CmaCh02G011300.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G011300.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr02: 6694126 .. 6694888 (+)
Sequence length	234
RNA-Seq Expression	CmaCh02G011300.1
Synteny	CmaCh02G011300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTATGATGTCAGTGGCAGGTACGTAGGGTTGGACGTTGAATTTGATCCATTCTTCTGCGAAATTTGGCTTTACTAAGCGGGGGATTTGATCATTGGGGACTGTGATGGTTACTGAGATGCGCGTATGAGCGAAAGCTCTTAAGATGTCCGGATTGGCATCGAACAGTCTGATGCGGCCGATAATGGTGGAATCCAAGAGGAATTCCGCAACCTTAGACGGCAGAGGGAGGTTGTCAGCCAACGTGCCGTAATTGACTCCGATGGATCCACCTTTAGCTGATGAACAAATGAAAGGTAATTGAAATTGGGAAGCTGAGATAACAATGAACAGACAGATAATCACATAATACCGTGTGCCATTTAATTACCTTGCATTTGGAGGAGTGTAGGGAGAAGAAGAAGAAGCAAAGTCACAGCAATTGAAGTGTAAGCACGAAGAAGGCGCGAGAGAGCGAAAGAGGAAGCCATTGGTGAAGAAAGCGAGAAGAGTGAATTGAGGGTGGCATTGGCCATTGCTGAAGAAGTAACATTTTGATGCTTTGCTTTGCGATTGGGGAGAATCGTATGTTCTTGGTAATACATTTCAAGCTTGTTTTTCTTAGAGAGCTTTATTTGCTTTTGAATCTGTTCTCTATTAATTTCTCTTTTTTTTTCTTCCCCTTTTAGTAATAAATGACAAAATCTGTGCTTGTTTTGATGTGTTCAAGTATATTAATATTAGGGTTTTTTTTTAAAATGTTTGATTGATAGAATAAGTGA

mRNA sequence

ATGCGTATGATGTCAGTGGCAGATGTCCGGATTGGCATCGAACAGTCTGATGCGGCCGATAATGGTGGAATCCAAGAGGAATTCCGCAACCTTAGACGGCAGAGGGAGGTTGTCAGCCAACGTGCCGGAGAAGAAGAAGAAGCAAAGTCACAGCAATTGAAGTGTAAGCACGAAGAAGGCGCGAGAGAGCGAAAGAGGAAGCCATTGGTGAAGAAAGCGAGAAGAAATAAGTGA

Coding sequence (CDS)

ATGCGTATGATGTCAGTGGCAGATGTCCGGATTGGCATCGAACAGTCTGATGCGGCCGATAATGGTGGAATCCAAGAGGAATTCCGCAACCTTAGACGGCAGAGGGAGGTTGTCAGCCAACGTGCCGGAGAAGAAGAAGAAGCAAAGTCACAGCAATTGAAGTGTAAGCACGAAGAAGGCGCGAGAGAGCGAAAGAGGAAGCCATTGGTGAAGAAAGCGAGAAGAAATAAGTGA

Protein sequence

MRMMSVADVRIGIEQSDAADNGGIQEEFRNLRRQREVVSQRAGEEEEAKSQQLKCKHEEGARERKRKPLVKKARRNK

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh02G011300.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011300.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G011300	CmaCh02G011300	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G011300.1:exon:1221	CmaCh02G011300.1:exon:1221	exon
CmaCh02G011300.1:exon:1222	CmaCh02G011300.1:exon:1222	exon
CmaCh02G011300.1:exon:1223	CmaCh02G011300.1:exon:1223	exon
CmaCh02G011300.1:exon:1224	CmaCh02G011300.1:exon:1224	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G011300.1:cds	CmaCh02G011300.1:cds	CDS
CmaCh02G011300.1:cds	CmaCh02G011300.1:cds_2	CDS
CmaCh02G011300.1:cds	CmaCh02G011300.1:cds_3	CDS
CmaCh02G011300.1:cds	CmaCh02G011300.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G011300.1	CmaCh02G011300.1-protein	polypeptide