CmaCh02G005370.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G005370.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	mitochondrial outer membrane protein porin 2-like
Location	Cma_Chr02: 2951413 .. 2953699 (+)
Sequence length	1161
RNA-Seq Expression	CmaCh02G005370.1
Synteny	CmaCh02G005370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACTGGTGGTGTAGGGAAAGTGATCGTCTCTTCACTGTAAATTTTATTCTTCAAAATACTTTTAACATTTCTCCATTTTCTCCTCTCCCAATTCTCCTGCGGATCTTCTTTCCCTCCCTTCCTCTCTCGTTTCTCTCTGCAATTCCGATCCCAAGATGAGCAAGGGGCCTGGTCTTTTCTCCGACATCGGCAAGAAGGCTAAAGGTATTCTTCTTATTCTTCCGTCTCTCTAGATTTACATTGAAGCAAGATTGATGATCATTACTGTTTTCTTTTTTCAGATCTTCTGACGAGGGACTACATCTCGGATCAGAAGTTCTCTGTTTCTACTCATAGCGATGCTGGAGTGGTATGAATCCTGCACTTTTTTTTTTTTTTTTTCCATTTCTCTGTGCCATGATGCGAAACGTCTAGGTCCTTAATTAAGCTTCCCAATGTTATTGCATTGGATTTGCTTTTTTTTTTTTTTTTGCAATTGTATTCTGTTGTGTAATGATGTGGTAGCTTTAAATTGTCCTTGAAGTGATTCTGCCTCCGAGTGCTTGGGCTAATTGTGCGATTATACTGTTTGTCTTATTTTCGTTTTGAATTGGATCAATATTCGGCAGTTGATTCATAGAATTTTCCCTGGCAAATGTTGGCGGACCTTTACGGCAGATATGTCTGGTAGGATCTACTCGCAATGGCTATCTGCAATGTTGCTGGATTTTTGTTAAGTTGAAAGATTTTGAACAAGACATTTTATAACCTTACCTTTTTCATTTTTTCTGTCTGTTGGTGCTATTTCAGGCTTTCAGTTGTTATATGTTGTTATTGCGCTATTGTATTTAGGTTTTACCTTATCTAAGTTCTGCTCTTATTGTCTTGTGTTCTTCCTCCAAACTTCAAGTGTTCTATGAATCCTCTCTACCTTGAATTATATGATAATATCTTTGAAGCTGAAATCATAGTTTTGAGTCGTTTGATGTATGCCATGAGTGAGCCTTTCCTCTGTAGATTCCATCCCCAATTGCTAGTGCATGTTAGTTTGTTGAATTATGGAGTGACTTCATGTCAAGTTATATTAATTTATTGTATTCTTCGTCTTATAGGTCCTCACATCAACCGCAGTGAAGAAAGGGGGACTTTCATCTGGGGATGTTGCAGCATTATACAAGTACAGAAATGTTACATTTGATGTTAAAGTTGATACAGCATCAAATGTGAGTTGTTCTGCTTCCTCTCTCGTACTATTCTATATCTTTTTCTGGGTTTGGTTCATGCTACACATCCTCGCGTTTTTCATATTTATCCATTCTTTTGTTTTTCTCAGATATCTACTATCATCACATTGAATGATATTGTCCCATCAACTAAGACTATTGCTTCAGTCAAGTTCCCTGATCATAACTCTGGCAAGGTAAAGTGGAGGATTCTTTTCATTTGAGTGTAGATCTTTCTTAAATTTTAAATGGAATGTATCTCATTTTTTCCTTCTTGCTGCAGCTGGAGGTTCAGTATTTCCACCATCACGCAACCCTAGCAACTGCAGTTGCCTTGAATCAAAACCCCTTCATTGATGTTTCTGCCACTCTTGGTACTCCAAGCATCGCCTTTGGTGGAGAAGCTGGTTATGACACCACGTCTGGTAACTTTACGAAATATACTGCTGGCATTAGCGTGACAAAACCTGATTCGTCTGCATCGATAATCTTGTAAGATATCATTCCCACTGGATGAAAATCACTTTTGTGAAATCTACAACTGCTTTACTATGTTGGATCTGTTGCACGCTCTAATTCATGGCTTCTCCTCCCTATTCATAGAGGTGACAAGGGGGATTCTATAAGAGCTTCTTACGTGCACCATTTGGATCAGCTCAAAAGGAGTTCCGCAGTGGGAGAGATTACACGAAGATTCTCGACGAACGAGAATACTTTCACGGTAGGAGGGTCGATTGCTGTTGATCATCTGACAGTGGTGAAGGCAAAGCTGAACAACAATGGGAAGCTTGGGGCACTCATCCAGCATGAAATTATTCCAAAATCTTTGTTGACCATCGCTGGTGAGATTGACACCAAGGCTTTGGACAGAATTCCCAAGTTTGGTTTGGCCGTTGCTCTCAAGCCATAATTGTTGAGAACTTCTTTGTGAAAAGCATTCAAATTCTTGCGTTGCTCGAGAAAACGAGCACTCAGTAAGTAGCTCCCACACATTCATTTTTTTAGGCGCTCTAACACTGGATTGTCTGTACTTTCATTTTCCACTCTTCTATTTTGTTCGTTTTTCCTTTTTAGAATTGTGAG

mRNA sequence

GGAACTGGTGGTGTAGGGAAAGTGATCGTCTCTTCACTGTAAATTTTATTCTTCAAAATACTTTTAACATTTCTCCATTTTCTCCTCTCCCAATTCTCCTGCGGATCTTCTTTCCCTCCCTTCCTCTCTCGTTTCTCTCTGCAATTCCGATCCCAAGATGAGCAAGGGGCCTGGTCTTTTCTCCGACATCGGCAAGAAGGCTAAAGATCTTCTGACGAGGGACTACATCTCGGATCAGAAGTTCTCTGTTTCTACTCATAGCGATGCTGGAGTGGTCCTCACATCAACCGCAGTGAAGAAAGGGGGACTTTCATCTGGGGATGTTGCAGCATTATACAAGTACAGAAATGTTACATTTGATGTTAAAGTTGATACAGCATCAAATATATCTACTATCATCACATTGAATGATATTGTCCCATCAACTAAGACTATTGCTTCAGTCAAGTTCCCTGATCATAACTCTGGCAAGCTGGAGGTTCAGTATTTCCACCATCACGCAACCCTAGCAACTGCAGTTGCCTTGAATCAAAACCCCTTCATTGATGTTTCTGCCACTCTTGGTACTCCAAGCATCGCCTTTGGTGGAGAAGCTGGTTATGACACCACGTCTGGTAACTTTACGAAATATACTGCTGGCATTAGCGTGACAAAACCTGATTCGTCTGCATCGATAATCTTAGGTGACAAGGGGGATTCTATAAGAGCTTCTTACGTGCACCATTTGGATCAGCTCAAAAGGAGTTCCGCAGTGGGAGAGATTACACGAAGATTCTCGACGAACGAGAATACTTTCACGGTAGGAGGGTCGATTGCTGTTGATCATCTGACAGTGGTGAAGGCAAAGCTGAACAACAATGGGAAGCTTGGGGCACTCATCCAGCATGAAATTATTCCAAAATCTTTGTTGACCATCGCTGGTGAGATTGACACCAAGGCTTTGGACAGAATTCCCAAGTTTGGTTTGGCCGTTGCTCTCAAGCCATAATTGTTGAGAACTTCTTTGTGAAAAGCATTCAAATTCTTGCGTTGCTCGAGAAAACGAGCACTCAGTAAGTAGCTCCCACACATTCATTTTTTTAGGCGCTCTAACACTGGATTGTCTGTACTTTCATTTTCCACTCTTCTATTTTGTTCGTTTTTCCTTTTTAGAATTGTGAG

Coding sequence (CDS)

ATGAGCAAGGGGCCTGGTCTTTTCTCCGACATCGGCAAGAAGGCTAAAGATCTTCTGACGAGGGACTACATCTCGGATCAGAAGTTCTCTGTTTCTACTCATAGCGATGCTGGAGTGGTCCTCACATCAACCGCAGTGAAGAAAGGGGGACTTTCATCTGGGGATGTTGCAGCATTATACAAGTACAGAAATGTTACATTTGATGTTAAAGTTGATACAGCATCAAATATATCTACTATCATCACATTGAATGATATTGTCCCATCAACTAAGACTATTGCTTCAGTCAAGTTCCCTGATCATAACTCTGGCAAGCTGGAGGTTCAGTATTTCCACCATCACGCAACCCTAGCAACTGCAGTTGCCTTGAATCAAAACCCCTTCATTGATGTTTCTGCCACTCTTGGTACTCCAAGCATCGCCTTTGGTGGAGAAGCTGGTTATGACACCACGTCTGGTAACTTTACGAAATATACTGCTGGCATTAGCGTGACAAAACCTGATTCGTCTGCATCGATAATCTTAGGTGACAAGGGGGATTCTATAAGAGCTTCTTACGTGCACCATTTGGATCAGCTCAAAAGGAGTTCCGCAGTGGGAGAGATTACACGAAGATTCTCGACGAACGAGAATACTTTCACGGTAGGAGGGTCGATTGCTGTTGATCATCTGACAGTGGTGAAGGCAAAGCTGAACAACAATGGGAAGCTTGGGGCACTCATCCAGCATGAAATTATTCCAAAATCTTTGTTGACCATCGCTGGTGAGATTGACACCAAGGCTTTGGACAGAATTCCCAAGTTTGGTTTGGCCGTTGCTCTCAAGCCATAA

Protein sequence

MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALYKYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATAVALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGDSIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGALIQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP

Homology

[Close]

BLAST of CmaCh02G005370.1 vs. ExPASy Swiss-Prot
Match: Q9FJX3 (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana OX=3702 GN=VDAC2 PE=1 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 2.1e-109
Identity = 192/276 (69.57%), Postives = 235/276 (85.14%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           MSKGPGLF+DIGKKAKDLLTRDY SDQKFS+ST+S +GV LTSTA+KKGG+ + DVA  Y
Sbjct: 1   MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           KY+N  FDVK+DT S++ T +TL +I+PSTK IAS K PD+NS KLEVQYFH HAT+  A
Sbjct: 61  KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
            AL QNP ID++ATLG+P I+FG EAGYDTTS  FTKY AGISVTKPD+  SIILGDKGD
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180

Query: 181 SIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGAL 240
           S++ASY+HH D+ KR++AVGE+ R+FSTNENT TVGG  A+DH T VKAKLNN+G LGAL
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 240

Query: 241 IQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           +QHE++P+SL+T++ EIDTKAL++ P+FGL++ALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276

[Close]

BLAST of CmaCh02G005370.1 vs. ExPASy Swiss-Prot
Match: Q84P97 (Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica OX=39947 GN=VDAC5 PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.8e-95
Identity = 174/274 (63.50%), Postives = 218/274 (79.56%), Query Frame = 0


Query: 3   KGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALYKY 62
           KGPGLFSDIGK+AKDLLT+DY  DQK +VST S +GV LTSTAVKKGGL + DV+++YKY
Sbjct: 4   KGPGLFSDIGKRAKDLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVSSVYKY 63

Query: 63  RNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATAVA 122
           ++   DVKVDT SNIST +T+ D++PSTK + SVK PD+NSGK+E+QYFH +A+ ATAV 
Sbjct: 64  KSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVG 123

Query: 123 LNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGDSI 182
           +  +P ++ S T G   +AFG EAG+DT +G FTKY+A I VTKPD  A+I+L DKGD++
Sbjct: 124 MKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTV 183

Query: 183 RASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGALIQ 242
           + S V+HLD  ++SS V E+TRR STNENT TVGG   VD  T VKA+LNN GKL AL+Q
Sbjct: 184 KVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQ 243

Query: 243 HEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           HE+ PKS+LTI+GE DTKALDR PKFGLA+AL+P
Sbjct: 244 HEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277

[Close]

BLAST of CmaCh02G005370.1 vs. ExPASy Swiss-Prot
Match: P42055 (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-73
Identity = 143/276 (51.81%), Postives = 190/276 (68.84%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           M KGPGL+++IGKKA+DLL +DY SD KFS++T+S  GVV+TS+  KKG L   DV    
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           K +NVT D+KVDT SN+ T IT+++  P  KTI S + PD  SGKLEVQY H +A + T+
Sbjct: 61  KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
           V L  NP ++ S  +GT  IA G +  +DT +G+FTK  AG+S T  D  AS+ L +KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180

Query: 181 SIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGAL 240
           ++ ASY H +  L  ++   E+   FSTNEN  TVG    +D LT VKA++NN GK  AL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240

Query: 241 IQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           +QHE  PKSL T++GE+DTK++D+  KFGLA+ALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

[Close]

BLAST of CmaCh02G005370.1 vs. ExPASy Swiss-Prot
Match: P42056 (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 1.6e-72
Identity = 138/276 (50.00%), Postives = 191/276 (69.20%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           M KGPGL+SDIGKKA+DLL RDY+SD KF+V+T+S  GV +T++ +KKG L   DV+   
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           K +N+T DVKVDT SN+ T IT+++  P  KTI S   PD  SGK+E+QY H +A + T+
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
           + L  +P ++ S   G  ++A G +  +DT +GNFTK  AG+S +  D  AS+ L DKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 SIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGAL 240
           ++ ASY H +  +  ++   E+T  FS+NENT T+G    +D LT VKA++N+ GK  AL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 241 IQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           IQHE  PKSL TI+GE+DT+A+++  K GLAVALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

[Close]

BLAST of CmaCh02G005370.1 vs. ExPASy Swiss-Prot
Match: P42054 (Outer plastidial membrane protein porin OS=Pisum sativum OX=3888 GN=POR1 PE=1 SV=2)

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-71
Identity = 135/276 (48.91%), Postives = 191/276 (69.20%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           M KGPGL++DIGKKA+DLL +DY SD+KF++ST+S  GV +TS+  KKG L  GDV    
Sbjct: 1   MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           K +N+T D+KVDT SN+ T IT+N+  P  K I S K P+  SGK+E+QY H +A ++++
Sbjct: 61  KNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSS 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
           V L  NP ++ S+ +GT ++AFG +  +DT  G  TK  A ++  K D   S+ L +KGD
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180

Query: 181 SIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGAL 240
            + ASY H ++ L  ++   +I+ RFST ENTFT+G   A+D LT VK ++ N+GK  AL
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240

Query: 241 IQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           IQHE  PKSL+TI+ E+DTKA+++  K GL++ALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276

[Close]

BLAST of CmaCh02G005370.1 vs. TAIR 10
Match: AT5G67500.1 (voltage dependent anion channel 2 )

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-110
Identity = 192/276 (69.57%), Postives = 235/276 (85.14%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           MSKGPGLF+DIGKKAKDLLTRDY SDQKFS+ST+S +GV LTSTA+KKGG+ + DVA  Y
Sbjct: 1   MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           KY+N  FDVK+DT S++ T +TL +I+PSTK IAS K PD+NS KLEVQYFH HAT+  A
Sbjct: 61  KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
            AL QNP ID++ATLG+P I+FG EAGYDTTS  FTKY AGISVTKPD+  SIILGDKGD
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180

Query: 181 SIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGAL 240
           S++ASY+HH D+ KR++AVGE+ R+FSTNENT TVGG  A+DH T VKAKLNN+G LGAL
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 240

Query: 241 IQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           +QHE++P+SL+T++ EIDTKAL++ P+FGL++ALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276

[Close]

BLAST of CmaCh02G005370.1 vs. TAIR 10
Match: AT5G67500.2 (voltage dependent anion channel 2 )

HSP 1 Score: 382.1 bits (980), Expect = 3.8e-106
Identity = 192/303 (63.37%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGV--------------------- 60
           MSKGPGLF+DIGKKAKDLLTRDY SDQKFS+ST+S +GV                     
Sbjct: 1   MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVGTERENEYQDDIYFCLRTRCL 60

Query: 61  ------VLTSTAVKKGGLSSGDVAALYKYRNVTFDVKVDTASNISTIITLNDIVPSTKTI 120
                  LTSTA+KKGG+ + DVA  YKY+N  FDVK+DT S++ T +TL +I+PSTK I
Sbjct: 61  IMSENEALTSTALKKGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEILPSTKAI 120

Query: 121 ASVKFPDHNSGKLEVQYFHHHATLATAVALNQNPFIDVSATLGTPSIAFGGEAGYDTTSG 180
           AS K PD+NS KLEVQYFH HAT+  A AL QNP ID++ATLG+P I+FG EAGYDTTS 
Sbjct: 121 ASFKVPDYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGAEAGYDTTSK 180

Query: 181 NFTKYTAGISVTKPDSSASIILGDKGDSIRASYVHHLDQLKRSSAVGEITRRFSTNENTF 240
            FTKY AGISVTKPD+  SIILGDKGDS++ASY+HH D+ KR++AVGE+ R+FSTNENT 
Sbjct: 181 TFTKYNAGISVTKPDACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTI 240

Query: 241 TVGGSIAVDHLTVVKAKLNNNGKLGALIQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVA 277
           TVGG  A+DH T VKAKLNN+G LGAL+QHE++P+SL+T++ EIDTKAL++ P+FGL++A
Sbjct: 241 TVGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLA 300

[Close]

BLAST of CmaCh02G005370.1 vs. TAIR 10
Match: AT3G49920.1 (voltage dependent anion channel 5 )

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-71
Identity = 147/276 (53.26%), Postives = 182/276 (65.94%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           MSKGPGLF+DIGK AKDLLTRDY +DQKFS+ST+S +GV LTSTA+K G L + +VA  Y
Sbjct: 1   MSKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQY 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           KYRN  FDVK+DT  N+ ++     + P  K ++     DHN+                 
Sbjct: 61  KYRNTFFDVKIDTDFNVKSL-----VYPMNKFVSI----DHNT----------------- 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
                                     GYDTTS  FTKY  G+SVTKPD   SIILGDKGD
Sbjct: 121 ------------------------LTGYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGD 180

Query: 181 SIRASYVHHLDQLKRSSAVGEITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGAL 240
           SI+ASYV++LD+  RS+ VGE+ R+ STNE T TVGG  AVDHLT VKAKLN+NGK GAL
Sbjct: 181 SIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGAL 226

Query: 241 IQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           +QHE +PKS++TI+GEIDTK LD+ P+ GL+++LKP
Sbjct: 241 LQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226

[Close]

BLAST of CmaCh02G005370.1 vs. TAIR 10
Match: AT5G15090.1 (voltage dependent anion channel 3 )

HSP 1 Score: 261.2 bits (666), Expect = 9.7e-70
Identity = 137/277 (49.46%), Postives = 182/277 (65.70%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           M KGPGL+++IGKKA+DLL RDY  DQKFSV+T+S  GV +T+T   KG L  GDVA   
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           K  N T DVKV T S++ T +T ++  P  K I   K PDH SGK EVQYFH +A ++T+
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
           V     P ++ S  +GT  ++ G +  Y+T SGNF  + AG + TK D +AS+IL DKG+
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query: 181 SIRASYVHHLDQLKRSSAVG-EITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGA 240
            + ASY   +     S+ VG EI+  F+T EN  TVG   A+D LT VKA++NN G   A
Sbjct: 181 KLNASYYQIVSP---STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANA 240

Query: 241 LIQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           LIQHE  PKS  T++GE+D+KA+D+  K G+A+ALKP
Sbjct: 241 LIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

[Close]

BLAST of CmaCh02G005370.1 vs. TAIR 10
Match: AT5G15090.2 (voltage dependent anion channel 3 )

HSP 1 Score: 261.2 bits (666), Expect = 9.7e-70
Identity = 137/277 (49.46%), Postives = 182/277 (65.70%), Query Frame = 0


Query: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTHSDAGVVLTSTAVKKGGLSSGDVAALY 60
           M KGPGL+++IGKKA+DLL RDY  DQKFSV+T+S  GV +T+T   KG L  GDVA   
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 61  KYRNVTFDVKVDTASNISTIITLNDIVPSTKTIASVKFPDHNSGKLEVQYFHHHATLATA 120
           K  N T DVKV T S++ T +T ++  P  K I   K PDH SGK EVQYFH +A ++T+
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 121 VALNQNPFIDVSATLGTPSIAFGGEAGYDTTSGNFTKYTAGISVTKPDSSASIILGDKGD 180
           V     P ++ S  +GT  ++ G +  Y+T SGNF  + AG + TK D +AS+IL DKG+
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query: 181 SIRASYVHHLDQLKRSSAVG-EITRRFSTNENTFTVGGSIAVDHLTVVKAKLNNNGKLGA 240
            + ASY   +     S+ VG EI+  F+T EN  TVG   A+D LT VKA++NN G   A
Sbjct: 181 KLNASYYQIVSP---STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANA 240

Query: 241 LIQHEIIPKSLLTIAGEIDTKALDRIPKFGLAVALKP 277
           LIQHE  PKS  T++GE+D+KA+D+  K G+A+ALKP
Sbjct: 241 LIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

The following BLAST results are available for this feature:

BLAST of CmaCh02G005370.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJX3	2.1e-109	69.57	Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q84P97	3.8e-95	63.50	Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica OX=...	[more]
P42055	2.4e-73	51.81	Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum OX=411...	[more]
P42056	1.6e-72	50.00	Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum OX=411...	[more]
P42054	1.7e-71	48.91	Outer plastidial membrane protein porin OS=Pisum sativum OX=3888 GN=POR1 PE=1 SV...	[more]

BLAST of CmaCh02G005370.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67500.1	1.5e-110	69.57	voltage dependent anion channel 2	[more]
AT5G67500.2	3.8e-106	63.37	voltage dependent anion channel 2	[more]
AT3G49920.1	2.3e-71	53.26	voltage dependent anion channel 5	[more]
AT5G15090.1	9.7e-70	49.46	voltage dependent anion channel 3	[more]
AT5G15090.2	9.7e-70	49.46	voltage dependent anion channel 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023614	Porin domain superfamily	GENE3D	2.40.160.10	Porin	coord: 1..275 e-value: 1.7E-80 score: 272.3
IPR027246	Eukaryotic porin/Tom40	PFAM	PF01459	Porin_3	coord: 5..269 e-value: 5.5E-65 score: 219.5
None	No IPR available	PANTHER	PTHR11743:SF53	MITOCHONDRIAL OUTER MEMBRANE PROTEIN PORIN 2-LIKE	coord: 4..276
IPR001925	Porin, eukaryotic type	PANTHER	PTHR11743	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	coord: 4..276
IPR001925	Porin, eukaryotic type	CDD	cd07306	Porin3_VDAC	coord: 5..275 e-value: 4.70494E-83 score: 248.662

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G005370	CmaCh02G005370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005370.1:exon:2520	CmaCh02G005370.1:exon:2520	exon
CmaCh02G005370.1:exon:2521	CmaCh02G005370.1:exon:2521	exon
CmaCh02G005370.1:exon:2522	CmaCh02G005370.1:exon:2522	exon
CmaCh02G005370.1:exon:2523	CmaCh02G005370.1:exon:2523	exon
CmaCh02G005370.1:exon:2524	CmaCh02G005370.1:exon:2524	exon
CmaCh02G005370.1:exon:2525	CmaCh02G005370.1:exon:2525	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005370.1:five_prime_utr	CmaCh02G005370.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005370.1:cds	CmaCh02G005370.1:cds	CDS
CmaCh02G005370.1:cds	CmaCh02G005370.1:cds_2	CDS
CmaCh02G005370.1:cds	CmaCh02G005370.1:cds_3	CDS
CmaCh02G005370.1:cds	CmaCh02G005370.1:cds_4	CDS
CmaCh02G005370.1:cds	CmaCh02G005370.1:cds_5	CDS
CmaCh02G005370.1:cds	CmaCh02G005370.1:cds_6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005370.1:three_prime_utr	CmaCh02G005370.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005370.1	CmaCh02G005370.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0015698	inorganic anion transport
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0008308	voltage-gated anion channel activity