CmaCh03G003330.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G003330.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	kinetochore protein SPC24 homolog
Location	Cma_Chr03: 4073482 .. 4078322 (-)
Sequence length	1063
RNA-Seq Expression	CmaCh03G003330.1
Synteny	CmaCh03G003330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGCAAAGGGGCGTCCCTCAAGAGACGCCCATCCAGCCATATGCGGGCCAACATAGAAGAATGCCATGATGCAATCGAGGAGGACGATTATGATATGATTGTGATTCGAGTAAGTCATCGACGATGATGACTAAGTTAAGTGAAGGAGAATGTCACAAACATAGTATGAAGAGAGTAGGTTATGACCCTCACGCCATGACAAGCAAAGGGGCGTCCCTCAAGAGACGTCCATCTGGCCAACATAGAAGAATGCCATGATGCGATCGAGGAGGACGATGCATCATCCAACACACCACCACACAAAGTGGGCATTGAAGACATGTTGAGACATAAGCATAACAGAGACATCATGAAGGACAAGATAAGCTTGTTGAAGGGCCGGGTAAAGTCCCATCCAGCAACTAGTAACTAGCTGTTTACGAGGAAGAGTCAACTAGTGAGATTTTATTTATTAACGTAACTTATATAGTAGATCAGTATGATGTTTTAAATAATTAAAAAAAAAAAAAAACTCAACCTAACCCAACCCGAAAATAGAGGGTTAGGTTGTGAACTTTATTCAAATTACTCGGATCATCAACCCAAAATTTCGAGTTGATCCTAAATATTTTTCCACCCCAACCCATATACACCCGTAGATTCGACTAAATAGTCCCATATAGACGTCCTTTGAAAATATGGCCCTTGAGAAAATTTCTAATATTATATATACATCGATTTATTCAATATATGAGACATCATCTGATGATATATTATTTTATTCTTTGAGTTTATATAATCATTACTATTTTTTTTTATTGACAAAGGAAGATATATAAAATTTTCCTTTTTTTTTTAATGTTTTTTTGCCCGACATTTTATAAATTAAGTATTCACATGTTTTTCATCGGTAAATCTAGTCTTATTTGAAAGTTTCAAATTTAAATTGTGCATTGTGCAAAAATCTTGCTTTTTTCGACAATCCATTTACGGTCGTGAAATGTCAGGTATCTCGTCTTCGTATAAAAACAATCATTAATTATAGTGGCTCTAGAATTAGATCGGTTTCATGTTGTAGAATGAATGCATAGTTTGAACGGAAGTTTCTGAGATGAGACATGAATTTTACGGTGTGAACGATTTGAAACTATGTTCTTCGTTAGAAACTATTCTACGAAGGGATCCACCATTTATAAAGGTCGAAAGTAATAATTGATATATTTCACGGTAACATGAAAGAGATCGAAGAAGATTTTTAGCGATTAAATTACCTATGGTAATAGAAATAAATGATAGCCTCACATTCAAATATTTTGAATGTTTTTTATTATAAGGTATTTGCGTGATTAAATGTTTAAATTTTGTGTTTATGACATTATATTTTCTTAATTTTTTATTTTGAGTTGGTAGCGAGAGATTGTTAGCAAGTAATACTACTACTAATTCTCGTTCGATTAATTTCCTTTCGGGAGCTGAAACCAACATTCTAATCATGTATCGTGAATTGTATCAAGACCAATAACCTCTTAATTGGATTTGCCTCTCGAATTGACTATTGAAAATGAGATGAGGTGATGCTCTCTTTCAATTATATGCATCTCAAAGTTGGTCTTCAACTGGCACAAAATTGACCTAGCACTCGGATGTGCCCCTCTCCGACCTCAAGAACTCGAGCAGTTATTGTAGTGGTAGCCAATTTAATTGTGTAGGATATCTTTATAATCAAGAACTCGAGCGGTCATTATGTTCCTACTGGATTGATGGTAAATGTTCCCATGCAAATTATATCTTTATCTTTTTCAAAGTCAGTTTTATGTTTGAAGACCTAATACTTTGAGGTTTTTTTTAGTAATTTTTATTAATTAAATTAATATGAAAAGTTAGCTTTTAACTTAGATAATAATAACAACAAATTACAAAGTTCATTTAGTTGGCAAAATAAATAAAAATAAATAAAATTGGATTGAATTTGAATTTAAAAAAAAAAAAATCCAAAAAGTCGTCAACAGCAGGATTCGAACCTGCGCAGGCAAAGCCCAACAGATTTCGAGTCTGTCTCCTTAACCACTCGGACATATTGACAATTTGTGCTTTGCTAATCTATTGTTAGAATACATACGTTTTGCTTTTTCATATTATAAATCGATATTAGCTCTCTCTCATAACTAAAAAATAAAAAATATATATATAGTCTATTTAATTTTATTTATTTTAAAATACTTTTCCGGTTATAGTGTTTAAAAAAATGTTCATGCACTTTGAAAAGTAAAATTAAAATGTTTGGAAATAATTTATAATGAATGAATGCACAAGAATTTTCTTAAAAACTTTTTTTAATAAAGATTTTTTTTTTTATTTTTATTATTTAGTTTAAAGGTATTTTTAAAGTTGATATAAAATTTATCGGTGATTTTATTAATTTAGCCATATTTAAATAAAATACATTGATTTTTGGCGCCAAAACAAAATTGATTTTTCTGAGTTGGAGCCCTAGGAATGAAGATCGCCCGAAAAAGGCTTCCCCACTGACTCCTGAATTCAAAATTTACTATCGTCACTTTACTCTTCTTCTCTCCCCTGAAATTTCCCCTACTTCCAGGAACCTCGTTGTCGATTTGTTGTTCAATTAACAGGAATGGCAGATTTCGCCGGAAAGTTCAACATCGAGGAGATTTTATCTTATGGCGACGATCTGGTAGCGCTCTTGAACGACCAAAATGATGTTCAAACCTTGAATCAATGTCTTGAACATTTCAAGACGCTTCAATCTTCTTGCTTCGATGATTTCAGTAATGTTCAAAGCTCAGTTCAAGGTCTACTCTCTCTCTCTCTCTAAATAAAGGTTGTATTTCAAATCATTTCGAGGTTATAAATTCTAGGTCTTTTGCAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACAGAGGAGGCGAAAGCGAGCACTGTTGCAGATGATGAAATCGATATTCTCGAAAAGGAGCTCGGAGAGGAACTTGGCAAAGGGAATTTGCTAATGGAGGAAATTAGATAAGTGTAAAATTAACTTTTATTGTTAAGCTATTCATATGATTGTTTGTTCCTAATGTATTTTCCTGTCACATGTATGTATGATGCACCCGCTTTTCGTCAACACAATTATCACCAGTGAGATTAATGATCTAGACCGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAATGAAGAAACTTGAGCAACAAGAACTTAGGACGCAGTGAGTTTCTTTTCTGTTTTGAAGTTGCTTTGTCATCTGTAATTGTGACTTCATTTGGTAGCAATTAACTAATCCTGTGAATTTTGTATCTATTTCAGCATTGTGCAGTATCAAGTATTATCTGACAAACACATCTTTTTTAATGTATTTTTAGTTGGAACTTGGAAGTTGAGAAGGTTTACCTTTTATGCACATAAATTATAGGTTATTGGCACCTTTGTTCTTCCTATTGATAGCTTATGGTTAGAAAAGTTAACAAGGTAGGCACTCCTATGAAGATGGCTGCTTAATTTTTTGAAGTAATGAACGTTTTATAGTCTAATATTTGATTCATGATGTCGATAATGCCAACCTCTTCAGATCTTAAAGCTATGGAATCTTTGTCCTGTGTTGAAAATGGAGAGTTTTTCTGTAAGGTATTTGAAATTTGCCAAGAGATGAATGAGAGAAGAAACAGAGGTAACAATGATTAGTAAACAACACTACCAAGTACAAATAGTTGTCAAAGTCATTATTTAAAATGAGGTGGAATGGACTAATATGTTACCACATTAAAGAGGAAAGGGATATATTTATGGAATATAAGCGAGGAGAATTATCTTCCTTGGTACGATATTTTTTAGGTGAAACCAATGAGAGGATACGCCAAAGTAGACAAAATAACATTGTGGAGGGGTGTAACAGCCCAAGCCCACTACTAGTAGATATTGTCCTCTTTGGACTTCTCCTCAAAGTTTTTAAAACACATCTGCTAGGGAGAGGTTTCTACACACCCTTATAAGAAATGTTTCATGCTCCTCCCCAACCGATACCGATGTGGGATCTCCCAACGGGTGTGCTGGATTCACTGTCCTTCACATTTGGAACTGTAGTTCATTCCAGAATTGAATTTGTAGTAGTTGCAATTATCGTATTCGTTTTAACCATGAACTTATAAACTAGGTGGCCATCAAAGATCTCTTACAACTCAATTCTCATTAATCTTTTGATAACATTAACCTGACAATTCTCGTGTTTTGAATTGATTCAAATTTTATTTTTTTCTTGCAGGAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCGTATCCTTCATCTGAATTTGTACTCTTTTCTGTTTCCTTATTGCGATTTCTTTACCTTAACGTTGATCAACTACAGATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCGACTAATATATCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAGTACCAGACATCCATAACATTGTGAATTAGCAGCTCACTATAGCTTGTTCCTTCTTCTTTCTTTATCTCATGGTATTAAAATCGAATGTTTATTTTGTTGTATATGTATGTTTAAAGGACTAATCTCTAAAGTACTGTCGTTTGTGATAACATATTGTAAATCACATCTCCTTAGTCCTTGATGATTATTGAAGAAATGAATGCCCGTCTATGTTAGGCGCCTAGTCTTGCAAATTGTAAATGCATTATCATGGATATTTGATTCTCAAGGAAGCAACTGACTCTGTCTCCACTCCACTCATCTGTAT

mRNA sequence

ATGACAAGCAAAGGGGCGTCCCTCAAGAGACGCCCATCCAGCCATATGCGGGCCAACATAGAAGAATGCCATGATGCAATCGAGGAGGACGATTATGATATGATTGTGATTCGAGAACCTCGTTGTCGATTTGTTGTTCAATTAACAGGAATGGCAGATTTCGCCGGAAAGTTCAACATCGAGGAGATTTTATCTTATGGCGACGATCTGGTAGCGCTCTTGAACGACCAAAATGATGTTCAAACCTTGAATCAATGTCTTGAACATTTCAAGACGCTTCAATCTTCTTGCTTCGATGATTTCAGTAATGTTCAAAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACAGAGGAGGCGAAAGCGAGCACTGTTGCAGATGATGAAATCGATATTCTCGAAAAGGAGCTCGGAGAGGAACTTGGCAAAGGGAATTTGCTAATGGAGGAAATTAGAATTATCACCAGTGAGATTAATGATCTAGACCGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAATGAAGAAACTTGAGCAACAAGAACTTAGGACGCAGAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCGACTAATATATCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAGTACCAGACATCCATAACATTGTGAATTAGCAGCTCACTATAGCTTGTTCCTTCTTCTTTCTTTATCTCATGGTATTAAAATCGAATGTTTATTTTGTTGTATATGTATGTTTAAAGGACTAATCTCTAAAGTACTGTCGTTTGTGATAACATATTGTAAATCACATCTCCTTAGTCCTTGATGATTATTGAAGAAATGAATGCCCGTCTATGTTAGGCGCCTAGTCTTGCAAATTGTAAATGCATTATCATGGATATTTGATTCTCAAGGAAGCAACTGACTCTGTCTCCACTCCACTCATCTGTAT

Coding sequence (CDS)

ATGACAAGCAAAGGGGCGTCCCTCAAGAGACGCCCATCCAGCCATATGCGGGCCAACATAGAAGAATGCCATGATGCAATCGAGGAGGACGATTATGATATGATTGTGATTCGAGAACCTCGTTGTCGATTTGTTGTTCAATTAACAGGAATGGCAGATTTCGCCGGAAAGTTCAACATCGAGGAGATTTTATCTTATGGCGACGATCTGGTAGCGCTCTTGAACGACCAAAATGATGTTCAAACCTTGAATCAATGTCTTGAACATTTCAAGACGCTTCAATCTTCTTGCTTCGATGATTTCAGTAATGTTCAAAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACAGAGGAGGCGAAAGCGAGCACTGTTGCAGATGATGAAATCGATATTCTCGAAAAGGAGCTCGGAGAGGAACTTGGCAAAGGGAATTTGCTAATGGAGGAAATTAGAATTATCACCAGTGAGATTAATGATCTAGACCGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAATGAAGAAACTTGAGCAACAAGAACTTAGGACGCAGAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCGACTAATATATCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAG

Protein sequence

MTSKGASLKRRPSSHMRANIEECHDAIEEDDYDMIVIREPRCRFVVQLTGMADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQDYEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQRISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISSFDICNGIWNMINSP

Homology

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BLAST of CmaCh03G003330.1 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.8e-47
Identity = 88/199 (44.22%), Postives = 146/199 (73.37%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M + +  F+IE+++SYGDDL+ LLN +N    ++Q  E FK L  +C +DF+ +Q S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
            + K+ AC++KTEEA +   A+DEI+ L+KEL EE+ +   L +E+R++  E+ DL+ Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
            S+ E KQ+ K+  + +LR ++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 231 DPTNISSFDICNGIWNMIN 250
           +   +++++ CN IW++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

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BLAST of CmaCh03G003330.1 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.6e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPTNISSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. ExPASy TrEMBL
Match: A0A6J1GFS1 (uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC111453528 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.1e-103
Identity = 197/201 (98.01%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           MADFAGKFNIEE+LSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEA+ STV+DDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPTNISSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.4e-85
Identity = 168/201 (83.58%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M DF+GK NIEE+LSYG+DLVALL DQ DVQTLNQCLEH K LQS C DDFSNV SSVQD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEAKA TVAD E+D+LE+EL EEL K +LLMEEIR++TSEIN+LD QR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIRLVTSEINELDCQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELR QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEL 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPT  S+FDICN IW+MINSP
Sbjct: 181 DPTKTSAFDICNSIWDMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. ExPASy TrEMBL
Match: A0A1S3CKZ4 (uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.4e-85
Identity = 163/201 (81.09%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M DFA   NIEE+ S+ DDLVA+L D  DV  LNQCLEHFKTLQSSC DDF++VQSSV+D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+RQR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           +SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPT ISSFD CNG+WNMINSP
Sbjct: 181 DPTKISSFDTCNGLWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 9.2e-83
Identity = 164/201 (81.59%), Postives = 178/201 (88.56%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M DF+GK NIEE+LSYG+DLV LL DQNDVQTLNQCL+HF  LQSSC DDFSNV   VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH-LVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIE CR KTEEAKA TVADDE+DILEKE+ EEL + +LLMEEIR++T++IN+LDRQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIRLVTNQINELDRQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPT  SSFDICN IWNMINSP
Sbjct: 181 DPTKTSSFDICNDIWNMINSP 200

[Close]

BLAST of CmaCh03G003330.1 vs. NCBI nr
Match: XP_022978290.1 (uncharacterized protein LOC111478320 [Cucurbita maxima])

HSP 1 Score: 389.8 bits (1000), Expect = 1.8e-104
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPTNISSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. NCBI nr
Match: XP_022950424.1 (uncharacterized protein LOC111453528 [Cucurbita moschata])

HSP 1 Score: 385.2 bits (988), Expect = 4.4e-103
Identity = 197/201 (98.01%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           MADFAGKFNIEE+LSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEA+ STV+DDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPTNISSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. NCBI nr
Match: XP_023544537.1 (uncharacterized protein LOC111804085 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.4e-101
Identity = 195/201 (97.01%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           MADFAGKF IEE+LSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSS QD
Sbjct: 1   MADFAGKFKIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSAQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEA+ASTV+DDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR
Sbjct: 61  YEKKIEACRQKTEEARASTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPTNISSFDICN IWNMINSP
Sbjct: 181 DPTNISSFDICNDIWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. NCBI nr
Match: XP_022144074.1 (uncharacterized protein LOC111013852 isoform X1 [Momordica charantia])

HSP 1 Score: 324.7 bits (831), Expect = 7.0e-85
Identity = 168/201 (83.58%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M DF+GK NIEE+LSYG+DLVALL DQ DVQTLNQCLEH K LQS C DDFSNV SSVQD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKIEACRQKTEEAKA TVAD E+D+LE+EL EEL K +LLMEEIR++TSEIN+LD QR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIRLVTSEINELDCQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           ISVQERKQAMKKLEQQELR QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEL 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPT  S+FDICN IW+MINSP
Sbjct: 181 DPTKTSAFDICNSIWDMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. NCBI nr
Match: XP_008464222.1 (PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 9.1e-85
Identity = 163/201 (81.09%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M DFA   NIEE+ S+ DDLVA+L D  DV  LNQCLEHFKTLQSSC DDF++VQSSV+D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
           YEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+RQR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
           +SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEF 180

Query: 231 DPTNISSFDICNGIWNMINSP 252
           DPT ISSFD CNG+WNMINSP
Sbjct: 181 DPTKISSFDTCNGLWNMINSP 201

[Close]

BLAST of CmaCh03G003330.1 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 188.7 bits (478), Expect = 5.6e-48
Identity = 88/199 (44.22%), Postives = 146/199 (73.37%), Query Frame = 0


Query: 51  MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 110
           M + +  F+IE+++SYGDDL+ LLN +N    ++Q  E FK L  +C +DF+ +Q S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 111 YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 170
            + K+ AC++KTEEA +   A+DEI+ L+KEL EE+ +   L +E+R++  E+ DL+ Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 171 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 230
            S+ E KQ+ K+  + +LR ++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 231 DPTNISSFDICNGIWNMIN 250
           +   +++++ CN IW++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

[Close]

BLAST of CmaCh03G003330.1 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-30
Identity = 72/185 (38.92%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 59  NIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQDYEKKIEAC 118
           N E ++S+GD+L+ +L+D+     L Q LE  + +  SC +DF  +  S+QD +KK++ C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 119 RQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQRISVQERKQ 178
           ++KT+EA +    ++EI+ L+KEL EEL     L EE+           R     +E + 
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEEL-----------RYEALFEEHRL 126

Query: 179 AMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTNISS- 238
           A+K+ ++ +LRT+ KL MYASVT +IPN+DD  K SG++V R+KR++ +FEFD    +S 
Sbjct: 127 AIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSNKSTSV 180

Query: 239 FDICN 243
           ++ CN
Sbjct: 187 YETCN 180

The following BLAST results are available for this feature:

BLAST of CmaCh03G003330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	7.8e-47	44.22	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of CmaCh03G003330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPN8	8.6e-105	100.00	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]
A0A6J1GFS1	2.1e-103	98.01	uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1CR83	3.4e-85	83.58	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CKZ4	4.4e-85	81.09	uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=...	[more]
A0A6J1HU69	9.2e-83	81.59	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]

BLAST of CmaCh03G003330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978290.1	1.8e-104	100.00	uncharacterized protein LOC111478320 [Cucurbita maxima]	[more]
XP_022950424.1	4.4e-103	98.01	uncharacterized protein LOC111453528 [Cucurbita moschata]	[more]
XP_023544537.1	1.4e-101	97.01	uncharacterized protein LOC111804085 [Cucurbita pepo subsp. pepo]	[more]
XP_022144074.1	7.0e-85	83.58	uncharacterized protein LOC111013852 isoform X1 [Momordica charantia]	[more]
XP_008464222.1	9.1e-85	81.09	PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]	[more]

BLAST of CmaCh03G003330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	5.6e-48	44.22	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	1.1e-30	38.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 166..193
None	No IPR available	COILS	Coil	Coil	coord: 101..128
None	No IPR available	GENE3D	3.30.160.570	Ncd80 complex, Spc24 subunit	coord: 189..250 e-value: 4.8E-10 score: 41.1
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 51..247

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G003330	CmaCh03G003330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G003330.1:exon:292	CmaCh03G003330.1:exon:292	exon
CmaCh03G003330.1:exon:291	CmaCh03G003330.1:exon:291	exon
CmaCh03G003330.1:exon:290	CmaCh03G003330.1:exon:290	exon
CmaCh03G003330.1:exon:289	CmaCh03G003330.1:exon:289	exon
CmaCh03G003330.1:exon:288	CmaCh03G003330.1:exon:288	exon
CmaCh03G003330.1:exon:287	CmaCh03G003330.1:exon:287	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G003330.1:three_prime_utr	CmaCh03G003330.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G003330.1:cds	CmaCh03G003330.1:cds_6	CDS
CmaCh03G003330.1:cds	CmaCh03G003330.1:cds_5	CDS
CmaCh03G003330.1:cds	CmaCh03G003330.1:cds_4	CDS
CmaCh03G003330.1:cds	CmaCh03G003330.1:cds_3	CDS
CmaCh03G003330.1:cds	CmaCh03G003330.1:cds_2	CDS
CmaCh03G003330.1:cds	CmaCh03G003330.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G003330.1	CmaCh03G003330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation