]	[more]
XP_031742655.1	7.0e-25	62.50	uncharacterized protein LOC116404425 [Cucumis sativus]	[more]
KAG6595108.1	2.6e-24	60.80	hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh03G010660.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G010660	CmaCh03G010660	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G010660.1:exon:85	CmaCh03G010660.1:exon:85	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G010660.1:cds	CmaCh03G010660.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G010660.1	CmaCh03G010660.1-protein	polypeptide