CmaCh02G012780.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012780.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein CLT1, chloroplastic
Location	Cma_Chr02: 7492488 .. 7500781 (+)
Sequence length	2042
RNA-Seq Expression	CmaCh02G012780.1
Synteny	CmaCh02G012780.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTCGAACATTGAAGGGAGGAACGCGGGGCATTGTCCAGAGACTACAAGTCCCGAAGGACGAGAACTGAAACTCGTCTCCTTCTCTTCAAATTTCCCGGCCATAAATTCATCCAATATTGTATTATGACCTCATGGACCCGCCGGTTTTCCGCCGGCGCCGACTCATTCGGCGTTTCTTTTCGATTACGGCAACAACCGCGAAGCTTGGCTGAGGTTTCTCACCTCAGCATTTACAGGTACGCTGGTTTACGATCTGGTTGCGGATGTGTAGTTCTACGGGCGCCGAAGCACCGGCGGCTACAGGCGGCGGAGCCGTCGGCAGCGTGGGATCGATCGGAGAGTGGAGAGGAGGATAGGGTGAAGCCTTGTTCGTACGCAGTGGGAGGGCAGAGGGTGGAGGATTTGGCGGAGGGGAATAGCGGTGAGATCTTGGAGAAAATTAGGGCGGAGAAATTGAGGAGAAGTAATCGAACGGTGGAGATTGTGATTGCAGCCGTGTTAACGGTGATTTTCGGTGTGGCCAATCGGGTGCTGTACAAGCTTGCTTTGATTCCCCTGAAGCACTATCCGTTCTTCCTCGCACAGCTCGCCACTTTCGGGTACTTGCCGCCATTTTCTCTCCACCTTTTTCTGCTATTAATCAGTACCACCTAATTTTTCTTCAATTAATTCAAACATAATTACCGTCGGTTTATATTTCCGATATCTGAATTTAATGCTTAGACTTGTGGTTGTTCTTGAAGTTCGTTAGGTTGGGTCATTTCTGGCGATCTCAAATTAAAACCATCATTGTTTTTGCCCTTTAGTTTTCTAGTCCAATAATTGAAGGGGCTGAAGAACAATGTGACGGATGCTTCCTATCCCACGGTTGTTGTGGTGGGCACATCCCCCCACACGCCTCCATTAAATATTTTCCCCCAATTAATAAAATTATTTCATCTAAATTTTTAAAACTTTCCATAATATTTTTAAACATTCAAAATTAAATAAACCCTAATTTTTACTATCGTTTTTTTATTTTTTATTTTGGCGGACAATAGTTAGTATTTTGTAAAAAATAAATAAAATAAAAATACTATTTTTAAGAGTATAAACATTTTTTTTTTAATTTTCATATATTTTTTTAAAGAGTATTAATGTTATTTTTAAAATATGTACCAATTAATTAGTCAATTAATTAGTATACGTAATTAGTAGAGTATTTTTTGACTTTTTAAAAAAGTTTAAAAATTATTTTTGATGTTGTTAAGGGTATTAATAAAAATTTTTAAAAGTTAGAATAGTATTTTTTAAATATTTTTGAAAATTTTTAATTTTTTTATTTTTATTTTTATTTTTATTTATTTATTTATTTTTTTTTTAAGTTTAAGAGGATTTCTACCCTAAAATATGTACCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGAGTATTTTTTTTATTCTTATTTTTGAACTTAATATTTTTAAAGTATTATTTTGTAACAAAGTTCCTACTAAAACTCTGTAGTTGAGTAATTCTAGCCAATAAAAACGGGGGCAGCTTGAAAATAGGTCTCTGGATTCCTTCGCTCACTATCGATACATTTCGTCCTTTCATTAATTATAATCCCTTAAAAACTTTTTTTAAAGAAAAATATTATTAAATTGTTAAAGAAGTCGTTGTGCATTTGTTCATTGTTAGAGAACATTTGCCTAAAGGTAAGAATTTTTTAAGATTCGAAAAAGAAAAAAGGACATATTTTTGTTAGTGAACGTATTCTTTATGATCGAATCGAAGGGATTACTAAGATTCCATGAAACTTTAACGAAAGCTATTATGGGTTTACAAAAAATGAAAGAAAGAAAGGAAAAAATTATTTTTTTTTTGTTCGTCTCTAGAATTCATTATCAATAATAGGCTTTGAAGGTTGACAAAGTGGGCACATATAATGGTGGGGCCAGTTGGGATGTATATCACATATTATATGCCCCTTGTTAATCATCATAGGTGAAACGATATCGTTTCATATTGTCCTTTTCCTATATGTACTTTTCCATTTCCCAGTCACATCCAACAGTCTGTGGCGAGTTTTGCTTCTTTCCTTGTGGTTCTGAGAATGACATATTCGATTTTCGCTTTTCATGTCAATTTCAAATGCTATTGCTGCATTTTATAGGAAGGAAATCCCCATCTTTTTGTATTACTTCATTTGCTTTCTGGTCCCCCAATTAGCATAGTTTTATCATAGTTTGCCCCTCTTTTCCTCTTTTTCTCTTTTTTTCCCCTCCCTCTTATCTTATTTAATAAATGAAAAACAAAAAATTGATGTATCTCTTAGTTTGTTCATTTCTGAGAAATCCGTAAAGCCCATGATAAGCATAGAACAAATTTGCCTTTTCATATTTTCATACTATCACGATTACCCCTTGACATTGACATTTGCTCGACTGTCGTTGAAGATCGCCGGGAGGGAGTTCCATATTAGCTAATTTAGAGAATGGTCATGATTTTATAAGTAAAGAATACATTTTCATTGATATTTAGTACGAGTTGTTTTGAGGAAACCCAAAGCAAAACCACGAGAGCTTAGGCTTAAAATGGACAATATCGTACTAAGTTTTGAGCTTTACTGCGTCATACCCACATTTTATAAGTTTTAAGAAACTCAATAAATCCGACTTTTTTCTGCTGATTATCATAGCAAGGCTGCTGGTTCATTGCATTTGGATTAAATTGATTTCTTTCAATTCTCATCTTTTCAGATATGTAATTGTATACTTCTCCATATTGTATATGCGCTATCACGCTGGCATTGTTACGGATGAGATGCTTTCAATGCCGAAGGCCCCATATCTTGTTGCTGGCCTCTTGGAAGCTCTTGGCGCTGCGACAGGGATGGCAGCTACAGGTAATGCTTTTTCTTAATAAGTCCCTCACTTCTGCAATGTTCTTATTTTTAAGATATCTATGTTAATTTTATATTAAACATAATTTGGTCATAGTCTATCGTTTATTCTTCATTCTTGATTCAAATGGAGGACTTAAAAGATTAAGATTTGTGATTAATTCAAAAATTCATTTAAGATATAACATTTGTGTTTTAATAGTATGTCTGCACTCATTCAAAATGCTTTTTAAGTATATCATTTGTAGTTTAATGATTAATTAGCATTCATTAAAAAATGCCACTTCAAGTATATGATTAGTGTATCTGTTGTTTATAATACTTATTTAAAATTCCTTTAAATTATAATATTTGTGTTTCAATAATGTATTAAGTGCTTAACCACCATGGGTTGACCTCGGGTCAAGAAAGATCATGTAAATAATAAATGGCTTAATAAGAACGAGTTCAAGCCATGGTGACTACTACCTAAGATCTAATAGCGAGCGCATGAGTACATGTTCACTACTTATATACGAAATATATAATACATTTGGATAAGTTTAGCCCATTTTTAAACATATATAAGTGAAATAGTATTATTGGATTTTTCTTTTTTGAAATGTAGCTAAGATATCTGTAATATGCAAATAAATTATGAACAAGGCTTTTAACTTTTAAAAACAAAAAACAAAATCATCATCAAAAGGGGCCTAAATTTGTTGCATTTTTCTTAGTATTTTCGGATGCTAATTATTTATTGAGTCAGATATCGTGGCATCTGTTATTGTTACAAATTTGTAATTTGTAATTTGAATTCCTTTCAAATAACTCGTTATTTTCCTTTGATCAGCCATTCTTTCTGGTGCATCAACGCCAATTTTGTCTCAGGTAAAGAACAGCGAGCATTTCCCCCTTAATATTAAATCTGTTTCTCGTTTCAAGGACTGCTTGTGCTGAATTAAGTAATGCTATCCTAATAATGGAGCACGTGCATGCTTTCGATTGGATTATTAAACAAACAATAAGCATTCTAGTTATCATGGTTCATTTTGTTTGCAGACTTTTCTTGTGTGGCAGATTCTCCTGTCAATTATTTTTCTTGGGCGGAGGTACAAGACTAATCAACTTTTTGGGTGCTTTCTTGTTTCCATTGGTGTAGTCATCACCGTGGCGAGGTAATTTTCATTATCGGCCATTAGTACTTCTTCAGGCTCGAAGTAACAGTTTTATCTTAATTGTTTATTTCCTGTAATTGTGAACGAACAAGTACTGCGGCTAAACTTTGAGACAGTATTTCTAAAGCTTACGACCGACACGACTTACTTTACTTTAACTGATCAAGTGATGTGCTAAGAAGGATAAATTCAAGGTGGAGAGAGGGATATTAATTATTTAAAAATATTTATGAACTCTTTTGATAAGTGAAGACTTTGCATGTTGCATTCATTGCTGGGACTATGTTGTTCAATGTAATATCTAGTTAATGATGATAATAATAAAATCTTGCAGCTTATTGGCATTGAAGGTCTTTTACTGATGGGTCAGATATGATAGTATGAATTGGGAAGTTGAGCTTACGTGGGGTTATTTATTAACCTCACTGCTTACATGATCTTGAATTTCTAAAAGCAATCTTGTAGCCTACCGACTAACTTCTATTAACGACATATTCATAAACTAAATATGGACTACATAGATCCCTTTTTTTGGATAAGAAACAATTTCGTTGATGATATGAAATTACAAAAGAGGGCAGTGCTCCAATCAATGGACTACACGAAACCTTTCCTATTCGTGAAGAGGGAGTTATAGCATAACTATTGAGCTATCTGATAGTGTTGAAATCACCACCCAAGAGGCAATAATCGGAACATAAATAGGAAAGTTCAGTGAGTTCTTCCCAGAATTGTTGTTTATCCTCTTTTTTTTGTGGGTCCAATATGCCTGTCAGCCAAAGAGAGGATCCATCAGCAAGTTAGATGAGAAGACTTTAAAGAAAAAACACCTTTAGTGATCTCTGAAACCTAGTAAGCTGGATCATCCACAAGATGATGATTCACACCGAGACTCCTATGGAATCAAGCACAGTCCAACCAACATCATTGCCACTTCAAATAGATTTGATGAAAAAACGATCAACCCTAGCAACCTTCATTTCTTGGAGAATAACAATTGAAGGATTGTATATGATTATGGCACTTTTGATGAGTGTCTTTTTCTCGCCATCACCCAATCCTCTAGCGTTCCAGGAGAGAATAATCATGTAGCATCAATCGACCCACCCATGCTTTTAGAAGAGGAAGGTTTGTCATAGTTTAATTTGGATTATAAACTGTTTCCTCTTTTGTTTGTCAAAGCTCATTCTTGTGCATAATCCAATCATAAAGTTAGACTTTCCAACGTTAGATTATACGAACATAGGTTCCCGAACTTGCGAATAGAATTTTGACGAAAGATGTTTCCTTGTACTATTAACTAGTAACTTTTTGTTTCTATAGTTGAATGAGTATTCTTCCATCCTTAGCATGTCTACATGATCATTCTTTACTATTGATGCATGGGAATGCTTTCATCACTTTCATCTGGTTAAGCAGGCAGAATTTTTGCTTGTAACCACTTTGCTTGCACGAATTATGTTGTAAGATCATACATTCTGTTTTCCCAAAAGTTTTTTTTGCTGGTCTGTATCTGCAGTGGTTCCAACGCTGGAAATTCCCTGAAGGATGCCGGTATATTTTGGAGCATTTTGATGATAATCTCATTCTTGTTCCAAGCAGCTGATACTGTTTTGAAGGTAGTTTGTGGCAAAATAATAGTTGGTTTCCCTGTTGAATTCGCCTGTTGTTTATTTAACAATGAAAATTTTTATATGTAGGAAATCATCTTCTTGAATGCTTCCCGTCAATTGAAGGTAAGAAACAATTATCTGCCTGATTACATTTTTAAAGAAAGTTTTATCTAGTCTGATCATTAAAATCAAGAGTAGAAGACTGTTTTGTAAACCTATCTTTATCTGAAAATTAGACAGAAAACTGGCCTTATGTTTAAACCAATTTAAAAATGCATGCTGCTTGAGTACATTTATGCATATTTCATATAGTTGGATTATCGATGCGTCCATCCTTAATGCTTGGAGTAAAATTCCTATTTGAATTGCTTCTGTGCAGGGCAGGACGATGGACTTATTTGTCGTAAATTCCTTTGGATCTGCTTTCCAGGTAGATACATCTATTCTTGATCCCAAATTTCTTTTCTTCTTTCTATTGTAAATTGAAGATTAAGGAGTTTTGTTTCATGTCAACTGCAGTCAATTTTCGTAGTGGCTCTCCTACCATTCCTGTCGAAGTTATGGGGCATTCCATTTAGTCAACTGCCAAGTTATCTTAGAGATGGCACGGCCTGTTTTCTGAATTATGGTACTTTAAGTGGTAAGTTTGTCTTCATCTCTCACATGTTTCAATTATGGTCTGTTCAAGGGAGCAGAGAATTGATAGTTTTGCATGATGATGCGAGCTTGGACTTTCAAATGCGGTGTTTTTTTAGACACTAAAAGGATTTTCTGTTCACAGGATGTGATGGTGCACCACTGCTACCTCTTCTTTTTATTCTTGTAAATATAGGGTTTAACATTTCATTGTTGCATCTCCTCAAGATCTCATCCGCTGTGGTTTCTTCTTTGGCATCCACTTTTTCAGGTACTTCCTCACTTCTCTACCCATCCTCATGTTACTTTTGCTTATTCTAAAGAGTCCAACAGCACTATAAGAAATTGACTATGTTCTTGTAACAGCTTAAACCCACCGCTAGTAGATATTGTCCTTTTTGGACTTTCCCTTTCGAGTTTATCCTTAAGGTTTTTAAAATGCATCTACTAGGGAGAGGTTTCCATACCCTTATAAACAATGTTTCGTTCTCCTTCCCAACTGATATGGGATCTCACAAGCCACCCCATTCGGGGCCCAACGTCCTCGCTGGTACTTGTTCTCTCCTCCAATCAATGTGGGACTCCCCAATCCATCCTCCCAGCATCTTTGTTGGCCTCTGCCTCGTGTCCACCTTCCTTTGGGGCTTGGCCTTCTCACTGGCACATCGCCCGGTGTCTATCCCTACTACCATTTTTAACAGCTCAAGTCCACTGCTAGTAGATATTGTGTTATTTGAGCTTTCCCTTTTGAGGTTCCCTTCAAGGTTTTTAAAATGTGTCTACTAGGGAGAAATTTCCACATCTTATAAATAATATTTTGTTCTTCTCCCCAATCGATGTGGGATCTCACAGTTCTTCTCTAGTAAAATCTCCATTCATTTCTATGTGAAGTTGGTCAATCAACTAAACTGACATGTGCAAGTTCTTCCCCTAAATAAGGTGGAAAGACATCTTCAAAGTCTGTATGCTGAATTAGGTCTGTAATCAGCTCTTTCAGCCACGTCTAATCTTCAGCCAACCTTGTTATCTTTGTGAAAGTCACCATCTACTGGCATGTTCCTTGTAGTTTTTATCTACTGGCATGTTCCTTGTAGTTTTTCTCCATTTACAAGTTACTCAGAACGTACACGTCAAAATTCAGCAATGCCATGATTCACCTTTTCCATTCTCGTATATCTTTTCATTTATTTATCGTCAGTAACGTTTTCATTTCCACATAAACAGTGCCAATAGCAGTCTATATGTTCACCTTGCCTCTCCCATACATCGGCGTCGCTTCTGCTCTTCCGAAGGGGTTCGTAGCTGGAGCTGTCATTCTCGTTCTGGGCTTGCTCATCTATGCTTGGACACCATCAGGATCATCAAATCCGAACAATGCTGCCTCCCACGCACCAATCACTTAAAATTGAAGCAAAATATCAGCTTATGCACCGTTGCCACGAAGATGCGCAGTGGAGCTCATATGTGCTACAAGTAAGAATACCGATTTTAGTGAGCAAGAACAACTCGTTCTTCCTGTTCTCTTTCATTCTTCCAATAAAAGGTCCAGTCTGCATTGGTTAAGCTCCATGGCTTAACCACTCGAGCATTGGGTGCAGATTTCCTTGAAGTAGAGGGTCATTTGTAAGTTCATTAGCTTAGCATCATTGAACAGAAAATTTGATAGGCATACAATTAGTGAGCTGGTGATTTCTGAAGCGCAAGCAGTTTAAGGATAATAGACCTTAGAGCTGCTGCGGTGTAGGCACCACAATTTTCCATTTGTGTAGTGGCCTGAGGTTGGGAAATGGGGGCCTTAAAAACTTGTGTAAAGTAAGTCGTTTTGTAATACTAAATCAGTGTTTTATACGTGAATTTCTTGTAGCTGTTAGTTTGTTCCATTCAATCTCCGAACACTTTCGATTCATGTGCGATAAATTCAGTCACGTAG

mRNA sequence

GCCTTCGAACATTGAAGGGAGGAACGCGGGGCATTGTCCAGAGACTACAAGTCCCGAAGGACGAGAACTGAAACTCGTCTCCTTCTCTTCAAATTTCCCGGCCATAAATTCATCCAATATTGTATTATGACCTCATGGACCCGCCGGTTTTCCGCCGGCGCCGACTCATTCGGCGTTTCTTTTCGATTACGGCAACAACCGCGAAGCTTGGCTGAGGTTTCTCACCTCAGCATTTACAGGTACGCTGGTTTACGATCTGGTTGCGGATGTGTAGTTCTACGGGCGCCGAAGCACCGGCGGCTACAGGCGGCGGAGCCGTCGGCAGCGTGGGATCGATCGGAGAGTGGAGAGGAGGATAGGGTGAAGCCTTGTTCGTACGCAGTGGGAGGGCAGAGGGTGGAGGATTTGGCGGAGGGGAATAGCGGTGAGATCTTGGAGAAAATTAGGGCGGAGAAATTGAGGAGAAGTAATCGAACGGTGGAGATTGTGATTGCAGCCGTGTTAACGGTGATTTTCGGTGTGGCCAATCGGGTGCTGTACAAGCTTGCTTTGATTCCCCTGAAGCACTATCCGTTCTTCCTCGCACAGCTCGCCACTTTCGGATATGTAATTGTATACTTCTCCATATTGTATATGCGCTATCACGCTGGCATTGTTACGGATGAGATGCTTTCAATGCCGAAGGCCCCATATCTTGTTGCTGGCCTCTTGGAAGCTCTTGGCGCTGCGACAGGGATGGCAGCTACAGCCATTCTTTCTGGTGCATCAACGCCAATTTTGTCTCAGACTTTTCTTGTGTGGCAGATTCTCCTGTCAATTATTTTTCTTGGGCGGAGGTACAAGACTAATCAACTTTTTGGGTGCTTTCTTGTTTCCATTGGTGTAGTCATCACCGTGGCGAGTGGTTCCAACGCTGGAAATTCCCTGAAGGATGCCGGTATATTTTGGAGCATTTTGATGATAATCTCATTCTTGTTCCAAGCAGCTGATACTGTTTTGAAGGAAATCATCTTCTTGAATGCTTCCCGTCAATTGAAGGGCAGGACGATGGACTTATTTGTCGTAAATTCCTTTGGATCTGCTTTCCAGTCAATTTTCGTAGTGGCTCTCCTACCATTCCTGTCGAAGTTATGGGGCATTCCATTTAGTCAACTGCCAAGTTATCTTAGAGATGGCACGGCCTGTTTTCTGAATTATGGTACTTTAAGTGGATGTGATGGTGCACCACTGCTACCTCTTCTTTTTATTCTTGTAAATATAGGGTTTAACATTTCATTGTTGCATCTCCTCAAGATCTCATCCGCTGTGGTTTCTTCTTTGGCATCCACTTTTTCAGTGCCAATAGCAGTCTATATGTTCACCTTGCCTCTCCCATACATCGGCGTCGCTTCTGCTCTTCCGAAGGGGTTCGTAGCTGGAGCTGTCATTCTCGTTCTGGGCTTGCTCATCTATGCTTGGACACCATCAGGATCATCAAATCCGAACAATGCTGCCTCCCACGCACCAATCACTTAAAATTGAAGCAAAATATCAGCTTATGCACCGTTGCCACGAAGATGCGCAGTGGAGCTCATATGTGCTACAAGTAAGAATACCGATTTTAGTGAGCAAGAACAACTCGTTCTTCCTGTTCTCTTTCATTCTTCCAATAAAAGGTCCAGTCTGCATTGGTTAAGCTCCATGGCTTAACCACTCGAGCATTGGGTGCAGATTTCCTTGAAGTAGAGGGTCATTTGTAAGTTCATTAGCTTAGCATCATTGAACAGAAAATTTGATAGGCATACAATTAGTGAGCTGGTGATTTCTGAAGCGCAAGCAGTTTAAGGATAATAGACCTTAGAGCTGCTGCGGTGTAGGCACCACAATTTTCCATTTGTGTAGTGGCCTGAGGTTGGGAAATGGGGGCCTTAAAAACTTGTGTAAAGTAAGTCGTTTTGTAATACTAAATCAGTGTTTTATACGTGAATTTCTTGTAGCTGTTAGTTTGTTCCATTCAATCTCCGAACACTTTCGATTCATGTGCGATAAATTCAGTCACGTAG

Coding sequence (CDS)

ATGACCTCATGGACCCGCCGGTTTTCCGCCGGCGCCGACTCATTCGGCGTTTCTTTTCGATTACGGCAACAACCGCGAAGCTTGGCTGAGGTTTCTCACCTCAGCATTTACAGGTACGCTGGTTTACGATCTGGTTGCGGATGTGTAGTTCTACGGGCGCCGAAGCACCGGCGGCTACAGGCGGCGGAGCCGTCGGCAGCGTGGGATCGATCGGAGAGTGGAGAGGAGGATAGGGTGAAGCCTTGTTCGTACGCAGTGGGAGGGCAGAGGGTGGAGGATTTGGCGGAGGGGAATAGCGGTGAGATCTTGGAGAAAATTAGGGCGGAGAAATTGAGGAGAAGTAATCGAACGGTGGAGATTGTGATTGCAGCCGTGTTAACGGTGATTTTCGGTGTGGCCAATCGGGTGCTGTACAAGCTTGCTTTGATTCCCCTGAAGCACTATCCGTTCTTCCTCGCACAGCTCGCCACTTTCGGATATGTAATTGTATACTTCTCCATATTGTATATGCGCTATCACGCTGGCATTGTTACGGATGAGATGCTTTCAATGCCGAAGGCCCCATATCTTGTTGCTGGCCTCTTGGAAGCTCTTGGCGCTGCGACAGGGATGGCAGCTACAGCCATTCTTTCTGGTGCATCAACGCCAATTTTGTCTCAGACTTTTCTTGTGTGGCAGATTCTCCTGTCAATTATTTTTCTTGGGCGGAGGTACAAGACTAATCAACTTTTTGGGTGCTTTCTTGTTTCCATTGGTGTAGTCATCACCGTGGCGAGTGGTTCCAACGCTGGAAATTCCCTGAAGGATGCCGGTATATTTTGGAGCATTTTGATGATAATCTCATTCTTGTTCCAAGCAGCTGATACTGTTTTGAAGGAAATCATCTTCTTGAATGCTTCCCGTCAATTGAAGGGCAGGACGATGGACTTATTTGTCGTAAATTCCTTTGGATCTGCTTTCCAGTCAATTTTCGTAGTGGCTCTCCTACCATTCCTGTCGAAGTTATGGGGCATTCCATTTAGTCAACTGCCAAGTTATCTTAGAGATGGCACGGCCTGTTTTCTGAATTATGGTACTTTAAGTGGATGTGATGGTGCACCACTGCTACCTCTTCTTTTTATTCTTGTAAATATAGGGTTTAACATTTCATTGTTGCATCTCCTCAAGATCTCATCCGCTGTGGTTTCTTCTTTGGCATCCACTTTTTCAGTGCCAATAGCAGTCTATATGTTCACCTTGCCTCTCCCATACATCGGCGTCGCTTCTGCTCTTCCGAAGGGGTTCGTAGCTGGAGCTGTCATTCTCGTTCTGGGCTTGCTCATCTATGCTTGGACACCATCAGGATCATCAAATCCGAACAATGCTGCCTCCCACGCACCAATCACTTAA

Protein sequence

MTSWTRRFSAGADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCVVLRAPKHRRLQAAEPSAAWDRSESGEEDRVKPCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRRSNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSILYMRYHAGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSIIFLGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLKEIIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGIPFSQLPSYLRDGTACFLNYGTLSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFTLPLPYIGVASALPKGFVAGAVILVLGLLIYAWTPSGSSNPNNAASHAPIT

Homology

[Close]

BLAST of CmaCh02G012780.1 vs. ExPASy Swiss-Prot
Match: Q058P6 (Protein CLT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT1 PE=2 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.0e-132
Identity = 255/414 (61.59%), Postives = 320/414 (77.29%), Query Frame = 0


Query: 44  SGCGCVVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGN 103
           +G   +VLR+ +  RL   +A  P+ +W+ S  G+ED  K    +YA+GG     +A   
Sbjct: 40  NGAPPIVLRSSRRSRLWLIEAIPPAKSWNGSNDGDEDIKKSDTRNYAIGGTGGHAVA--- 99

Query: 104 SGEILEKIRAEKLRRSNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATF 163
                         + +RT+EIVIAA  T   GV NRVLYKLALIPLK YPFFLAQL+TF
Sbjct: 100 -------------GKDDRTMEIVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTF 159

Query: 164 GYVIVYFSILYMRYHAGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPIL 223
           GYV VYFSILY RY AGIVT EMLS+PK P+L+ G+LE+L  A GMAA + LSG ST +L
Sbjct: 160 GYVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVL 219

Query: 224 SQTFLVWQILLSIIFLGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILM 283
           SQTFLVWQIL SIIFLGRRY+ NQ+ GC LV+ GV+++VASGS A +S KD GI WS+LM
Sbjct: 220 SQTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLM 279

Query: 284 IISFLFQAADTVLKEIIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGI 343
           + SFL Q ADTV+KE+IFL++ ++LKG ++DLFVVNS+GS FQ I +  LLPFLSKLWGI
Sbjct: 280 VFSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGI 339

Query: 344 PFSQLPSYLRDGTACFLNYGT-LSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSS 403
           PF+QLPSY+RDG ACFLN G+ ++GC+GAPLLP++F+++N+ +NISLL L+KISSAVVSS
Sbjct: 340 PFNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSS 399

Query: 404 LASTFSVPIAVYMFTLPLPYIGVASALPKGFVAGAVILVLGLLIYAWTPSGSSN 452
           LAST SVPIAVY FTLPLPY+GVAS LP+GFVAG +ILV+G+L+YAWTPS +++
Sbjct: 400 LASTVSVPIAVYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLYAWTPSTNTS 437

[Close]

BLAST of CmaCh02G012780.1 vs. ExPASy Swiss-Prot
Match: Q8RWL5 (Protein CLT3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT3 PE=2 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 4.7e-130
Identity = 257/459 (55.99%), Postives = 335/459 (72.98%), Query Frame = 0


Query: 1   MTSWTRRFSAG--ADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCVVLRAPKHRR 60
           M + +RRF+ G  A    V      +P+S++ +    I            + L  P  RR
Sbjct: 1   MATTSRRFTTGLFASITSVKSHSANRPQSISLIRRNHIDHR---------LPLIVPSSRR 60

Query: 61  --LQAAEPSAAWDRSESGEEDRVK---PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRR 120
             +QAA    +WD  + G E  +K      YA+G   +    EG+S   +  I  E +  
Sbjct: 61  WIIQAAR---SWDGFDDGAEAEIKKPGAYGYAIGDNEI----EGSSSSTVHVIDGEHV-- 120

Query: 121 SNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSILYMRYH 180
             +T EIVI A +T  FGV NRV+YKLAL+PLK YPFFLAQL+TFGYV VY++ILY RY 
Sbjct: 121 --KTAEIVIWAAVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYR 180

Query: 181 AGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSIIF 240
           AG VTD MLS+PK+P+L+ G+LEAL AA GMAA A LSG ST +LSQTFLVWQI  SIIF
Sbjct: 181 AGTVTDAMLSVPKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIF 240

Query: 241 LGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLKE 300
           LGRRY  NQ+ GC LV++GV+++VASGS A +SL +AG+ W +LM++SFL Q A TVLKE
Sbjct: 241 LGRRYSVNQILGCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKE 300

Query: 301 IIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGIPFSQLPSYLRDGTAC 360
           +IF+++ R+LKG ++DLF+VNS+GSAFQ+I +  LLPFLSKLWGIPF+QL +YL+DG  C
Sbjct: 301 VIFIDSQRRLKGASLDLFIVNSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVC 360

Query: 361 FLNYGTLS-GCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFT 420
           FLN GT++ GCDGAP LPLLF+++NIG+NI+LL LLKISSAVVS LAST SVPIAV++FT
Sbjct: 361 FLNNGTITKGCDGAPFLPLLFVIMNIGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFT 420

Query: 421 LPLPYIGVASALPKGFVAGAVILVLGLLIYAWTPSGSSN 452
           +PLPY+GVAS+LPKGF+ G +ILVLG+++Y+WTP G+++
Sbjct: 421 MPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANS 439

[Close]

BLAST of CmaCh02G012780.1 vs. ExPASy Swiss-Prot
Match: A1L4X0 (Protein CLT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT2 PE=2 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 3.3e-99
Identity = 188/330 (56.97%), Postives = 250/330 (75.76%), Query Frame = 0


Query: 114 SNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSILYMRYH 173
           SNR + IV  +V+ V   VANRVLYKLAL+P+K YPFF+AQL TFGYV++YF+ILY R  
Sbjct: 89  SNRNL-IVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRR 148

Query: 174 AGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSIIF 233
            GIVT+EM+ +PK  + + G LEALG ATGMAA A+L G   PIL+QT+LVWQ+L +++ 
Sbjct: 149 LGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLI 208

Query: 234 LGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLKE 293
           LGRR+  NQ+ GC LV++GVV+ V+SGS A  +L   G  W  +++ S  FQA  +++KE
Sbjct: 209 LGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKE 268

Query: 294 IIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGIPFSQLPSYLRDGTAC 353
            +F +A+++L+G+++D+FVVNSFGS FQ++FV  LLPFLS L GIPF+ LPSYL+DG  C
Sbjct: 269 FVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGC 328

Query: 354 FLNYGT-LSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFT 413
           F N G  +SGCDGAP+LPLL+I  N+ FNISLLHL+KISSA+VSSL    SVP+AVY+ +
Sbjct: 329 FFNTGAKISGCDGAPILPLLYISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMS 388

Query: 414 LPLPYIGVASALPKGFVAGAVILVLGLLIY 443
            PLPY+   S+L   F  G ++LVLGLL+Y
Sbjct: 389 KPLPYLPGGSSLSSNFTMGCIVLVLGLLLY 417

[Close]

BLAST of CmaCh02G012780.1 vs. ExPASy Swiss-Prot
Match: Q9GSB0 (Crt homolog 1 OS=Dictyostelium discoideum OX=44689 GN=crtp1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-20
Identity = 99/356 (27.81%), Postives = 161/356 (45.22%), Query Frame = 0


Query: 114 SNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSI-LYMRY 173
           S  T+ I+I  VL V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++  Y  +
Sbjct: 46  SKETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIF 105

Query: 174 HAGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSII 233
               +  E    P   + + G L+A+     +      SG    +L+Q  + + ++ S I
Sbjct: 106 FTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFI 165

Query: 234 FLGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLK 293
           FL  RY   QL G  LV IG V+T    S  G S      FW+   ++S +  A   V K
Sbjct: 166 FLKERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYK 225

Query: 294 EIIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLP---FLSKLWGIPFSQLPSYLRD 353
           +I F   +       MD++ +  + S +QSIF + L P   +L     + F Q+  ++++
Sbjct: 226 DIGFQAVA------DMDVWYLQYWDSLYQSIFGLFLFPVNNWLPPPATVKFEQILPFMKE 285

Query: 354 GTACFLNYG--------------------------TLSGCDGAPLLPLLFILVNIGFNIS 413
           G  C                               T   C  A ++ +L++ +NI +NI 
Sbjct: 286 GAECLAGINSIIPSYINGTSSFTATSCTYAPDATITCDDCHNAWIVIILYMTINIIYNIF 345

Query: 414 LLHLLKISSAVVSSLASTFSVPIAVYMFTLPLPYIGVASALPKGFVAGAVILVLGL 440
           +L +LK + A V S+A+T  +P+   +F++        S      VAG VI+++GL
Sbjct: 346 ILLVLKHAGATVYSIANTLRLPLTNIVFSIHFIMGSAVSPFSGLSVAGLVIILVGL 394

[Close]

BLAST of CmaCh02G012780.1 vs. ExPASy Swiss-Prot
Match: Q55C66 (Crt homolog 3 OS=Dictyostelium discoideum OX=44689 GN=crtp3 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.4e-19
Identity = 94/362 (25.97%), Postives = 168/362 (46.41%), Query Frame = 0


Query: 110 KLRRSNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYF-SIL 169
           K   +  T+ I+I  +L +I GV N VL K  +I   +Y FFL+Q+  +GY+ ++  ++ 
Sbjct: 45  KKSMTKETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMW 104

Query: 170 YMRYHAGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQIL 229
           Y  Y    V  E  + P+  +++ GLL+A+     +      SG    +L+Q  + + ++
Sbjct: 105 YKMYCTSDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMI 164

Query: 230 LSIIFLGRRYKTNQLFGCFLVSIGVVI----TVASGSNAGNSLKDAGIFWSILMIISFLF 289
            S IFL  RY   QL G  ++  GV++    ++  GS+ GN L     F++   +IS + 
Sbjct: 165 ASFIFLRERYSLFQLGGAAVILGGVIVSLIPSLVGGSSGGNIL-----FYNFFYLISVIP 224

Query: 290 QAADTVLKEIIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLP---FLSKLWGIPFS 349
            A   V K+I F +         MD++ +  +   +QS+F   L P   +L     I F+
Sbjct: 225 GALSNVYKDIAFQSID-------MDVWYLQFWDCLYQSLFGSILFPVNNWLPPPATIKFT 284

Query: 350 QLPSYLRDGTACFLNYGTL------------------------SGCDGAPLLPLLFILVN 409
           ++   +RDG  C     T+                          C    ++ L+++ VN
Sbjct: 285 EIIPSMRDGALCLGGKNTILPIFNGTTSTLAFGSCGINDNFVCDDCHNTWIIVLIYMTVN 344

Query: 410 IGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFTLPLPYIGVASALPKGFVAGAVILVL 440
           I +NI +L +LK + A V S+A+T  +P+    F++        +      VAG ++++ 
Sbjct: 345 IAYNIFILLVLKHAGATVYSIANTVILPLTNIFFSIHFIMGAATTPFSALSVAGLLLILF 394

[Close]

BLAST of CmaCh02G012780.1 vs. TAIR 10
Match: AT5G19380.1 (CRT (chloroquine-resistance transporter)-like transporter 1 )

HSP 1 Score: 474.9 bits (1221), Expect = 7.2e-134
Identity = 255/414 (61.59%), Postives = 320/414 (77.29%), Query Frame = 0


Query: 44  SGCGCVVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGN 103
           +G   +VLR+ +  RL   +A  P+ +W+ S  G+ED  K    +YA+GG     +A   
Sbjct: 40  NGAPPIVLRSSRRSRLWLIEAIPPAKSWNGSNDGDEDIKKSDTRNYAIGGTGGHAVA--- 99

Query: 104 SGEILEKIRAEKLRRSNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATF 163
                         + +RT+EIVIAA  T   GV NRVLYKLALIPLK YPFFLAQL+TF
Sbjct: 100 -------------GKDDRTMEIVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTF 159

Query: 164 GYVIVYFSILYMRYHAGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPIL 223
           GYV VYFSILY RY AGIVT EMLS+PK P+L+ G+LE+L  A GMAA + LSG ST +L
Sbjct: 160 GYVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVL 219

Query: 224 SQTFLVWQILLSIIFLGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILM 283
           SQTFLVWQIL SIIFLGRRY+ NQ+ GC LV+ GV+++VASGS A +S KD GI WS+LM
Sbjct: 220 SQTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLM 279

Query: 284 IISFLFQAADTVLKEIIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGI 343
           + SFL Q ADTV+KE+IFL++ ++LKG ++DLFVVNS+GS FQ I +  LLPFLSKLWGI
Sbjct: 280 VFSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGI 339

Query: 344 PFSQLPSYLRDGTACFLNYGT-LSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSS 403
           PF+QLPSY+RDG ACFLN G+ ++GC+GAPLLP++F+++N+ +NISLL L+KISSAVVSS
Sbjct: 340 PFNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSS 399

Query: 404 LASTFSVPIAVYMFTLPLPYIGVASALPKGFVAGAVILVLGLLIYAWTPSGSSN 452
           LAST SVPIAVY FTLPLPY+GVAS LP+GFVAG +ILV+G+L+YAWTPS +++
Sbjct: 400 LASTVSVPIAVYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLYAWTPSTNTS 437

[Close]

BLAST of CmaCh02G012780.1 vs. TAIR 10
Match: AT5G12170.2 (CRT (chloroquine-resistance transporter)-like transporter 3 )

HSP 1 Score: 466.1 bits (1198), Expect = 3.3e-131
Identity = 257/459 (55.99%), Postives = 335/459 (72.98%), Query Frame = 0


Query: 1   MTSWTRRFSAG--ADSFGVSFRLRQQPRSLAEVSHLSIYRYAGLRSGCGCVVLRAPKHRR 60
           M + +RRF+ G  A    V      +P+S++ +    I            + L  P  RR
Sbjct: 1   MATTSRRFTTGLFASITSVKSHSANRPQSISLIRRNHIDHR---------LPLIVPSSRR 60

Query: 61  --LQAAEPSAAWDRSESGEEDRVK---PCSYAVGGQRVEDLAEGNSGEILEKIRAEKLRR 120
             +QAA    +WD  + G E  +K      YA+G   +    EG+S   +  I  E +  
Sbjct: 61  WIIQAAR---SWDGFDDGAEAEIKKPGAYGYAIGDNEI----EGSSSSTVHVIDGEHV-- 120

Query: 121 SNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSILYMRYH 180
             +T EIVI A +T  FGV NRV+YKLAL+PLK YPFFLAQL+TFGYV VY++ILY RY 
Sbjct: 121 --KTAEIVIWAAVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYR 180

Query: 181 AGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSIIF 240
           AG VTD MLS+PK+P+L+ G+LEAL AA GMAA A LSG ST +LSQTFLVWQI  SIIF
Sbjct: 181 AGTVTDAMLSVPKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIF 240

Query: 241 LGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLKE 300
           LGRRY  NQ+ GC LV++GV+++VASGS A +SL +AG+ W +LM++SFL Q A TVLKE
Sbjct: 241 LGRRYSVNQILGCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKE 300

Query: 301 IIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGIPFSQLPSYLRDGTAC 360
           +IF+++ R+LKG ++DLF+VNS+GSAFQ+I +  LLPFLSKLWGIPF+QL +YL+DG  C
Sbjct: 301 VIFIDSQRRLKGASLDLFIVNSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVC 360

Query: 361 FLNYGTLS-GCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFT 420
           FLN GT++ GCDGAP LPLLF+++NIG+NI+LL LLKISSAVVS LAST SVPIAV++FT
Sbjct: 361 FLNNGTITKGCDGAPFLPLLFVIMNIGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFT 420

Query: 421 LPLPYIGVASALPKGFVAGAVILVLGLLIYAWTPSGSSN 452
           +PLPY+GVAS+LPKGF+ G +ILVLG+++Y+WTP G+++
Sbjct: 421 MPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANS 439

[Close]

BLAST of CmaCh02G012780.1 vs. TAIR 10
Match: AT5G19380.2 (CRT (chloroquine-resistance transporter)-like transporter 1 )

HSP 1 Score: 447.6 bits (1150), Expect = 1.2e-125
Identity = 255/474 (53.80%), Postives = 320/474 (67.51%), Query Frame = 0


Query: 44  SGCGCVVLRAPKHRRL---QAAEPSAAWDRSESGEEDRVK--PCSYAVGGQRVEDLAEGN 103
           +G   +VLR+ +  RL   +A  P+ +W+ S  G+ED  K    +YA+GG     +A   
Sbjct: 40  NGAPPIVLRSSRRSRLWLIEAIPPAKSWNGSNDGDEDIKKSDTRNYAIGGTGGHAVA--- 99

Query: 104 SGEILEKIRAEKLRRSNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATF 163
                         + +RT+EIVIAA  T   GV NRVLYKLALIPLK YPFFLAQL+TF
Sbjct: 100 -------------GKDDRTMEIVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTF 159

Query: 164 G----------------------------------------------------------- 223
           G                                                           
Sbjct: 160 GFRFRFVVSFDDLAFIVFNCWTIFKMSTTTENRKFYSPVYTLAVTVYEIDALDITLGLEE 219

Query: 224 -YVIVYFSILYMRYHAGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPIL 283
            YV VYFSILY RY AGIVT EMLS+PK P+L+ G+LE+L  A GMAA + LSG ST +L
Sbjct: 220 MYVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVL 279

Query: 284 SQTFLVWQILLSIIFLGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILM 343
           SQTFLVWQIL SIIFLGRRY+ NQ+ GC LV+ GV+++VASGS A +S KD GI WS+LM
Sbjct: 280 SQTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLM 339

Query: 344 IISFLFQAADTVLKEIIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGI 403
           + SFL Q ADTV+KE+IFL++ ++LKG ++DLFVVNS+GS FQ I +  LLPFLSKLWGI
Sbjct: 340 VFSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGI 399

Query: 404 PFSQLPSYLRDGTACFLNYGT-LSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSS 452
           PF+QLPSY+RDG ACFLN G+ ++GC+GAPLLP++F+++N+ +NISLL L+KISSAVVSS
Sbjct: 400 PFNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSS 459

[Close]

BLAST of CmaCh02G012780.1 vs. TAIR 10
Match: AT4G24460.1 (CRT (chloroquine-resistance transporter)-like transporter 2 )

HSP 1 Score: 363.6 bits (932), Expect = 2.3e-100
Identity = 188/330 (56.97%), Postives = 250/330 (75.76%), Query Frame = 0


Query: 114 SNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSILYMRYH 173
           SNR + IV  +V+ V   VANRVLYKLAL+P+K YPFF+AQL TFGYV++YF+ILY R  
Sbjct: 89  SNRNL-IVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRR 148

Query: 174 AGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSIIF 233
            GIVT+EM+ +PK  + + G LEALG ATGMAA A+L G   PIL+QT+LVWQ+L +++ 
Sbjct: 149 LGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLI 208

Query: 234 LGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLKE 293
           LGRR+  NQ+ GC LV++GVV+ V+SGS A  +L   G  W  +++ S  FQA  +++KE
Sbjct: 209 LGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKE 268

Query: 294 IIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGIPFSQLPSYLRDGTAC 353
            +F +A+++L+G+++D+FVVNSFGS FQ++FV  LLPFLS L GIPF+ LPSYL+DG  C
Sbjct: 269 FVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGC 328

Query: 354 FLNYGT-LSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFT 413
           F N G  +SGCDGAP+LPLL+I  N+ FNISLLHL+KISSA+VSSL    SVP+AVY+ +
Sbjct: 329 FFNTGAKISGCDGAPILPLLYISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMS 388

Query: 414 LPLPYIGVASALPKGFVAGAVILVLGLLIY 443
            PLPY+   S+L   F  G ++LVLGLL+Y
Sbjct: 389 KPLPYLPGGSSLSSNFTMGCIVLVLGLLLY 417

[Close]

BLAST of CmaCh02G012780.1 vs. TAIR 10
Match: AT4G24460.2 (CRT (chloroquine-resistance transporter)-like transporter 2 )

HSP 1 Score: 363.6 bits (932), Expect = 2.3e-100
Identity = 188/330 (56.97%), Postives = 250/330 (75.76%), Query Frame = 0


Query: 114 SNRTVEIVIAAVLTVIFGVANRVLYKLALIPLKHYPFFLAQLATFGYVIVYFSILYMRYH 173
           SNR + IV  +V+ V   VANRVLYKLAL+P+K YPFF+AQL TFGYV++YF+ILY R  
Sbjct: 89  SNRNL-IVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRR 148

Query: 174 AGIVTDEMLSMPKAPYLVAGLLEALGAATGMAATAILSGASTPILSQTFLVWQILLSIIF 233
            GIVT+EM+ +PK  + + G LEALG ATGMAA A+L G   PIL+QT+LVWQ+L +++ 
Sbjct: 149 LGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLI 208

Query: 234 LGRRYKTNQLFGCFLVSIGVVITVASGSNAGNSLKDAGIFWSILMIISFLFQAADTVLKE 293
           LGRR+  NQ+ GC LV++GVV+ V+SGS A  +L   G  W  +++ S  FQA  +++KE
Sbjct: 209 LGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKE 268

Query: 294 IIFLNASRQLKGRTMDLFVVNSFGSAFQSIFVVALLPFLSKLWGIPFSQLPSYLRDGTAC 353
            +F +A+++L+G+++D+FVVNSFGS FQ++FV  LLPFLS L GIPF+ LPSYL+DG  C
Sbjct: 269 FVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGC 328

Query: 354 FLNYGT-LSGCDGAPLLPLLFILVNIGFNISLLHLLKISSAVVSSLASTFSVPIAVYMFT 413
           F N G  +SGCDGAP+LPLL+I  N+ FNISLLHL+KISSA+VSSL    SVP+AVY+ +
Sbjct: 329 FFNTGAKISGCDGAPILPLLYISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMS 388

Query: 414 LPLPYIGVASALPKGFVAGAVILVLGLLIY 443
            PLPY+   S+L   F  G ++LVLGLL+Y
Sbjct: 389 KPLPYLPGGSSLSSNFTMGCIVLVLGLLLY 417

The following BLAST results are available for this feature:

BLAST of CmaCh02G012780.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q058P6	1.0e-132	61.59	Protein CLT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT1 PE=2 SV=1	[more]
Q8RWL5	4.7e-130	55.99	Protein CLT3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT3 PE=2 SV=1	[more]
A1L4X0	3.3e-99	56.97	Protein CLT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT2 PE=2 SV=1	[more]
Q9GSB0	5.2e-20	27.81	Crt homolog 1 OS=Dictyostelium discoideum OX=44689 GN=crtp1 PE=2 SV=1	[more]
Q55C66	3.4e-19	25.97	Crt homolog 3 OS=Dictyostelium discoideum OX=44689 GN=crtp3 PE=3 SV=1	[more]

BLAST of CmaCh02G012780.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19380.1	7.2e-134	61.59	CRT (chloroquine-resistance transporter)-like transporter 1	[more]
AT5G12170.2	3.3e-131	55.99	CRT (chloroquine-resistance transporter)-like transporter 3	[more]
AT5G19380.2	1.2e-125	53.80	CRT (chloroquine-resistance transporter)-like transporter 1	[more]
AT4G24460.1	2.3e-100	56.97	CRT (chloroquine-resistance transporter)-like transporter 2	[more]
AT4G24460.2	2.3e-100	56.97	CRT (chloroquine-resistance transporter)-like transporter 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013936	Chloroquine-resistance transporter-like	PFAM	PF08627	CRT-like	coord: 120..442 e-value: 1.5E-44 score: 152.4
IPR013936	Chloroquine-resistance transporter-like	PANTHER	PTHR31326	PROTEIN CLT2, CHLOROPLASTIC	coord: 53..452
None	No IPR available	PANTHER	PTHR31326:SF3	PROTEIN CLT1, CHLOROPLASTIC	coord: 53..452

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G012780	CmaCh02G012780	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012780.1:exon:2330	CmaCh02G012780.1:exon:2330	exon
CmaCh02G012780.1:exon:2331	CmaCh02G012780.1:exon:2331	exon
CmaCh02G012780.1:exon:2332	CmaCh02G012780.1:exon:2332	exon
CmaCh02G012780.1:exon:2333	CmaCh02G012780.1:exon:2333	exon
CmaCh02G012780.1:exon:2334	CmaCh02G012780.1:exon:2334	exon
CmaCh02G012780.1:exon:2335	CmaCh02G012780.1:exon:2335	exon
CmaCh02G012780.1:exon:2336	CmaCh02G012780.1:exon:2336	exon
CmaCh02G012780.1:exon:2337	CmaCh02G012780.1:exon:2337	exon
CmaCh02G012780.1:exon:2338	CmaCh02G012780.1:exon:2338	exon
CmaCh02G012780.1:exon:2339	CmaCh02G012780.1:exon:2339	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012780.1:five_prime_utr	CmaCh02G012780.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_2	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_3	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_4	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_5	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_6	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_7	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_8	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_9	CDS
CmaCh02G012780.1:cds	CmaCh02G012780.1:cds_10	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012780.1:three_prime_utr	CmaCh02G012780.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G012780.1	CmaCh02G012780.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane