CmaCh02G013910.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013910.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SNF1-related protein kinase regulatory subunit beta-3-like
Location	Cma_Chr02: 8082997 .. 8083703 (-)
Sequence length	631
RNA-Seq Expression	CmaCh02G013910.1
Synteny	CmaCh02G013910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACCCTTTCCCTGAAGATAGTGTAAGCTGCTAATCCTAGTTGTGTTCATCTTCTAATTACACGAAATGGGGTTTTAAAACTTGAATCCTTTCTACAGGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGATGATGCACGCGATCCACCACCCGTCCCACCTCATTTGCAGCACACCTTACTCAGTCACCCAGCAGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCGCGCCTTAGTTATGCATATACATCTAAATCATTCAATAGAACTAGTCCATCGGTAGAAATTGTTTATGAAGTTAGAGCGGAAGCATTTAACTTCTTCACCAAGTAAATGATTGTTGATGGGTAGATATTGTTCTTGCATTTTTTGAACTGTTAAAAGATGCAAATACTTCTTATTTTCTTAGCTCGAAGTTTAGACTTTAGAGTTCGGTTTGTAGGATGTGTTTATTAATTTAGCCTTTGGATTACATTATATTCGAGGGTTCAATCTATGACCCCATTAACACAA

mRNA sequence

ATGAACAACCCTTTCCCTGAAGATAGTGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGATGATGCACGCGATCCACCACCCGTCCCACCTCATTTGCAGCACACCTTACTCAGTCACCCAGCAGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCGCGCCTTAGTTATGCATATACATCTAAATCATTCAATAGAACTAGTCCATCGGTAGAAATTGTTTATGAAGTTAGAGCGGAAGCATTTAACTTCTTCACCAAGTAAATGATTGTTGATGGGTAGATATTGTTCTTGCATTTTTTGAACTGTTAAAAGATGCAAATACTTCTTATTTTCTTAGCTCGAAGTTTAGACTTTAGAGTTCGGTTTGTAGGATGTGTTTATTAATTTAGCCTTTGGATTACATTATATTCGAGGGTTCAATCTATGACCCCATTAACACAA

Coding sequence (CDS)

ATGAACAACCCTTTCCCTGAAGATAGTGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGATGATGCACGCGATCCACCACCCGTCCCACCTCATTTGCAGCACACCTTACTCAGTCACCCAGCAGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCGCGCCTTAG

Protein sequence

MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP

Homology

[Close]

BLAST of CmaCh02G013910.1 vs. ExPASy Swiss-Prot
Match: Q9ZUU8 (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-37
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MN+  P+D + TTVVGFEVP SP S+YNNVY  +ED+ RDPP VPPHLQH+LL +    +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNVVLNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of CmaCh02G013910.1 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 185 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 244

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 245 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]

BLAST of CmaCh02G013910.1 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           ++N  PE+ +  ++V FE P SPD +Y      +ED A++P  VPP L  TLL      +
Sbjct: 178 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTE 237

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
                  PQ+VVLNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 238 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]

BLAST of CmaCh02G013910.1 vs. ExPASy Swiss-Prot
Match: Q9QZH4 (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 18  EVPKSPDSTYNN--VYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAG-GTLPLPQNVVLN 77
           ++  SP   Y        SE+  + PP +PPHL   +L+           LP P +V+LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+     T  SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of CmaCh02G013910.1 vs. ExPASy Swiss-Prot
Match: Q9Y478 (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-08
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 18  EVPKSPDSTYNN--VYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAG-GTLPLPQNVVLN 77
           E+  SP   Y+        E+  R PP +PPHL   +L+   G       LP P +V+LN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+  + +    V+ L  THR+  KYVT +LYKP+
Sbjct: 238 HLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270

[Close]

BLAST of CmaCh02G013910.1 vs. TAIR 10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-38
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MN+  P+D + TTVVGFEVP SP S+YNNVY  +ED+ RDPP VPPHLQH+LL +    +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNVVLNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of CmaCh02G013910.1 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 155 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 214

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 215 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259

[Close]

BLAST of CmaCh02G013910.1 vs. TAIR 10
Match: AT4G16360.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 154 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 213

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 214 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 258

[Close]

BLAST of CmaCh02G013910.1 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 157 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 216

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 217 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]

BLAST of CmaCh02G013910.1 vs. TAIR 10
Match: AT5G21170.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-21
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           ++N  PE+ +  ++V FE P SPD +Y      +ED A++P  VPP L  TLL      +
Sbjct: 178 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTE 237

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
                  PQ+VVLNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 238 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

The following BLAST results are available for this feature:

BLAST of CmaCh02G013910.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUU8	5.9e-37	64.35	SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX...	[more]
Q9SCY5	1.1e-24	54.21	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
Q84VQ1	2.9e-20	48.65	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]
Q9QZH4	2.0e-08	36.84	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q9Y478	5.7e-08	36.84	5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1...	[more]

BLAST of CmaCh02G013910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28060.1	4.2e-38	64.35	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.1	8.1e-26	54.21	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.2	8.1e-26	54.21	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.3	8.1e-26	54.21	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.1	2.1e-21	48.65	5'-AMP-activated protein kinase beta-2 subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006828	Association with the SNF1 complex (ASC) domain	SMART	SM01010	AMPKBI_2	coord: 20..109 e-value: 8.8E-29 score: 111.6
IPR006828	Association with the SNF1 complex (ASC) domain	PFAM	PF04739	AMPKBI	coord: 39..108 e-value: 8.7E-21 score: 74.0
None	No IPR available	GENE3D	6.20.250.60		coord: 13..109 e-value: 7.5E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
IPR043554	SNF1-related protein kinase regulatory subunit beta	PANTHER	PTHR46316	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1	coord: 1..115
IPR030067	SNF1-related protein kinase regulatory subunit beta-3	PANTHER	PTHR46316:SF5	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3	coord: 1..115
IPR037256	ASC domain superfamily	SUPERFAMILY	160219	AMPKBI-like	coord: 12..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G013910	CmaCh02G013910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013910.1:exon:2237	CmaCh02G013910.1:exon:2237	exon
CmaCh02G013910.1:exon:2236	CmaCh02G013910.1:exon:2236	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013910.1:three_prime_utr	CmaCh02G013910.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013910.1:cds	CmaCh02G013910.1:cds_2	CDS
CmaCh02G013910.1:cds	CmaCh02G013910.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013910.1	CmaCh02G013910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043562	cellular response to nitrogen levels
biological_process	GO:0009744	response to sucrose
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016301	kinase activity