CmaCh03G007550.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G007550.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Late embryogenesis abundant protein
Location	Cma_Chr03: 5943107 .. 5946123 (-)
Sequence length	1166
RNA-Seq Expression	CmaCh03G007550.1
Synteny	CmaCh03G007550.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATATTAAACGATTCTTCCACTTAACTTCAAAAGCAAATATGATAAATGCAATCAGATTCGGCCGCAGTCCACCGCCAATCGTGCTCACATTACCTCTTCCGCCGCAGCTCCGCCGTGAGCTCCGATCCCGTCAACTGATCGGTTTTTCCACCGCTCCTGATCAGAACCCACAGAACATGGATGACTCTAAGAGCACTGCCAAGCAGACTGAGTTAGATCTTTCTCGTTTCTGTGTGCATAGGCCAGTTTATGGGGCATGTTAAAAGGTTAATTTTTTTGAAATGTGTGTGAAAGCAGAGATCTAATGACTGATTCGTTTGGGGACGCGTATGCGAGCCGAAGCGAGGAAGAAGGATTTGGAGGGATTTATAGATCGATTGAGTCAACCGAAGAGGGGGCTGAGAATGAAAAGAAATCTGGTAATTAAATTCTTATGCATTTTCCTTAATTAAATGATGATGATGATTAGTGTGTTTAATTACTATGTTGTTTGAATTGTGTTTTGAAGAATATGATAAAAGCCAAGGGAGCGAAGTGAAGGAGAAGGAGAAGGCTCGACATCAAACTCACTCCAACTGCTAAGAGCAACGATGTTGTCTGATACTCGTTTGTATTATGTCTGGTGTTTTTCGTCGTCATGTTGTTCTCGTGAGAAGTTAGTTTGTATAAAATCTAAATTTGTATTTTGTAAATTAATTGGAACAATACTGGATGTGATGATAAGGGGTTGGGCGAAAGGATTACCTTATCTCTTGCTTTCTTCGTTCTTCCTTCCATCTCCGACAAGATGGATCACCTGTTTGAAATTATTGGTCTAGTCAACTTCTTTTTCAAATAAAGTTCTAGTCTTTATGGAGTTTCACTCGTTCTGTTGATATTTTTTAGATATTTTTATGTTCAACAACTTTATCGGATATGTATTTTTTGTGAAGGATATGTATTTATCGTTGTTGATATTTCTTTTTGTAATGGCTAGACATTAGTCACCATGCTTAAAATTAATAAAAGAATTGTTTATGTTCTCTGCTAAGGGTGCCCCTAACCCTAGTTAGGGGTGTACGTGGGTCAGGTTCTAGCTAGGAGTGTAGATGGATCGAGTTGGGTCGATGTGAGGGTACTTGTAGGACCAATTCTCACTTTGGGTTAATTCGAATATATTTAGGTTTTGAAGGTAATTTAACTGGTATGTAAATCAACTTAATCCAGCCCAGTACTTAAAAGAATTGTTTAGGTTCTCTGCTAAGGGTTCCCCTAACTAGGGTCGGGTGTACGTGGATCGGGTTCTAGCTAGGAGTGTATATGGATTGAGTTGGGTCGGTGTGAGGGTACTTTTACACCTTGGGTTGATTCGAATATATTTGGATTCTGAAGGGTATGTTAATTGGATTGATTCGATGTACACTCCTTATTTGGGCTGTTGCCCATTACTTAAAAAGATACATAAACATCTTTGTTATAAGCCGTACATATCCGAATATTTAATTCGAGAAGAAACGATATTGGATAATCGTTGATGACGTGGCAAGCATAAGGTCGTTTAGGTCGCTGGTTTGAATACCGTCGGATTTATTTTTCTTAAATAAAAAATTAGAGAAATAGCTCCATATTCATAGATGTATGTTTGAATCTCTTTAAAAATAAATAATGAATACAAATTAATAAAAAAACCTCACCCATCCAGATGGAGGACTGTAGCGTGGCAGGTCGGATTTTTTTTTTTTTTTTTTTGTAATTATTATTTTTGTTTATATATTAATTTTTTTACATTTTATCTATCATTAAACAATGAACATTCACGGGATATCGCCACGCAGGACTACGTGTCAAGTTTACACTACAGTGCAAGAAAGTGTGGGTACGTCGACGCCACGCAAGATTTCAACTGTGTGAAAGTCACACACGTGTCATACTTACTCCACGTGTCACATTTACAATGTGAAAATTTTCCAAATGTAGCGTTCATCAAGTTGGGGAAGATTTCCACCTATTCTTCCACTTATCTTCAGAAGCAAATATGATAAATGCAATCAGATTCGGCCGCAGTCCACCGCCGATCGTGCTCACATTACCTCTTCCGCCGCAGCTCCGCCGTGTAGACTCGCCTGAGCTCCGATCCCGTCAACTGATCGGTTTCTCCACCGCACCTGATCAGAACCCACGGAACATGGATGACTCTAAAAACACTGCCAAGCAGACTGGGTTAGATCCTTCTCGTTTCTGGTTGCATGGGTCAATTTATGGGGCCGTTTTAAAAGGTTAATTTTGTTAAAATGTGTGTAAAATCAGAGATATAATGACTGATTCGTTCGGGCAAGCGTACGCATGCCGAAGCGAGTATGAAGGATTTGGAGGGATTTATAGATGGATTGAGTCAACCGAAGTGGGGGCTGAGAATGAAAAGAAACCTGGTAATTAAATTCTTATGCATTTTCCTTAATTAAATGATGATGATGATGATTAGTGTTTTAATTACTGTTTTGTTTGAATTATGTTTTGAAGAATATGATAAAAGCCAAGGGAGCGAAGTGAAGGAGGAGGAGAAGGAGAAGGAGAATGAGAAGGCTCGACATCAAACTCACTCCAACTGCTAAGAACAATGATCTTGTCTCATACTCGTTTTGTATTATGTTTATGGTTCTTCTTTGTCATGTTGTTGTCTTAGTTGGTATAAAATCTAAATTTGCATTTTGTAAATTAATTAGAAGAATATTGGGCGTGATGATAAGGGATTGGACCACCCCATTGTGTGTCGGAATGTACATGGTTGAAGTTGCACGTATTCGAAGTCTCGCTGAAAGGGGTGTACATGGTTCGGGTTCGGGGAGGGTCAGAGTCAGCCAGTACCAATTCAAAACCACTGAATCCCAAGTTTTGTCCAACCCCAAAACCCAAAACGAATATATTCCGATTCTAATGCTAATTTAACTCAACCCAATCTCTATGGGTCGGGTCGGGTTCCATCTTGGTTGGACCAATTCAAAAGTTAGTATTTCCACTGAATCCCAAGTTTTGTCC

mRNA sequence

TGATATTAAACGATTCTTCCACTTAACTTCAAAAGCAAATATGATAAATGCAATCAGATTCGGCCGCAGTCCACCGCCAATCGTGCTCACATTACCTCTTCCGCCGCAGCTCCGCCGTGAGCTCCGATCCCGTCAACTGATCGGTTTTTCCACCGCTCCTGATCAGAACCCACAGAACATGGATGACTCTAAGAGCACTGCCAAGCAGACTGAAGATCTAATGACTGATTCGTTTGGGGACGCGTATGCGAGCCGAAGCGAGGAAGAAGGATTTGGAGGGATTTATAGATCGATTGAGTCAACCGAAGAGGGGGCTGAGAATGAAAAGAAATCTGAAGCAAATATGATAAATGCAATCAGATTCGGCCGCAGTCCACCGCCGATCGTGCTCACATTACCTCTTCCGCCGCAGCTCCGCCGTGTAGACTCGCCTGAGCTCCGATCCCGTCAACTGATCGGTTTCTCCACCGCACCTGATCAGAACCCACGGAACATGGATGACTCTAAAAACACTGCCAAGCAGACTGGAGATATAATGACTGATTCGTTCGGGCAAGCGTACGCATGCCGAAGCGAGTATGAAGGATTTGGAGGGATTTATAGATGGATTGAGTCAACCGAAGTGGGGGCTGAGAATGAAAAGAAACCTGAATATGATAAAAGCCAAGGGAGCGAAGTGAAGGAGGAGGAGAAGGAGAAGGAGAATGAGAAGGCTCGACATCAAACTCACTCCAACTGCTAAGAACAATGATCTTGTCTCATACTCGTTTTGTATTATGTTTATGGTTCTTCTTTGTCATGTTGTTGTCTTAGTTGGTATAAAATCTAAATTTGCATTTTGTAAATTAATTAGAAGAATATTGGGCGTGATGATAAGGGATTGGACCACCCCATTGTGTGTCGGAATGTACATGGTTGAAGTTGCACGTATTCGAAGTCTCGCTGAAAGGGGTGTACATGGTTCGGGTTCGGGGAGGGTCAGAGTCAGCCAGTACCAATTCAAAACCACTGAATCCCAAGTTTTGTCCAACCCCAAAACCCAAAACGAATATATTCCGATTCTAATGCTAATTTAACTCAACCCAATCTCTATGGGTCGGGTCGGGTTCCATCTTGGTTGGACCAATTCAAAAGTTAGTATTTCCACTGAATCCCAAGTTTTGTCC

Coding sequence (CDS)

ATGATAAATGCAATCAGATTCGGCCGCAGTCCACCGCCAATCGTGCTCACATTACCTCTTCCGCCGCAGCTCCGCCGTGAGCTCCGATCCCGTCAACTGATCGGTTTTTCCACCGCTCCTGATCAGAACCCACAGAACATGGATGACTCTAAGAGCACTGCCAAGCAGACTGAAGATCTAATGACTGATTCGTTTGGGGACGCGTATGCGAGCCGAAGCGAGGAAGAAGGATTTGGAGGGATTTATAGATCGATTGAGTCAACCGAAGAGGGGGCTGAGAATGAAAAGAAATCTGAAGCAAATATGATAAATGCAATCAGATTCGGCCGCAGTCCACCGCCGATCGTGCTCACATTACCTCTTCCGCCGCAGCTCCGCCGTGTAGACTCGCCTGAGCTCCGATCCCGTCAACTGATCGGTTTCTCCACCGCACCTGATCAGAACCCACGGAACATGGATGACTCTAAAAACACTGCCAAGCAGACTGGAGATATAATGACTGATTCGTTCGGGCAAGCGTACGCATGCCGAAGCGAGTATGAAGGATTTGGAGGGATTTATAGATGGATTGAGTCAACCGAAGTGGGGGCTGAGAATGAAAAGAAACCTGAATATGATAAAAGCCAAGGGAGCGAAGTGAAGGAGGAGGAGAAGGAGAAGGAGAATGAGAAGGCTCGACATCAAACTCACTCCAACTGCTAA

Protein sequence

MINAIRFGRSPPPIVLTLPLPPQLRRELRSRQLIGFSTAPDQNPQNMDDSKSTAKQTEDLMTDSFGDAYASRSEEEGFGGIYRSIESTEEGAENEKKSEANMINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQTGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKENEKARHQTHSNC

Homology

[Close]

BLAST of CmaCh03G007550.1 vs. ExPASy TrEMBL
Match: A0A6J1IUE6 (uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 7.3e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE
Sbjct: 61  TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 120

Query: 222 NEKARHQTHSNC 234
           NEKARHQTHSNC
Sbjct: 121 NEKARHQTHSNC 132

[Close]

BLAST of CmaCh03G007550.1 vs. ExPASy TrEMBL
Match: A0A6J1GES9 (uncharacterized protein LOC111453509 OS=Cucurbita moschata OX=3662 GN=LOC111453509 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 113/132 (85.61%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MIN+IRFGR PPPIVLTLPLPP+LRR+DSPELRSRQLIGFSTAPDQN  NMDDSKNT KQ
Sbjct: 1   MINSIRFGRVPPPIVLTLPLPPRLRRIDSPELRSRQLIGFSTAPDQNQENMDDSKNTDKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           +GDIMTDSFG AYACRSEYEGFGGIYRWI+STE GAENEKK EYDKSQGSEVKE+     
Sbjct: 61  SGDIMTDSFGLAYACRSEYEGFGGIYRWIKSTEEGAENEKKREYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKARHQTHSNC
Sbjct: 121 -EKARHQTHSNC 126

[Close]

BLAST of CmaCh03G007550.1 vs. ExPASy TrEMBL
Match: A0A6J1GEP8 (uncharacterized protein LOC111453508 OS=Cucurbita moschata OX=3662 GN=LOC111453508 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.6e-49
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MINA+RFGRSPPPIVLTLPLPPQLRR+D PELRSRQ IGFSTAPDQ P+NMDDSK+TAKQ
Sbjct: 1   MINAVRFGRSPPPIVLTLPLPPQLRRIDLPELRSRQRIGFSTAPDQTPQNMDDSKSTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           T D+MTDSFG AYA RSE EGFGGIYR +ESTE GAENEKKPEYDKSQGSEVKE+     
Sbjct: 61  TEDLMTDSFGHAYASRSEEEGFGGIYRSVESTEEGAENEKKPEYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKA HQT SNC
Sbjct: 121 -EKAGHQTQSNC 126

[Close]

BLAST of CmaCh03G007550.1 vs. ExPASy TrEMBL
Match: A0A6J1IN44 (uncharacterized protein LOC111478521 OS=Cucurbita maxima OX=3661 GN=LOC111478521 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 111/132 (84.09%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MINAIRFGRSPPPIVLTLPLPPQLRR    ELRSRQLIGFSTAPDQNP+NMDDSK+TAKQ
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRR----ELRSRQLIGFSTAPDQNPQNMDDSKSTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           T D+MTDSFG AYA RSE EGFGGIYR IESTE GAENEKK EYDKSQGSEVKE+     
Sbjct: 61  TEDLMTDSFGDAYASRSEEEGFGGIYRSIESTEEGAENEKKSEYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKARHQTHSNC
Sbjct: 121 -EKARHQTHSNC 122

[Close]

BLAST of CmaCh03G007550.1 vs. ExPASy TrEMBL
Match: A0A0A0KGG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 87/138 (63.04%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPR--NMDDSKNTA 161
           MINAIRFGR+PPPIVLT PLPP+LRR+ SPEL SRQ I F+TAPD+NP+   MDDS+N  
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 162 KQTGDIMTDSFGQAYACRSEYEGFGGIYRW-IESTEVGAENEKKP----EYDKSQGSEVK 221
           K+TGDIM DSFG+ YA RSE EGFGG Y    +S +      KKP    EYDKSQGSEVK
Sbjct: 61  KETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQHEYDKSQGSEVK 120

Query: 222 EEEKEKENEKARHQTHSN 233
           E+      EK+RHQ H+N
Sbjct: 121 EK------EKSRHQAHAN 132

[Close]

BLAST of CmaCh03G007550.1 vs. NCBI nr
Match: XP_022978574.1 (uncharacterized protein LOC111478513 [Cucurbita maxima])

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE
Sbjct: 61  TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 120

Query: 222 NEKARHQTHSNC 234
           NEKARHQTHSNC
Sbjct: 121 NEKARHQTHSNC 132

[Close]

BLAST of CmaCh03G007550.1 vs. NCBI nr
Match: XP_023543426.1 (uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-56
Identity = 117/132 (88.64%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MINAIRFGRSPPPIVLTLPLPPQLRR+D+PELRSRQ IGFSTAPDQNP+NMDDSKNTAKQ
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRRIDAPELRSRQRIGFSTAPDQNPQNMDDSKNTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           TGDIMTDSFG AYACRSEYEGFGGIYRWI+STE GAENEKK EYDKSQGSEVKE+     
Sbjct: 61  TGDIMTDSFGLAYACRSEYEGFGGIYRWIKSTEEGAENEKKREYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKARHQTHSNC
Sbjct: 121 -EKARHQTHSNC 126

[Close]

BLAST of CmaCh03G007550.1 vs. NCBI nr
Match: XP_022950398.1 (uncharacterized protein LOC111453509 [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-53
Identity = 113/132 (85.61%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MIN+IRFGR PPPIVLTLPLPP+LRR+DSPELRSRQLIGFSTAPDQN  NMDDSKNT KQ
Sbjct: 1   MINSIRFGRVPPPIVLTLPLPPRLRRIDSPELRSRQLIGFSTAPDQNQENMDDSKNTDKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           +GDIMTDSFG AYACRSEYEGFGGIYRWI+STE GAENEKK EYDKSQGSEVKE+     
Sbjct: 61  SGDIMTDSFGLAYACRSEYEGFGGIYRWIKSTEEGAENEKKREYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKARHQTHSNC
Sbjct: 121 -EKARHQTHSNC 126

[Close]

BLAST of CmaCh03G007550.1 vs. NCBI nr
Match: XP_023543425.1 (uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-50
Identity = 109/132 (82.58%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           M+NAIRF RSPPPIVLTLPLPPQLRR+D PELRSRQLI FSTAPDQNP+NMDDSKNTAKQ
Sbjct: 1   MMNAIRFARSPPPIVLTLPLPPQLRRIDLPELRSRQLISFSTAPDQNPQNMDDSKNTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           T D+MTDSFG AYA RSE EGFGGIYR +EST+ GAENEKKPEYDKSQGSEVKE+     
Sbjct: 61  TEDLMTDSFGHAYASRSEEEGFGGIYRSVESTDEGAENEKKPEYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKARHQ HSNC
Sbjct: 121 -EKARHQAHSNC 126

[Close]

BLAST of CmaCh03G007550.1 vs. NCBI nr
Match: XP_022950397.1 (uncharacterized protein LOC111453508 [Cucurbita moschata])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-49
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDSKNTAKQ 161
           MINA+RFGRSPPPIVLTLPLPPQLRR+D PELRSRQ IGFSTAPDQ P+NMDDSK+TAKQ
Sbjct: 1   MINAVRFGRSPPPIVLTLPLPPQLRRIDLPELRSRQRIGFSTAPDQTPQNMDDSKSTAKQ 60

Query: 162 TGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAENEKKPEYDKSQGSEVKEEEKEKE 221
           T D+MTDSFG AYA RSE EGFGGIYR +ESTE GAENEKKPEYDKSQGSEVKE+     
Sbjct: 61  TEDLMTDSFGHAYASRSEEEGFGGIYRSVESTEEGAENEKKPEYDKSQGSEVKEK----- 120

Query: 222 NEKARHQTHSNC 234
            EKA HQT SNC
Sbjct: 121 -EKAGHQTQSNC 126

[Close]

BLAST of CmaCh03G007550.1 vs. TAIR 10
Match: AT5G66780.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-13
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 102 MINAIRFGRSPPPIVLTLPLPPQLRRVDSPELRSRQLIGFSTAPDQNPRNMDDS-KNTAK 161
           MINA +  RS       LP    +    +P    R++ G S A   + + MD   +N  +
Sbjct: 1   MINAFKTIRS-------LPSNTTVSFCSTPSRLGRKVTGVSFATTSDQQKMDKKPENPNE 60

Query: 162 QTGDIMTDSFGQAYACRSEYEGFGGIYRWIESTEVGAE-NEKKPEYDKSQGSEVKEEEKE 221
           +TGD+M+ S+G+ YA RS+ EGFGGIY   ++ +   E +E  P+YDK+QGSE       
Sbjct: 61  KTGDVMSHSYGEGYATRSDEEGFGGIYGGNQTLQKENEIHENHPDYDKTQGSE------S 120

Query: 222 KENEKARHQTHSNC 234
           KE EKAR+QT S+C
Sbjct: 121 KEKEKARNQTQSHC 121

The following BLAST results are available for this feature:

BLAST of CmaCh03G007550.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G007550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IUE6	7.3e-66	100.00	uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513...	[more]
A0A6J1GES9	1.1e-53	85.61	uncharacterized protein LOC111453509 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1GEP8	1.6e-49	81.82	uncharacterized protein LOC111453508 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1IN44	1.4e-48	84.09	uncharacterized protein LOC111478521 OS=Cucurbita maxima OX=3661 GN=LOC111478521...	[more]
A0A0A0KGG3	1.1e-32	63.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1	[more]

BLAST of CmaCh03G007550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978574.1	1.5e-65	100.00	uncharacterized protein LOC111478513 [Cucurbita maxima]	[more]
XP_023543426.1	4.8e-56	88.64	uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo]	[more]
XP_022950398.1	2.2e-53	85.61	uncharacterized protein LOC111453509 [Cucurbita moschata]	[more]
XP_023543425.1	2.3e-50	82.58	uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo]	[more]
XP_022950397.1	3.4e-49	81.82	uncharacterized protein LOC111453508 [Cucurbita moschata]	[more]

BLAST of CmaCh03G007550.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66780.1	4.1e-13	39.55	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..164
None	No IPR available	PANTHER	PTHR36410:SF1	EXPRESSED PROTEIN	coord: 102..230
None	No IPR available	PANTHER	PTHR36410	EXPRESSED PROTEIN	coord: 1..96 coord: 102..230
None	No IPR available	PANTHER	PTHR36410:SF1	EXPRESSED PROTEIN	coord: 1..96

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G007550	CmaCh03G007550	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G007550.1:exon:357	CmaCh03G007550.1:exon:357	exon
CmaCh03G007550.1:exon:356	CmaCh03G007550.1:exon:356	exon
CmaCh03G007550.1:exon:355	CmaCh03G007550.1:exon:355	exon
CmaCh03G007550.1:exon:354	CmaCh03G007550.1:exon:354	exon
CmaCh03G007550.1:exon:353	CmaCh03G007550.1:exon:353	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G007550.1:three_prime_utr	CmaCh03G007550.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G007550.1:cds	CmaCh03G007550.1:cds_5	CDS
CmaCh03G007550.1:cds	CmaCh03G007550.1:cds_4	CDS
CmaCh03G007550.1:cds	CmaCh03G007550.1:cds_3	CDS
CmaCh03G007550.1:cds	CmaCh03G007550.1:cds_2	CDS
CmaCh03G007550.1:cds	CmaCh03G007550.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G007550.1:five_prime_utr	CmaCh03G007550.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G007550.1	CmaCh03G007550.1-protein	polypeptide