CmaCh02G012940.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012940.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	fasciclin-like arabinogalactan protein 17
Location	Cma_Chr02: 7607217 .. 7611549 (+)
Sequence length	1534
RNA-Seq Expression	CmaCh02G012940.1
Synteny	CmaCh02G012940.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATATTCATCGCAACTTTTAGCTCACAGACAGCTTCACACACACACACACAGTACCTCTTCTCTCTCTCTAGCGTCTCTTTCTCTCTCTTCCGAGTTTCCCACCGGCGCCTGAATACCACCGCATTCCCCGGCCGCCATGGATTTCACCATCCGTGGCGCCTCGAAGCTCTGGTTTGCTGTACTTTTTGTGGTGTTACCGATTTTTGTGGCGGTTGCATTGCCGGAAAATTCGACTTCTAGGTCGTCGTCTCCAGCAATGTCCGGCCAAATCAACTCAAATTCCATCCTCGTCGCTTTACTGGACTCTCATTATACGGAGCTGGCCGAGATAGTTGAGAAGGCTATGCTATTGCAGACCCTAGAGGACGCCGTCGGCAACCACAATATCACCATTTTCGCCCCTAAAAATGAAGCTCTGGAGCGCGATCTAGACCCTGAGTTTAAGAGGTTCCTTCTTGAACCGGGGAACTTGAAGTCGCTCCAGACCTTGCTGATGTTCCATGTGATTCCGACTCGGATCGGATCGAAAGACTGGCCGAGTCATTCCAAGTCCGCACGGCAATCCACGCTTTCCAAGCACGTTCTTCATCTCGTTGGTCATGATACCGGGGAGAAGACCGTCGATCTCGCCAATGTGATCCAATCCGATGCAATTACCAGACCGGACGGCGTTATTCACGGGATTGAACGATTGTTAATCCCTCAGTCCGTACAGGATGATTTCAATCGCAGACGGAATCTACAGGCTATAACCGCCGTGAAGCCGGAGGGAGCGCCTGAAGTGGATCCCAGGACTCACCGGCTAAAGAAACCTGCTCCACCTGCCGAACCTGGTTCAACGCCTGTCATTCCGATATACGATGCGTTGGCTCCAGGACCTAGTTTGGCTCCGGCTCCAGCACCAGGGCCCGGCGGAGCTCATCGTCATTTCAACGGCGAGAGGCAAGTTAAAGATTTCATCCACACTCTGCTACACTATGGTGGATATAACGAAATGGCCGACATTCTCGTTAACCTAACATCGCTAGCAACGGAAATGGGGCGGCTAGTATCGGAGGGTTATGTGCTCACTGTTCTGGCTCCTAACGATGAAGCCATGGCTAAACTCACTACAGACCAGTTGAGCGAGCCAGGGGCACCAGAGCAGATTATGTACTATCATCTAATACCCGAGTATCAGACGGAAGAGAGCATGTACAACGCTGTAAGGAGGTTCGGGAAGGTGCGATACGACTCCTTGAGGTTGCCGCACAAAGTAGTGGCTCAAGAGGCCGATGGGTCGGTCAAGTTCGGTAATGGAGATGGATCGGCATATTTGTTTGATCCTGATATTTACACGGATGGACGAATCTCGGTGCAGGGCATTGATGGAGTATTATTCCCGCCGGAGGAGACAGAGGCCAAGAACGCACCAAAGGCAGTTCAACCCACCAAAGTCGCGGCCAAGCCCCGGAGAGGTAATGGTTTTGTTAAATTTGAAGTGCATTTTCTACGTTATTTTGATCAATTCCTGACTGGTTTGGATAACGCTTGTTTAGAGTTTACTTCGTCAAGAACTGTAGCATAAATTCTCGAATTCCTTTTAAGAACTTAGAGATTGATGATGCCCATTAGGATTATATCCTTGTGATTTCACCCATCGAGAAGACATTACTTCTGCCATAACCCATGAATTAGACTTGTTCGTCCTAACATTGTTATCAATTGCTATGAAATAAAGAATGTGCTTGACTGTAACCCATTTGGCAAGTTGAATATAATAGATTAGTTACACATATAGGTGCGTGTATTTGACTGATTGGGTGTAGCCTTCATGTGCATTAAAAGTTACTCATTGGGGTTGCTTCAAAATTATGCCTCATCGCAATCAAAGTTGAAAATGAAATGTGAGGATTTCTAGAGACGTATCCATAGGGACAAAATTTCCTCCCTGGGATATTAGCCTTTGCAGGAGGAAGGGTTAACTAGAATTTGGTTGATTGCTGTGTTGTTCGGGCTGTTTTTTTGGACCTTTAGATACTAAAGTAATAATCTGGAGAACGTTAGAGTTTCCAAAAGTTCCGGTAGTCTGGGAAGAGGGTGAGATATTGTCTGCTTTTTATCAGCAGTAGACCTCACAATTTAAGAAGTTATACTAGTGAGAGGTTTGCACATCTTTACCCTCCACAACCAATGTGAGATCTCACAATCCATCTCCTTTAAGTGTCCAGGGACTGTGAGATCTCACAATCCATCTCCTTTAAGTGTCCATGGTCCCTGCTGTCATACTGCTCGGTATTTGACCATGATACTATTTGTAACCGCTCAAGCCCACCACTAACAAAAGATTGTCCGTTTTAGCTCGTAAAGTATCACCCCAGCCTCACAGTTTTAAATGCCAGCCCCCTCTCTAATACATTTTAAAACTTTGAGGGAAAATCCGAAACGAAAACTTAAATAGGATAATATGTACTTTTGGCTTTATATTAGGATGTTTTTTCAATTTAATTTCTTATGTTGCAATTTAGTCTATTGTGTTTCCCTATTTTTTAATTATTCCCTTTCCATCCATAAATGTTAAAATTGACAAATGACAAGCTTTTATAGCATGATACTTCATGAGTTGACTGTAATTTAGAGGAAATATTGGGTTACTTGATTGACGAAAAGTCAAAATTTCTACCAACCTCTTTAACATTTGGAAGAACTAGATGATTTCTCCAGTTAAATGACCTAATTCGTTCTCTAATTTTTTTCCAATGAACTAAATATTGTGTAATTTAGGCTTTATCATAAGTCAATTTTAACATTCAGATGGGCATTATTGAAGCTTAAAATATAAGGGATGAGATCCGAAGCTTTTTAGTAGGAGCTGGCATTGTACTTAAAAGCATGTATTGCTCAAGATATTTAGTAATAAATTATAGTTTACCAAATATATTATATTTGATATTTTATTATAAGGCAAATATCTAATATTTGCTTTATTACCATAGTTATCTTTCCCTCTATTGTTATTTCTATTTATTATTATTTCCATATATTTGTAATTTATTTGATTATAAATAAGATAAATTTTCACCATTTAGGTGTGGTGGATTAATCAAACATTTTTATGGTATCACCAAATATTTTTATGGTATCAAAGCCTTTCGGTTTAACAACCCAATCCTTTATTTTCAATGGTTTTTTAATCCTCTAATCTTCTTCAACACCACCCCTGTTACTGGCTTTGACGCCGCAGAGGCAGTCTTCATGGCTGCCGTAGGCGGAGCCGATTGATTACTCTTCGGCTCCACCCTATTGACCTTCAAATCACCTTTCGTCATATTCTGTACATACAACCTCACCTTTTTCAACTCAATCGGTTTTTCCTTGGCCAATATAGTCTCTCTCATTTTCTTCCCAATTAACCTTTCATCCTTCACAGAAACCCTAATCTCAGAATCCTCATTAGTGTTCTCTTCAGAAATATACGGAATCTCGACAAGCCCATCAACCTTTTGCAGATATTTTCCTTCGGAATTTGGGTGCCACACTGGCCTCTTCGCCAACCAAGTTGCCGTCGCCATTCCTGCCAAAATTGGCTCCTTCGCCCAATGTGGCGACTCTTTCTGACTGCCCTTCTTGCCAAAATTGCCTCCTTCGCCCAATGTGATGATTCTTTCGGCTTCAACATTGTCTTTGTCCCTTGCTCTAGGTTTCCCCTTCTACTTCTTAAGGTTAGACATACTCTCACCAGAGCCAAGGCAGCATCGTCGATGAGCGACAATCCCTCTTCATGGGTTAGACATATTCTCGCCGAAGCCATGGCAGCATAGACGCTAAGCGGCGATCCCTCTGCAATTTTCAATGGCCAAGAAAGTGTTTCTCTACGCCTCTTCTGAACCAGGTTGTTGACATCTTCACGAAAAGTGTTTCTCAACCTCTTTGAATTTTTTTAGATTCAAGCTTCACGTTCGTTTAAATCCGACGCTTAGCTTGCGGTGGGGTGTTAAGGATATTTAGTAATAAATTATAGTTTACTATATATATTATATTTTATTATAGGGCAAATATTAGATATTTGCCTTAATACCATAGTTATCTTTCCATTTATTGTTATTTTCATTGTAAATAAGATAAATTTTCACCATTTAGGTGTGGTGGATTAATCAAACATTCTTATATAGCCTAAAACTTAATATTCGTGCAGATGATTGGCTCACGATTCCTTAATTGCTTTTCTTAATTTAATACTACTGGTTTGAAACTTATCAAATTTTTCGAAATGGCAGGGAAACTACTGGAAGTTACTTGCCGGATGTTGAGAACTTTTGGACAGGATTCCTCTTTCACAGCCTGTCACTGA

mRNA sequence

ATAATATTCATCGCAACTTTTAGCTCACAGACAGCTTCACACACACACACACAGTACCTCTTCTCTCTCTCTAGCGTCTCTTTCTCTCTCTTCCGAGTTTCCCACCGGCGCCTGAATACCACCGCATTCCCCGGCCGCCATGGATTTCACCATCCGTGGCGCCTCGAAGCTCTGGTTTGCTGTACTTTTTGTGGTGTTACCGATTTTTGTGGCGGTTGCATTGCCGGAAAATTCGACTTCTAGGTCGTCGTCTCCAGCAATGTCCGGCCAAATCAACTCAAATTCCATCCTCGTCGCTTTACTGGACTCTCATTATACGGAGCTGGCCGAGATAGTTGAGAAGGCTATGCTATTGCAGACCCTAGAGGACGCCGTCGGCAACCACAATATCACCATTTTCGCCCCTAAAAATGAAGCTCTGGAGCGCGATCTAGACCCTGAGTTTAAGAGGTTCCTTCTTGAACCGGGGAACTTGAAGTCGCTCCAGACCTTGCTGATGTTCCATGTGATTCCGACTCGGATCGGATCGAAAGACTGGCCGAGTCATTCCAAGTCCGCACGGCAATCCACGCTTTCCAAGCACGTTCTTCATCTCGTTGGTCATGATACCGGGGAGAAGACCGTCGATCTCGCCAATGTGATCCAATCCGATGCAATTACCAGACCGGACGGCGTTATTCACGGGATTGAACGATTGTTAATCCCTCAGTCCGTACAGGATGATTTCAATCGCAGACGGAATCTACAGGCTATAACCGCCGTGAAGCCGGAGGGAGCGCCTGAAGTGGATCCCAGGACTCACCGGCTAAAGAAACCTGCTCCACCTGCCGAACCTGGTTCAACGCCTGTCATTCCGATATACGATGCGTTGGCTCCAGGACCTAGTTTGGCTCCGGCTCCAGCACCAGGGCCCGGCGGAGCTCATCGTCATTTCAACGGCGAGAGGCAAGTTAAAGATTTCATCCACACTCTGCTACACTATGGTGGATATAACGAAATGGCCGACATTCTCGTTAACCTAACATCGCTAGCAACGGAAATGGGGCGGCTAGTATCGGAGGGTTATGTGCTCACTGTTCTGGCTCCTAACGATGAAGCCATGGCTAAACTCACTACAGACCAGTTGAGCGAGCCAGGGGCACCAGAGCAGATTATGTACTATCATCTAATACCCGAGTATCAGACGGAAGAGAGCATGTACAACGCTGTAAGGAGGTTCGGGAAGGTGCGATACGACTCCTTGAGGTTGCCGCACAAAGTAGTGGCTCAAGAGGCCGATGGGTCGGTCAAGTTCGGTAATGGAGATGGATCGGCATATTTGTTTGATCCTGATATTTACACGGATGGACGAATCTCGGTGCAGGGCATTGATGGAGTATTATTCCCGCCGGAGGAGACAGAGGCCAAGAACGCACCAAAGGCAGTTCAACCCACCAAAGTCGCGGCCAAGCCCCGGAGAGGGAAACTACTGGAAGTTACTTGCCGGATGTTGAGAACTTTTGGACAGGATTCCTCTTTCACAGCCTGTCACTGA

Coding sequence (CDS)

ATGGATTTCACCATCCGTGGCGCCTCGAAGCTCTGGTTTGCTGTACTTTTTGTGGTGTTACCGATTTTTGTGGCGGTTGCATTGCCGGAAAATTCGACTTCTAGGTCGTCGTCTCCAGCAATGTCCGGCCAAATCAACTCAAATTCCATCCTCGTCGCTTTACTGGACTCTCATTATACGGAGCTGGCCGAGATAGTTGAGAAGGCTATGCTATTGCAGACCCTAGAGGACGCCGTCGGCAACCACAATATCACCATTTTCGCCCCTAAAAATGAAGCTCTGGAGCGCGATCTAGACCCTGAGTTTAAGAGGTTCCTTCTTGAACCGGGGAACTTGAAGTCGCTCCAGACCTTGCTGATGTTCCATGTGATTCCGACTCGGATCGGATCGAAAGACTGGCCGAGTCATTCCAAGTCCGCACGGCAATCCACGCTTTCCAAGCACGTTCTTCATCTCGTTGGTCATGATACCGGGGAGAAGACCGTCGATCTCGCCAATGTGATCCAATCCGATGCAATTACCAGACCGGACGGCGTTATTCACGGGATTGAACGATTGTTAATCCCTCAGTCCGTACAGGATGATTTCAATCGCAGACGGAATCTACAGGCTATAACCGCCGTGAAGCCGGAGGGAGCGCCTGAAGTGGATCCCAGGACTCACCGGCTAAAGAAACCTGCTCCACCTGCCGAACCTGGTTCAACGCCTGTCATTCCGATATACGATGCGTTGGCTCCAGGACCTAGTTTGGCTCCGGCTCCAGCACCAGGGCCCGGCGGAGCTCATCGTCATTTCAACGGCGAGAGGCAAGTTAAAGATTTCATCCACACTCTGCTACACTATGGTGGATATAACGAAATGGCCGACATTCTCGTTAACCTAACATCGCTAGCAACGGAAATGGGGCGGCTAGTATCGGAGGGTTATGTGCTCACTGTTCTGGCTCCTAACGATGAAGCCATGGCTAAACTCACTACAGACCAGTTGAGCGAGCCAGGGGCACCAGAGCAGATTATGTACTATCATCTAATACCCGAGTATCAGACGGAAGAGAGCATGTACAACGCTGTAAGGAGGTTCGGGAAGGTGCGATACGACTCCTTGAGGTTGCCGCACAAAGTAGTGGCTCAAGAGGCCGATGGGTCGGTCAAGTTCGGTAATGGAGATGGATCGGCATATTTGTTTGATCCTGATATTTACACGGATGGACGAATCTCGGTGCAGGGCATTGATGGAGTATTATTCCCGCCGGAGGAGACAGAGGCCAAGAACGCACCAAAGGCAGTTCAACCCACCAAAGTCGCGGCCAAGCCCCGGAGAGGGAAACTACTGGAAGTTACTTGCCGGATGTTGAGAACTTTTGGACAGGATTCCTCTTTCACAGCCTGTCACTGA

Protein sequence

MDFTIRGASKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYTELAEIVEKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHVIPTRIGSKDWPSHSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGVIHGIERLLIPQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIPIYDALAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDSLRLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETEAKNAPKAVQPTKVAAKPRRGKLLEVTCRMLRTFGQDSSFTACH

Homology

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BLAST of CmaCh02G012940.1 vs. ExPASy Swiss-Prot
Match: Q66GR0 (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana OX=3702 GN=FLA17 PE=2 SV=1)

HSP 1 Score: 648.3 bits (1671), Expect = 6.7e-185
Identity = 337/464 (72.63%), Postives = 379/464 (81.68%), Query Frame = 0


Query: 1   MDFTIRGASKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYT 60
           MD  I G S +    LF  + IF A +    + S SS    SGQINSNS+LVALLDS YT
Sbjct: 1   MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSG---SGQINSNSVLVALLDSRYT 60

Query: 61  ELAEIVEKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLM 120
           ELAE+VEKA+LLQTLEDAVG HNITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLLM
Sbjct: 61  ELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLM 120

Query: 121 FHVIPTRIGSKDWPS-HSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGV 180
           FH+IP R+GS  WPS  S   +  TL    + L  +  G+K VDLA +I+ D +TRPDG+
Sbjct: 121 FHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGL 180

Query: 181 IHGIERLLIPQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIP 240
           IHGIERLLIP+SVQ+DFNRRR+LQ+I+AV PEGAPEVDPRT+RLKKPA P   GS P +P
Sbjct: 181 IHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALP 240

Query: 241 IYDALAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLAT 300
           I  A+APGPSLAPAPAPGPGG   HF+GE QVKDFIHTLLHYGGYNEMADILVNLTSLAT
Sbjct: 241 IQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLAT 300

Query: 301 EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRR 360
           EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRR
Sbjct: 301 EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRR 360

Query: 361 FGKVRYDSLRLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEE 420
           FGKV++D+LR PHKV A+EADGSVKFG+G+ SAYLFDPDIYTDGRISVQGIDGVLFP EE
Sbjct: 361 FGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFPQEE 420

Query: 421 TEAKNAPKAVQPTKVAAKPRRGKLLEVTCRMLRTFGQDSSFTAC 464
              ++  K   P K   +PRRGKLLEV C ML  FG+D+  + C
Sbjct: 421 EVVESVKK---PVKKIVQPRRGKLLEVACSMLGAFGKDTYLSKC 457

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BLAST of CmaCh02G012940.1 vs. ExPASy Swiss-Prot
Match: Q8RWC5 (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=FLA16 PE=2 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 2.6e-181
Identity = 330/445 (74.16%), Postives = 369/445 (82.92%), Query Frame = 0


Query: 7   GASKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYTELAEIV 66
           GA+K    +L + L   +A ALP+N         + GQINSNS+LVALLDSHYTELAE+V
Sbjct: 6   GATKF---LLLLFLTTSIATALPDNK-------PVPGQINSNSVLVALLDSHYTELAELV 65

Query: 67  EKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHVIPT 126
           EKA+LLQTLE+AVG HNITIFAP+N+ALER+LDP FK FLLEP NLKSLQ+LLMFH++P 
Sbjct: 66  EKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPK 125

Query: 127 RIGSKDWPSHSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGVIHGIERL 186
           RI S  WPS S   R  TLS   LHL   D     VD A +I+ D + RPDG+IHGIERL
Sbjct: 126 RITSPQWPSLSHHHR--TLSNDHLHLT-VDVNTLKVDSAEIIRPDDVIRPDGIIHGIERL 185

Query: 187 LIPQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIPIYDALAP 246
           LIP+SVQ+DFNRRR+L++I+AV PEGAPEVDPRTHRLKKP+P    G+ PV+PIYDA++P
Sbjct: 186 LIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSP 245

Query: 247 GPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVS 306
           GPSLAPAPAPGPGG   HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVS
Sbjct: 246 GPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVS 305

Query: 307 EGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYD 366
           EGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYH+IPEYQTEESMYNAVRRFGKV+YD
Sbjct: 306 EGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYD 365

Query: 367 SLRLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETEAKNAP 426
           SLR PHKV+AQEADGSVKFG+GDGSAYLFDPDIYTDGRISVQGIDGVLFP EET A    
Sbjct: 366 SLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPKEETPATEIK 425

Query: 427 KAVQPTKVAAKPRRGKLLEVTCRML 452
            A    K  +K RRGKL+EV CRM+
Sbjct: 426 PAAPVVKKVSKSRRGKLMEVACRMM 437

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BLAST of CmaCh02G012940.1 vs. ExPASy Swiss-Prot
Match: Q93W32 (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=FLA18 PE=2 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 1.8e-177
Identity = 318/428 (74.30%), Postives = 359/428 (83.88%), Query Frame = 0


Query: 42  SGQINSNSILVALLDSHYTELAEIVEKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPE 101
           SGQINSNS+LVALLDS YTELAE+VEKA+LLQTLEDAVG HNITIFAP+NEALERDLDP+
Sbjct: 36  SGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPD 95

Query: 102 FKRFLLEPGNLKSLQTLLMFHVIPTRIGSKDWPSHSKSARQSTLSKH--VLHL--VGHDT 161
           FKRFLL+PGNLKSLQTLL+ H+IP R+GS  WP  +    +     H  VLHL  +    
Sbjct: 96  FKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTN 155

Query: 162 GEKTVDLANVIQSDAITRPDGVIHGIERLLIPQSVQDDFNRRRNLQAITAVKPEGAPEVD 221
           G++ V+ A + + D +TRPDG+IHGIERLLIP+SVQ+DFNRRRNL++I+AV PEGAPE+D
Sbjct: 156 GKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEID 215

Query: 222 PRTHRLKKPAPPAE--PGSTPVIPIYDALAPGPSLAPAPAPGPGGAHRHFNGERQVKDFI 281
           PRT+RLKK A       GS PV+PI  A+APGPSLAPAPAPGPGGAH+HFNG+ QVKDFI
Sbjct: 216 PRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFI 275

Query: 282 HTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAP 341
           HTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAM KLTTDQLSEPGAP
Sbjct: 276 HTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAP 335

Query: 342 EQIMYYHLIPEYQTEESMYNAVRRFGKVRYDSLRLPHKVVAQEADGSVKFGNGDGSAYLF 401
           EQIMYYH+IPEYQTEESMYN+VRRFGKV+Y++LR PHKV A+EADGSVKFG+GD SAYLF
Sbjct: 336 EQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLF 395

Query: 402 DPDIYTDGRISVQGIDGVLFPPEETEAKNAPKAVQPTKVAAKPRRGKLLEVTCRMLRTFG 461
           DPDIYTDGRISVQGIDGVLF PEE E +   K   P K   +PRRGKLLEV C ML   G
Sbjct: 396 DPDIYTDGRISVQGIDGVLF-PEEKEEETVKKPTGPVKKVVQPRRGKLLEVACSMLGAIG 455

Query: 462 QDSSFTAC 464
           +DS  + C
Sbjct: 456 KDSYLSRC 462

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BLAST of CmaCh02G012940.1 vs. ExPASy Swiss-Prot
Match: Q9FT45 (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=FLA15 PE=2 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 2.2e-175
Identity = 326/455 (71.65%), Postives = 365/455 (80.22%), Query Frame = 0


Query: 9   SKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYTELAEIVEK 68
           SKL F   F++L I +  ALP+           SGQINSNS+LVALLDSHYTELAE+VEK
Sbjct: 5   SKLLF---FLLLTISITTALPDKPG--------SGQINSNSVLVALLDSHYTELAELVEK 64

Query: 69  AMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHVIPTRI 128
           A+LLQTLE+AVG HNITIFAP+N+ALE++LDPEFK FLL+P NLKSLQ+LLMFH++P RI
Sbjct: 65  ALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRI 124

Query: 129 GSKDWPSHSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGVIHGIERLLI 188
            S  + S   S R  TLS   LH          V+ A + + D +TRPDG+IHGIERLLI
Sbjct: 125 TSPQFSSAVVSHR--TLSNDHLHFT-----NGKVNSAEITKPDDLTRPDGIIHGIERLLI 184

Query: 189 PQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIPIYDALAPGP 248
           P+SVQ+DFNRRR+L++I AV PEGAPEVDPRTHRLKK   P   G+ PV+P+YDA++PGP
Sbjct: 185 PRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGP 244

Query: 249 SLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEG 308
           SLAPAPAPGPGG   HFNGE QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEG
Sbjct: 245 SLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEG 304

Query: 309 YVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDSL 368
           YVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYH+IPEYQTEESMYN+VRRFGK+RYDSL
Sbjct: 305 YVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSL 364

Query: 369 RLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETEAKNAPKA 428
           R PHKV AQEADGSVKFG+GDGSAYLFDPDIYTDGRISVQGIDGVLFP E+T  +     
Sbjct: 365 RFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPEEKTPVEK-KTG 424

Query: 429 VQPTKVAAKPRRGKLLEVTCRMLRTFGQDSSFTAC 464
           V   K A KPRRGKL+EV C ML      S F  C
Sbjct: 425 VPVVKKAPKPRRGKLMEVACTML-----GSQFPTC 435

[Close]

BLAST of CmaCh02G012940.1 vs. TAIR 10
Match: AT5G06390.1 (FASCICLIN-like arabinogalactan protein 17 precursor )

HSP 1 Score: 648.3 bits (1671), Expect = 4.7e-186
Identity = 337/464 (72.63%), Postives = 379/464 (81.68%), Query Frame = 0


Query: 1   MDFTIRGASKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYT 60
           MD  I G S +    LF  + IF A +    + S SS    SGQINSNS+LVALLDS YT
Sbjct: 1   MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSG---SGQINSNSVLVALLDSRYT 60

Query: 61  ELAEIVEKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLM 120
           ELAE+VEKA+LLQTLEDAVG HNITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLLM
Sbjct: 61  ELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLM 120

Query: 121 FHVIPTRIGSKDWPS-HSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGV 180
           FH+IP R+GS  WPS  S   +  TL    + L  +  G+K VDLA +I+ D +TRPDG+
Sbjct: 121 FHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGL 180

Query: 181 IHGIERLLIPQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIP 240
           IHGIERLLIP+SVQ+DFNRRR+LQ+I+AV PEGAPEVDPRT+RLKKPA P   GS P +P
Sbjct: 181 IHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALP 240

Query: 241 IYDALAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLAT 300
           I  A+APGPSLAPAPAPGPGG   HF+GE QVKDFIHTLLHYGGYNEMADILVNLTSLAT
Sbjct: 241 IQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLAT 300

Query: 301 EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRR 360
           EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRR
Sbjct: 301 EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRR 360

Query: 361 FGKVRYDSLRLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEE 420
           FGKV++D+LR PHKV A+EADGSVKFG+G+ SAYLFDPDIYTDGRISVQGIDGVLFP EE
Sbjct: 361 FGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFPQEE 420

Query: 421 TEAKNAPKAVQPTKVAAKPRRGKLLEVTCRMLRTFGQDSSFTAC 464
              ++  K   P K   +PRRGKLLEV C ML  FG+D+  + C
Sbjct: 421 EVVESVKK---PVKKIVQPRRGKLLEVACSMLGAFGKDTYLSKC 457

[Close]

BLAST of CmaCh02G012940.1 vs. TAIR 10
Match: AT2G35860.1 (FASCICLIN-like arabinogalactan protein 16 precursor )

HSP 1 Score: 636.3 bits (1640), Expect = 1.9e-182
Identity = 330/445 (74.16%), Postives = 369/445 (82.92%), Query Frame = 0


Query: 7   GASKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYTELAEIV 66
           GA+K    +L + L   +A ALP+N         + GQINSNS+LVALLDSHYTELAE+V
Sbjct: 6   GATKF---LLLLFLTTSIATALPDNK-------PVPGQINSNSVLVALLDSHYTELAELV 65

Query: 67  EKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHVIPT 126
           EKA+LLQTLE+AVG HNITIFAP+N+ALER+LDP FK FLLEP NLKSLQ+LLMFH++P 
Sbjct: 66  EKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPK 125

Query: 127 RIGSKDWPSHSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGVIHGIERL 186
           RI S  WPS S   R  TLS   LHL   D     VD A +I+ D + RPDG+IHGIERL
Sbjct: 126 RITSPQWPSLSHHHR--TLSNDHLHLT-VDVNTLKVDSAEIIRPDDVIRPDGIIHGIERL 185

Query: 187 LIPQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIPIYDALAP 246
           LIP+SVQ+DFNRRR+L++I+AV PEGAPEVDPRTHRLKKP+P    G+ PV+PIYDA++P
Sbjct: 186 LIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSP 245

Query: 247 GPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVS 306
           GPSLAPAPAPGPGG   HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVS
Sbjct: 246 GPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVS 305

Query: 307 EGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYD 366
           EGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYH+IPEYQTEESMYNAVRRFGKV+YD
Sbjct: 306 EGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYD 365

Query: 367 SLRLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETEAKNAP 426
           SLR PHKV+AQEADGSVKFG+GDGSAYLFDPDIYTDGRISVQGIDGVLFP EET A    
Sbjct: 366 SLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPKEETPATEIK 425

Query: 427 KAVQPTKVAAKPRRGKLLEVTCRML 452
            A    K  +K RRGKL+EV CRM+
Sbjct: 426 PAAPVVKKVSKSRRGKLMEVACRMM 437

[Close]

BLAST of CmaCh02G012940.1 vs. TAIR 10
Match: AT3G11700.1 (FASCICLIN-like arabinogalactan protein 18 precursor )

HSP 1 Score: 623.6 bits (1607), Expect = 1.3e-178
Identity = 318/428 (74.30%), Postives = 359/428 (83.88%), Query Frame = 0


Query: 42  SGQINSNSILVALLDSHYTELAEIVEKAMLLQTLEDAVGNHNITIFAPKNEALERDLDPE 101
           SGQINSNS+LVALLDS YTELAE+VEKA+LLQTLEDAVG HNITIFAP+NEALERDLDP+
Sbjct: 36  SGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPD 95

Query: 102 FKRFLLEPGNLKSLQTLLMFHVIPTRIGSKDWPSHSKSARQSTLSKH--VLHL--VGHDT 161
           FKRFLL+PGNLKSLQTLL+ H+IP R+GS  WP  +    +     H  VLHL  +    
Sbjct: 96  FKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTN 155

Query: 162 GEKTVDLANVIQSDAITRPDGVIHGIERLLIPQSVQDDFNRRRNLQAITAVKPEGAPEVD 221
           G++ V+ A + + D +TRPDG+IHGIERLLIP+SVQ+DFNRRRNL++I+AV PEGAPE+D
Sbjct: 156 GKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEID 215

Query: 222 PRTHRLKKPAPPAE--PGSTPVIPIYDALAPGPSLAPAPAPGPGGAHRHFNGERQVKDFI 281
           PRT+RLKK A       GS PV+PI  A+APGPSLAPAPAPGPGGAH+HFNG+ QVKDFI
Sbjct: 216 PRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFI 275

Query: 282 HTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAP 341
           HTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAM KLTTDQLSEPGAP
Sbjct: 276 HTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAP 335

Query: 342 EQIMYYHLIPEYQTEESMYNAVRRFGKVRYDSLRLPHKVVAQEADGSVKFGNGDGSAYLF 401
           EQIMYYH+IPEYQTEESMYN+VRRFGKV+Y++LR PHKV A+EADGSVKFG+GD SAYLF
Sbjct: 336 EQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLF 395

Query: 402 DPDIYTDGRISVQGIDGVLFPPEETEAKNAPKAVQPTKVAAKPRRGKLLEVTCRMLRTFG 461
           DPDIYTDGRISVQGIDGVLF PEE E +   K   P K   +PRRGKLLEV C ML   G
Sbjct: 396 DPDIYTDGRISVQGIDGVLF-PEEKEEETVKKPTGPVKKVVQPRRGKLLEVACSMLGAIG 455

Query: 462 QDSSFTAC 464
           +DS  + C
Sbjct: 456 KDSYLSRC 462

[Close]

BLAST of CmaCh02G012940.1 vs. TAIR 10
Match: AT3G52370.1 (FASCICLIN-like arabinogalactan protein 15 precursor )

HSP 1 Score: 616.7 bits (1589), Expect = 1.5e-176
Identity = 326/455 (71.65%), Postives = 365/455 (80.22%), Query Frame = 0


Query: 9   SKLWFAVLFVVLPIFVAVALPENSTSRSSSPAMSGQINSNSILVALLDSHYTELAEIVEK 68
           SKL F   F++L I +  ALP+           SGQINSNS+LVALLDSHYTELAE+VEK
Sbjct: 5   SKLLF---FLLLTISITTALPDKPG--------SGQINSNSVLVALLDSHYTELAELVEK 64

Query: 69  AMLLQTLEDAVGNHNITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHVIPTRI 128
           A+LLQTLE+AVG HNITIFAP+N+ALE++LDPEFK FLL+P NLKSLQ+LLMFH++P RI
Sbjct: 65  ALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRI 124

Query: 129 GSKDWPSHSKSARQSTLSKHVLHLVGHDTGEKTVDLANVIQSDAITRPDGVIHGIERLLI 188
            S  + S   S R  TLS   LH          V+ A + + D +TRPDG+IHGIERLLI
Sbjct: 125 TSPQFSSAVVSHR--TLSNDHLHFT-----NGKVNSAEITKPDDLTRPDGIIHGIERLLI 184

Query: 189 PQSVQDDFNRRRNLQAITAVKPEGAPEVDPRTHRLKKPAPPAEPGSTPVIPIYDALAPGP 248
           P+SVQ+DFNRRR+L++I AV PEGAPEVDPRTHRLKK   P   G+ PV+P+YDA++PGP
Sbjct: 185 PRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGP 244

Query: 249 SLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEG 308
           SLAPAPAPGPGG   HFNGE QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEG
Sbjct: 245 SLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEG 304

Query: 309 YVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDSL 368
           YVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYH+IPEYQTEESMYN+VRRFGK+RYDSL
Sbjct: 305 YVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSL 364

Query: 369 RLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETEAKNAPKA 428
           R PHKV AQEADGSVKFG+GDGSAYLFDPDIYTDGRISVQGIDGVLFP E+T  +     
Sbjct: 365 RFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPEEKTPVEK-KTG 424

Query: 429 VQPTKVAAKPRRGKLLEVTCRMLRTFGQDSSFTAC 464
           V   K A KPRRGKL+EV C ML      S F  C
Sbjct: 425 VPVVKKAPKPRRGKLMEVACTML-----GSQFPTC 435

[Close]

BLAST of CmaCh02G012940.1 vs. TAIR 10
Match: AT5G05650.1 (BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 9.4e-25
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 327 DQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDSLRLPHKVVAQEADGSVKFG 386
           DQLSE    +QI YYH+IPEYQTE+S Y  VRR G +++D+   PH + A+E   S+KFG
Sbjct: 2   DQLSE----KQIWYYHIIPEYQTEKSFYACVRRSGMIKFDTFYFPHMLSARETQRSIKFG 61

Query: 387 NGDGSAYLFDPDIYTDGRISVQGIDGVLFPPE 419
           +G  S  L+DPDIYTDG+IS+QG+ GVLFP E
Sbjct: 62  DGVWSGCLYDPDIYTDGKISIQGVGGVLFPRE 89

The following BLAST results are available for this feature:

BLAST of CmaCh02G012940.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q66GR0	6.7e-185	72.63	Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
Q8RWC5	2.6e-181	74.16	Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
Q93W32	1.8e-177	74.30	Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
Q9FT45	2.2e-175	71.65	Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]

BLAST of CmaCh02G012940.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06390.1	4.7e-186	72.63	FASCICLIN-like arabinogalactan protein 17 precursor	[more]
AT2G35860.1	1.9e-182	74.16	FASCICLIN-like arabinogalactan protein 16 precursor	[more]
AT3G11700.1	1.3e-178	74.30	FASCICLIN-like arabinogalactan protein 18 precursor	[more]
AT3G52370.1	1.5e-176	71.65	FASCICLIN-like arabinogalactan protein 15 precursor	[more]
AT5G05650.1	9.4e-25	57.61	BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan prote...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	SMART	SM00554	fasc_3	coord: 85..190 e-value: 1.5E-16 score: 71.0 coord: 312..417 e-value: 2.4E-15 score: 67.0
IPR000782	FAS1 domain	PFAM	PF02469	Fasciclin	coord: 306..416 e-value: 2.6E-7 score: 30.9 coord: 58..189 e-value: 1.0E-19 score: 71.0
IPR000782	FAS1 domain	PROSITE	PS50213	FAS1	coord: 271..399 score: 10.542952
IPR000782	FAS1 domain	PROSITE	PS50213	FAS1	coord: 46..187 score: 17.773304
IPR036378	FAS1 domain superfamily	GENE3D	2.30.180.10	FAS1 domain	coord: 290..417 e-value: 2.9E-9 score: 39.2
IPR036378	FAS1 domain superfamily	GENE3D	2.30.180.10	FAS1 domain	coord: 51..190 e-value: 2.3E-19 score: 72.1
IPR036378	FAS1 domain superfamily	SUPERFAMILY	82153	FAS1 domain	coord: 250..418
IPR036378	FAS1 domain superfamily	SUPERFAMILY	82153	FAS1 domain	coord: 48..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..236
None	No IPR available	PANTHER	PTHR32499:SF5	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17	coord: 16..464
IPR044654	Fasciclin-like arabinogalactan protein 15/16/17/18	PANTHER	PTHR32499	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16	coord: 16..464

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G012940	CmaCh02G012940	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012940.1:exon:2387	CmaCh02G012940.1:exon:2387	exon
CmaCh02G012940.1:exon:2388	CmaCh02G012940.1:exon:2388	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012940.1:five_prime_utr	CmaCh02G012940.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012940.1:cds	CmaCh02G012940.1:cds	CDS
CmaCh02G012940.1:cds	CmaCh02G012940.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012940.1	CmaCh02G012940.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane