CmaCh03G004390.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G004390.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Actin-depolymerizing factor
Location	Cma_Chr03: 4594431 .. 4596142 (-)
Sequence length	631
RNA-Seq Expression	CmaCh03G004390.1
Synteny	CmaCh03G004390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGCTCATCATCGTTTCCAACAGGGTTTTTGCAGTTTACACCAACACGATACGCTCCTCTGTTATTTGAATCACTGCCCACCATAATTACCATTCCCAACCACCCAATATAACCTTTCCCCCGCATTCACTCATTCATTCCTCTCTTCTCTTCATTCTTCGATTTCACTGTTGTTTGAGTTCTTCCGCAAGCATCCAAGGAGAGAAAATGGTAACACTTCGATTCATTTGCTTCATTTTTGGCTTCCCAAGTGTTTGATTAAATGACCTGTTCTGTTTCTGGGGAAGTTCTGGGAAATTGCTGGAATGGGTTTCTGGGAAATGTGGTTTTGTTGATTAGCTTCTCTTTTGGTTCTATTTGGTGTTTGATCTGTGGTTCTGACTTGACTGGAATTATTTGAATGTGTTTGGATTGGGTTGATTTATAATAATAGTTCATGAATTGTTTTGGTGTGTAATGTTTTGTTCTGAGATCTTGGGATATGATCTGGTTTGTGTTGGAATGATTTTATGTTTGTAACTATTGGATGGTTTAGTTTTATGATCGGTCGAGCTAGAGAATTTCCATCTGGTTCTGTATCCATTGCTCTTATCTAAATTATCTCTTGTGATGAACAGGGGTCCTCCTTTTAGTATTTTACTTCTCCCCTCCCCCCTTTAGATTCAATCCTCCTTTCAAAGTTGTATGGAGTTTTGTTGTTGCAATGAGCACTCAGTAGATATTCTCTGTTTTGACTCGTTACATATTTTTGTCAGTCTTGTTAGGGAAAGGTTTCCACACTCTTATAAGAATGCTTTCTTTCCCTTTCTAACCTATCACAATCCACACCCTTATGTATTGCGATATGTAATGGGCTAAAGCGGATAATATCTATTGGCGGTGGGCTTGAGTTGTTACATGAAGTGTATGTGTTTTGGGTGTCAATCAACCTTCTATGCGTAACGGGCTAAACCGGATAATATCTACTAGCAGTGGGCTGAAGTTGTTGCTAGTGTGTTTTGAGTGTCAATCAATCTTCTTACCTATAGGTAATGGGTGGGCTTGAGTTAGAATTGTTACATGAATGTGTGTGTTTTGTGTGACAGTCAACCTTCTCTTTTATTGCAAAATCTTGTCTTCAAGTTAGAGGATACTTTAAAAGGTGATCAAATATTACAAACTTAGCTTAGTTCTTACAACCCAAAATATGTTCATAAAAATATACTTTCATGAATCTGGTAGGCCAATGCAGCATCAGGAATGGCTGTGAATGATGAATGCAAGTTAAAGTTTCTAGAGCTCAAGACAAAAAGAACTCATCGTTTCATTATCTTTAAGATCGAGGAGAAGCTAAAGCAAGTAGTTGTGGAGAAACTTGGTGGGCCTAGCCAAAGTTACGAGGATTTTGCTGCTAGTCTTCCTACCGATGAGTGTCGTTATGCTGTCTATGATTTCGACTTTGTCACGGAAGAAAATTGCCAAAAAAGCAGAATCTTCTTCATTGCATGGTAATGACAATTCTTAACCATTCAATGATTGCATACTTCATCTTATCACTGATTGAATTGTTAAATGAAGGTCTCCTGATAATTCAAGAGTCAGAAGCAAGATGATCTATGCAAGCTCCAAGGACAGATTTAAGAGAGAGCTTGATGGAATACAAGTGGAGCTGCAAGCAACCGATCCGACCGAGATGGGTCTCGACGTAATTCGAAGCCGTGCTGGAATATAA

mRNA sequence

GAAGCTCATCATCGTTTCCAACAGGGTTTTTGCAGTTTACACCAACACGATACGCTCCTCTGTTATTTGAATCACTGCCCACCATAATTACCATTCCCAACCACCCAATATAACCTTTCCCCCGCATTCACTCATTCATTCCTCTCTTCTCTTCATTCTTCGATTTCACTGTTGTTTGAGTTCTTCCGCAAGCATCCAAGGAGAGAAAATGGCCAATGCAGCATCAGGAATGGCTGTGAATGATGAATGCAAGTTAAAGTTTCTAGAGCTCAAGACAAAAAGAACTCATCGTTTCATTATCTTTAAGATCGAGGAGAAGCTAAAGCAAGTAGTTGTGGAGAAACTTGGTGGGCCTAGCCAAAGTTACGAGGATTTTGCTGCTAGTCTTCCTACCGATGAGTGTCGTTATGCTGTCTATGATTTCGACTTTGTCACGGAAGAAAATTGCCAAAAAAGCAGAATCTTCTTCATTGCATGGTCTCCTGATAATTCAAGAGTCAGAAGCAAGATGATCTATGCAAGCTCCAAGGACAGATTTAAGAGAGAGCTTGATGGAATACAAGTGGAGCTGCAAGCAACCGATCCGACCGAGATGGGTCTCGACGTAATTCGAAGCCGTGCTGGAATATAA

Coding sequence (CDS)

ATGGCCAATGCAGCATCAGGAATGGCTGTGAATGATGAATGCAAGTTAAAGTTTCTAGAGCTCAAGACAAAAAGAACTCATCGTTTCATTATCTTTAAGATCGAGGAGAAGCTAAAGCAAGTAGTTGTGGAGAAACTTGGTGGGCCTAGCCAAAGTTACGAGGATTTTGCTGCTAGTCTTCCTACCGATGAGTGTCGTTATGCTGTCTATGATTTCGACTTTGTCACGGAAGAAAATTGCCAAAAAAGCAGAATCTTCTTCATTGCATGGTCTCCTGATAATTCAAGAGTCAGAAGCAAGATGATCTATGCAAGCTCCAAGGACAGATTTAAGAGAGAGCTTGATGGAATACAAGTGGAGCTGCAAGCAACCGATCCGACCGAGATGGGTCTCGACGTAATTCGAAGCCGTGCTGGAATATAA

Protein sequence

MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASLPTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVIRSRAGI

Homology

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy Swiss-Prot
Match: Q9FVI2 (Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.7e-64
Identity = 119/138 (86.23%), Postives = 130/138 (94.20%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKL+FLELK KRTHRFI++KIEEK KQVVVEK+G P++SYEDFAASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P +ECRYAVYDFDFVT ENCQKSRIFFIAW PD +RVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQA DPTEMGLDVI+SRA
Sbjct: 121 LQACDPTEMGLDVIQSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy Swiss-Prot
Match: Q9FVI1 (Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.8e-64
Identity = 120/139 (86.33%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKLKFLELK KRT+RFII+KIEEK K+VVVEKLG P++SYEDF A L
Sbjct: 1   MANAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDF+T+EN QKSRIFFIAWSPD +RVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRAG 140
           LQATDPTEMGLDV RSRAG
Sbjct: 121 LQATDPTEMGLDVFRSRAG 139

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy Swiss-Prot
Match: Q0DLA3 (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 PE=3 SV=2)

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-62
Identity = 116/138 (84.06%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+DECKLKFLELK KRT+RFII+KI+EK K VVVEK+G P  +Y+DFAASL
Sbjct: 1   MANAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P +ECRYA++D+DFVTEENCQKS+IFFIAWSPD SRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTE+GLDVIR RA
Sbjct: 121 LQATDPTEVGLDVIRGRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy Swiss-Prot
Match: Q39250 (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 8.2e-62
Identity = 115/138 (83.33%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKL+FLELK KRTHRFI++KIEEK KQVVVEK+G P Q+YE+FAA L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYA+YDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEM LDV RSRA
Sbjct: 121 LQATDPTEMDLDVFRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy Swiss-Prot
Match: Q9ZSK3 (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-61
Identity = 113/137 (82.48%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKL+FLELK KRTHRFI++KIEEK KQV+VEK+G P  +YEDFAASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYA+YDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSR 138
           LQATDPTEM LDV++SR
Sbjct: 121 LQATDPTEMDLDVLKSR 137

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy TrEMBL
Match: A0A6J1IRV5 (actin-depolymerizing factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478768 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRAGI 141
           LQATDPTEMGLDVIRSRAGI
Sbjct: 121 LQATDPTEMGLDVIRSRAGI 140

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy TrEMBL
Match: A0A6J1GD54 (actin-depolymerizing factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453110 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRAGI 141
           LQATDPTEMGLDVIRSRAGI
Sbjct: 121 LQATDPTEMGLDVIRSRAGI 140

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy TrEMBL
Match: A0A6J1I5N8 (actin-depolymerizing factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471251 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.5e-69
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFI+FKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIVFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSK+RFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKERFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEMGLDVIRSRA
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy TrEMBL
Match: A0A6J1HFY8 (actin-depolymerizing factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111463208 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.5e-69
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSK+RFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKERFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEMGLD+IRSRA
Sbjct: 121 LQATDPTEMGLDIIRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. ExPASy TrEMBL
Match: A0A0A0KX62 (ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G294380 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.7e-68
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFI+FKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIVFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P +ECRYAVYDFDFVTEENCQKSRIFFIAWSPD+S+VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PANECRYAVYDFDFVTEENCQKSRIFFIAWSPDDSKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEMGLDVIRSRA
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. NCBI nr
Match: XP_022978980.1 (actin-depolymerizing factor 1-like [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 8.4e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRAGI 141
           LQATDPTEMGLDVIRSRAGI
Sbjct: 121 LQATDPTEMGLDVIRSRAGI 140

[Close]

BLAST of CmaCh03G004390.1 vs. NCBI nr
Match: XP_022949831.1 (actin-depolymerizing factor 1-like [Cucurbita moschata] >XP_023543253.1 actin-depolymerizing factor 1-like [Cucurbita pepo subsp. pepo] >KAG6603669.1 Actin-depolymerizing factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033848.1 Actin-depolymerizing factor 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRAGI 141
           LQATDPTEMGLDVIRSRAGI
Sbjct: 121 LQATDPTEMGLDVIRSRAGI 140

[Close]

BLAST of CmaCh03G004390.1 vs. NCBI nr
Match: XP_038881189.1 (actin-depolymerizing factor 1-like isoform X3 [Benincasa hispida] >XP_038881190.1 actin-depolymerizing factor 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFI+FKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIVFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEMGLDVIRSRA
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. NCBI nr
Match: XP_022972737.1 (actin-depolymerizing factor 1-like [Cucurbita maxima] >XP_023517168.1 actin-depolymerizing factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 5.1e-69
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFI+FKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIVFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSK+RFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKERFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEMGLDVIRSRA
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. NCBI nr
Match: XP_022962833.1 (actin-depolymerizing factor 1-like [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 5.1e-69
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAVNDECKLKFLELK+KRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL
Sbjct: 1   MANAASGMAVNDECKLKFLELKSKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSK+RFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKERFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEMGLD+IRSRA
Sbjct: 121 LQATDPTEMGLDIIRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. TAIR 10
Match: AT3G46010.1 (actin depolymerizing factor 1 )

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-63
Identity = 115/138 (83.33%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKL+FLELK KRTHRFI++KIEEK KQVVVEK+G P Q+YE+FAA L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYA+YDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEM LDV RSRA
Sbjct: 121 LQATDPTEMDLDVFRSRA 138

[Close]

BLAST of CmaCh03G004390.1 vs. TAIR 10
Match: AT3G46010.2 (actin depolymerizing factor 1 )

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-62
Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 2   ANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASLP 61
           ANAASGMAV+D+CKL+FLELK KRTHRFI++KIEEK KQVVVEK+G P Q+YE+FAA LP
Sbjct: 13  ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP 72

Query: 62  TDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVEL 121
            DECRYA+YDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 73  ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVEL 132

Query: 122 QATDPTEMGLDVIRSRA 139
           QATDPTEM LDV RSRA
Sbjct: 133 QATDPTEMDLDVFRSRA 149

[Close]

BLAST of CmaCh03G004390.1 vs. TAIR 10
Match: AT5G59890.1 (actin depolymerizing factor 4 )

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-62
Identity = 113/137 (82.48%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKL+FLELK KRTHRFI++KIEEK KQV+VEK+G P  +YEDFAASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYA+YDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSR 138
           LQATDPTEM LDV++SR
Sbjct: 121 LQATDPTEMDLDVLKSR 137

[Close]

BLAST of CmaCh03G004390.1 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-60
Identity = 105/140 (75.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MAN+ASGM VNDECK+KFLELK KRT+RFI+FKI+EK +QV +EKLG P ++Y+DF +S+
Sbjct: 1   MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSI 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYAVYDFDF TE+NCQKS+IFFIAWSPD SRVRSKM+YASSKDRFKRE++GIQVE
Sbjct: 61  PDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRAGI 141
           LQATDP+EM LD+I+ R  +
Sbjct: 121 LQATDPSEMSLDIIKGRLNL 140

[Close]

BLAST of CmaCh03G004390.1 vs. TAIR 10
Match: AT5G59880.1 (actin depolymerizing factor 3 )

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 110/138 (79.71%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MANAASGMAVNDECKLKFLELKTKRTHRFIIFKIEEKLKQVVVEKLGGPSQSYEDFAASL 60
           MANAASGMAV+D+CKLKF+ELKTKRTHRFII+KIEE  KQV+VEK+G P Q++ED AASL
Sbjct: 1   MANAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASL 60

Query: 61  PTDECRYAVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGIQVE 120
           P DECRYA++DFDFV+ E   +SRIFF+AWSPD +RVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPTEMGLDVIRSRA 139
           LQATDPTEM LDV +SRA
Sbjct: 121 LQATDPTEMDLDVFKSRA 138

The following BLAST results are available for this feature:

BLAST of CmaCh03G004390.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVI2	6.7e-64	86.23	Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1	[more]
Q9FVI1	8.8e-64	86.33	Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1	[more]
Q0DLA3	3.7e-62	84.06	Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 P...	[more]
Q39250	8.2e-62	83.33	Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1	[more]
Q9ZSK3	3.1e-61	82.48	Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2	[more]

BLAST of CmaCh03G004390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IRV5	4.1e-72	100.00	actin-depolymerizing factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478768 P...	[more]
A0A6J1GD54	1.2e-71	99.29	actin-depolymerizing factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453110...	[more]
A0A6J1I5N8	2.5e-69	97.10	actin-depolymerizing factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471251 P...	[more]
A0A6J1HFY8	2.5e-69	97.10	actin-depolymerizing factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111463208...	[more]
A0A0A0KX62	2.7e-68	95.65	ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G294380 PE=3 ...	[more]

BLAST of CmaCh03G004390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978980.1	8.4e-72	100.00	actin-depolymerizing factor 1-like [Cucurbita maxima]	[more]
XP_022949831.1	2.5e-71	99.29	actin-depolymerizing factor 1-like [Cucurbita moschata] >XP_023543253.1 actin-de...	[more]
XP_038881189.1	1.8e-69	97.83	actin-depolymerizing factor 1-like isoform X3 [Benincasa hispida] >XP_038881190....	[more]
XP_022972737.1	5.1e-69	97.10	actin-depolymerizing factor 1-like [Cucurbita maxima] >XP_023517168.1 actin-depo...	[more]
XP_022962833.1	5.1e-69	97.10	actin-depolymerizing factor 1-like [Cucurbita moschata]	[more]

BLAST of CmaCh03G004390.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46010.1	5.8e-63	83.33	actin depolymerizing factor 1	[more]
AT3G46010.2	2.2e-62	83.21	actin depolymerizing factor 1	[more]
AT5G59890.1	2.2e-62	82.48	actin depolymerizing factor 4	[more]
AT4G00680.1	1.2e-60	75.00	actin depolymerizing factor 8	[more]
AT5G59880.1	2.1e-60	79.71	actin depolymerizing factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 12..139 e-value: 4.3E-59 score: 212.3
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 14..136 e-value: 3.0E-37 score: 127.2
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 7..139 score: 38.665192
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 1..139 e-value: 5.4E-53 score: 181.0
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 1..138
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 6..138 e-value: 1.58755E-67 score: 198.55
None	No IPR available	PANTHER	PTHR11913:SF74	ACTIN-DEPOLYMERIZING FACTOR 2-LIKE	coord: 1..138
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 2..137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G004390	CmaCh03G004390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G004390.1:exon:790	CmaCh03G004390.1:exon:790	exon
CmaCh03G004390.1:exon:789	CmaCh03G004390.1:exon:789	exon
CmaCh03G004390.1:exon:788	CmaCh03G004390.1:exon:788	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G004390.1:cds	CmaCh03G004390.1:cds_3	CDS
CmaCh03G004390.1:cds	CmaCh03G004390.1:cds_2	CDS
CmaCh03G004390.1:cds	CmaCh03G004390.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G004390.1:five_prime_utr	CmaCh03G004390.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G004390.1	CmaCh03G004390.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003779	actin binding
molecular_function	GO:0051015	actin filament binding