CmaCh02G014450.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G014450.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr02: 8317063 .. 8318699 (+)
Sequence length	1129
RNA-Seq Expression	CmaCh02G014450.1
Synteny	CmaCh02G014450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCTGCGAAGGGGGGGTAACATGGAGTTGGAGTTGGGGCAGAGCGAGGGAAAGTAACCTTACAATTGCTTGTGTGTAAAGCTTTCTTTCTGCAAATTGGCAGTCCATTTCGTCACTAATCAATCCAAAAATCAATACCCATGATTCAATTTTCTTCTCTTCTCGTTTTCTATATTTGTCCCATTTCAATGGCTTTTCTTTCTCCTTCTCTCTCTCCCCACTATTTTCCTCTTCGTCTTCTTCGCCTTTCCCTGTTATTCCCCTCTCTTTCACAGCTGTTTTCACTGTTCCTGTAAGTGTAATGGGTCCATCTCCATCTCCTCCTTCGCTTCTCGTGGATTCAAGCTGACCCAGGTGACCCATTTTTCTGTTTTTCCCATTATTTAGCTATCTAGTTTGCTCTGACATTGTAATATTGCTTCACTACTCACTAACACTGATTGCAAAAAGTTCATTTTATCTTTCATTTTTGTAGCCCCATCAAACCCACTTTCTTTTTTTCTTCATAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTTAATGGAGACTTGTGTTGTAATCAGTAGTGTCATTTCGCCATTAACATGGCCTACCCCTTTTGTTTTCTGTAGGGAAATGATATGAGGTCTCTTCAAGCAGTTTCCTCTGTATTTGGTTGGCAAATGGCCACCATTTGTCTTGGAATTGATAGAAATAGCTTCACTGCTTCCTTAAATTGTGGATTATTAGCTTTCTTTACTTTCTTTTGCTGTCAAAGATGCGTGTAGGGGAAGGCAATTAGTGAGTTTTGTAAGAAACAGGAGATAATAATACGTTATGTTCACTTCTGCTTGGAACTATTTGTCCATATGTATAATGAGTTTTTAATTTTTAAAAGAAGCAGGGTTTCTCTTTTCCCCTAAATTAATTTTGATTCATCCTTAATTTTAGCCTGCGTTTTGTTTTACTTACTGATGGAATGTTTTTTCATGTGTGAGAAGTGTAGACCAAGGTGATAGATTCTCTTTTGTTCTCTTCTGATATTTGGGAAGACAATCAATTTTGTGCTCTTTTGATAAAGTGGTTACTTTTTTGGTTTCTCCTTTTCTTATCATTGTGAGCCATAGTTAATCATTCACCATGCCAATAGGGTCATCAGCAAGATTAGGATCACGGGAGAAAAGAACCGCATGGACACGAGGAAGCTGTTCTTGGACTACATTTCCTCGAATTGTTCTCAGCTGGTAAGAAATCCTCAGAATTCAATGGTGTCAGGTGAAAACATGTCTTTTTTGCTTCTGTTTTGAACTCTTTGTTGAAATTCTTGGGTTTCAATGTTGTTTTTCTAGTATTTGACTCATGGGTTTGAGTGAAATATTCATCCATAAATGTATTTTGGGCTTCTCACTGGTGTACTATAGTTGTATTTGAAAGATAGCAAACCCCGTTCCAGTTTAGTTCTCTTTAACTCATGGTTGTAGATGCAACGAAAATATGGCATATCTGGAAATGAGAGATTTTCATTATTAAGAGACTTGGAGGCATCAAATGCCCTTACTATATGTGCTTTTGATCATTATGTTAACCAGAGGAACTGCTATCACATCATTGATGGAGATTATCTGGGGATTTTGATGATCTGA

mRNA sequence

AAAGCTGCGAAGGGGGGGTAACATGGAGTTGGAGTTGGGGCAGAGCGAGGGAAAGTAACCTTACAATTGCTTGTGTGTAAAGCTTTCTTTCTGCAAATTGGCAGTCCATTTCGTCACTAATCAATCCAAAAATCAATACCCATGATTCAATTTTCTTCTCTTCTCGTTTTCTATATTTGTCCCATTTCAATGGCTTTTCTTTCTCCTTCTCTCTCTCCCCACTATTTTCCTCTTCGTCTTCTTCGCCTTTCCCTGTTATTCCCCTCTCTTTCACAGCTGTTTTCACTGTTCCTGTAAGTGTAATGGGTCCATCTCCATCTCCTCCTTCGCTTCTCGTGGATTCAAGCTGACCCAGGGAAATGATATGAGGTCTCTTCAAGCAGTTTCCTCTGTATTTGGTTGGCAAATGGCCACCATTTGTCTTGGAATTGATAGAAATAGCTTCACTGCTTCCTTAAATTGTGGATTATTAGCTTTCTTTACTTTCTTTTGCTGTCAAAGATGCGTGTAGGGGAAGGCAATTAGTGAGTTTTGTAAGAAACAGGAGATAATAATACGTTATGTTCACTTCTGCTTGGAACTATTTGTCCATATGTATAATGAGTTTTTAATTTTTAAAAGAAGCAGGGTTTCTCTTTTCCCCTAAATTAATTTTGATTCATCCTTAATTTTAGCCTGCGTTTTGTTTTACTTACTGATGGAATGTTTTTTCATGTGTGAGAAGTGTAGACCAAGGTGATAGATTCTCTTTTGTTCTCTTCTGATATTTGGGAAGACAATCAATTTTGTGCTCTTTTGATAAAGTGGTTACTTTTTTGGTTTCTCCTTTTCTTATCATTGTGAGCCATAGTTAATCATTCACCATGCCAATAGGGTCATCAGCAAGATTAGGATCACGGGAGAAAAGAACCGCATGGACACGAGGAAGCTGTTCTTGGACTACATTTCCTCGAATTGTTCTCAGCTGATGCAACGAAAATATGGCATATCTGGAAATGAGAGATTTTCATTATTAAGAGACTTGGAGGCATCAAATGCCCTTACTATATGTGCTTTTGATCATTATGTTAACCAGAGGAACTGCTATCACATCATTGATGGAGATTATCTGGGGATTTTGATGATCTGA

Coding sequence (CDS)

ATGGACACGAGGAAGCTGTTCTTGGACTACATTTCCTCGAATTGTTCTCAGCTGATGCAACGAAAATATGGCATATCTGGAAATGAGAGATTTTCATTATTAAGAGACTTGGAGGCATCAAATGCCCTTACTATATGTGCTTTTGATCATTATGTTAACCAGAGGAACTGCTATCACATCATTGATGGAGATTATCTGGGGATTTTGATGATCTGA

Protein sequence

MDTRKLFLDYISSNCSQLMQRKYGISGNERFSLLRDLEASNALTICAFDHYVNQRNCYHIIDGDYLGILMI

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh02G014450.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G014450.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G014450	CmaCh02G014450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G014450.1:exon:1217	CmaCh02G014450.1:exon:1217	exon
CmaCh02G014450.1:exon:1218	CmaCh02G014450.1:exon:1218	exon
CmaCh02G014450.1:exon:1219	CmaCh02G014450.1:exon:1219	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G014450.1:five_prime_utr	CmaCh02G014450.1:five_prime_utr	five_prime_UTR
CmaCh02G014450.1:five_prime_utr	CmaCh02G014450.1:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G014450.1:cds	CmaCh02G014450.1:cds	CDS
CmaCh02G014450.1:cds	CmaCh02G014450.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G014450.1	CmaCh02G014450.1-protein	polypeptide