CmaCh02G004630.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G004630.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	binding partner of ACD11 1-like
Location	Cma_Chr02: 2427854 .. 2429986 (+)
Sequence length	1183
RNA-Seq Expression	CmaCh02G004630.1
Synteny	CmaCh02G004630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTTTTGCCATCTGTATTATTTGCGAACCTAAACAACCGCCAAGCCACAACGCACCTCTCAAGGTCATTCTTCCTCTGTCTCTCTCTCTCTCTCTCTCTCGAAGAACTTGGATTTGAAACTTCTCCGGTGGATCAGACGGAGCAGCATGGCGGTTGGTGTTCAATTTTTCCTTCTTTTTCTGTTCATTTTGTTCCTAATCTTTTTGATTTCTGGCGATGTTATTACCTCAAATTTCATTTTGTTGTGAGGCGTGATTTTTTCTTCTTATTAACTACTTAATATAGGTGAAACAGCATGTTTCATTGTTTTTTCCTCCCGTAATTTTGATGAACAAATGCGTGACTCGTACTCAGGAGATGGAGAATGCGTACTTCCGTTGTAATTATGGCTGTATTGGAATTTAATGTTTCGAACAAGAAATAAGGAAATTATTGAAAGCACCTAAAACGTCTAAATTCGTCTTTGATTTTCCAGAAACTGACTTGATTTAGGTTGTTTTTTTGTTTAATCGTTACAGTCGCAGGTGAGAACGGTGAGAGTTACCAATGTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGTAAGTGTTATTTACTACTGTCTCGAAATTGTATTTTAGTTCGTTAGGTATATGGTGATTAGCAGTAGGATTGTTACTTTTTTCTTCTTGATCAACTGTTAGTTCGTATGCGTTTTCATTTACTTCATTTTGTTTTCTTGCAGGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCAGAAAGGAGCCGAGACATCGATTCTACTCTCGGTTGATACAATTCTCTATTCTTCCCTTTCTTCATTTCAATTGTCCGTAAACTTAAGATATTCTGAATTAGAAACTGTTTACTTAAGCTTCCATTAGAAACTGTTTCAGGAATGTAGAACCTCTCTTATGTTATGAAATTGGCTCTAAGGTTTGAAAATTACTTAGAACAGAGTTTCATTCTTCAGATAGAAGAGGTTAAACAAAGTTCTCATCCATTTGTTTCGAATGTCTTCAATATGATTGCCGTGATGTGTTCAAAATGCATAGTTAACTTGATTTCTATGTCTCATTACCAAGTGATTTTTTCTTGTTTCATCTGTTTTCTTACCTTGATTAAACTGTCTTGCGTTTCTCAGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTACTGCTCCAGATTACAATCTTCCTGCTGTACCTGCCAGTGCCCCTCTACCAGTGTCTTCTCCAGTATTTTCTTCGATCTTAATCCTACAGTAATTTTCAATCCTGTCTTTCCAATTTCTGACATGAATGAACAAACATGTTTCACCAGTCTGCAGAGAACGCAGGCTCTGGTACTGCTGGATCTGCAATGCAAAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCTAAAGGCTTCACTTTGGGCAAAGATACCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCGAAAGTCCTTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAGATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCTGCGGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACCCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCTAAACAAGAGGGAAGATCTTAATTCATCCAAGAATCGCTGCAAGTCCAAACTTGTGTAGCCCTGATCATACCCCAACATATATATCACATGTATTTGGCCAAAACAATGTGAGGAGTGAGGACCTATTCTTCTTAGCTTGCTATTTTCATCTCGGTTGATTGACATATTTTCAATGCCTTGTTTTAGTTTTTTGTATCAGGGAGTACATAAATAAGCTACATGCTTATGTTGTAATTCAACCGTAAGAAAAACATATATGCTATGTGATTAAGTGTCCAGAAATGATCTTTATAAACATTATTTGCATA

mRNA sequence

CTTTCTTTTGCCATCTGTATTATTTGCGAACCTAAACAACCGCCAAGCCACAACGCACCTCTCAAGGTCATTCTTCCTCTGTCTCTCTCTCTCTCTCTCTCTCGAAGAACTTGGATTTGAAACTTCTCCGGTGGATCAGACGGAGCAGCATGGCGTCGCAGGTGAGAACGGTGAGAGTTACCAATGTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCAGAAAGGAGCCGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTACTGCTCCAGATTACAATCTTCCTGCTGTACCTGCCAGTGCCCCTCTACCAGTGTCTTCTCCATCTGCAGAGAACGCAGGCTCTGGTACTGCTGGATCTGCAATGCAAAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCTAAAGGCTTCACTTTGGGCAAAGATACCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCGAAAGTCCTTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAGATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCTGCGGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACCCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCTAAACAAGAGGGAAGATCTTAATTCATCCAAGAATCGCTGCAAGTCCAAACTTGTGTAGCCCTGATCATACCCCAACATATATATCACATGTATTTGGCCAAAACAATGTGAGGAGTGAGGACCTATTCTTCTTAGCTTGCTATTTTCATCTCGGTTGATTGACATATTTTCAATGCCTTGTTTTAGTTTTTTGTATCAGGGAGTACATAAATAAGCTACATGCTTATGTTGTAATTCAACCGTAAGAAAAACATATATGCTATGTGATTAAGTGTCCAGAAATGATCTTTATAAACATTATTTGCATA

Coding sequence (CDS)

ATGGCGTCGCAGGTGAGAACGGTGAGAGTTACCAATGTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCAGAAAGGAGCCGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTACTGCTCCAGATTACAATCTTCCTGCTGTACCTGCCAGTGCCCCTCTACCAGTGTCTTCTCCATCTGCAGAGAACGCAGGCTCTGGTACTGCTGGATCTGCAATGCAAAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCTAAAGGCTTCACTTTGGGCAAAGATACCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCGAAAGTCCTTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAGATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCTGCGGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACCCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCTAAACAAGAGGGAAGATCTTAA

Protein sequence

MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLAEDQAKQEGRS

Homology

[Close]

BLAST of CmaCh02G004630.1 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-59
Identity = 138/250 (55.20%), Postives = 184/250 (73.60%), Query Frame = 0


Query: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60
           MASQVR+V+V N+S  A+E D+++FFSFSGE+E +++ + NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSS 120
           +LLSGA+I DQ V I  AP+Y+ PA          +P AE   SG A S +QKAEDVVSS
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQKAEDVVSS 120

Query: 121 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 180
           MLAKGF LGKD + +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++VNEK+K +
Sbjct: 121 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 180

Query: 181 DEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTK 240
           D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA EV  KTK
Sbjct: 181 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 236

Query: 241 EKVLAEDQAK 244
           EKV AE  ++
Sbjct: 241 EKVEAEQPSQ 236

[Close]

BLAST of CmaCh02G004630.1 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-06
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 0


Query: 8   VRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGAT 67
           V VTN+S   +EK + DFFSF G++  +   K  E +Q A + F+     +T++LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAED---VVSSMLAK 127
           +    + I T+ D              ++ + +  G+G   +A Q+ +    ++S +L++
Sbjct: 65  LGQNKIQI-TSEDGG------------AASTTDQGGAGGDQAARQEDKPRSAIISELLSR 124

Query: 128 GFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTV-VNEKVKEMDEK 187
           G+ L   TL ++   DQ + ++S     + S      LS   SV     V EK  E+D K
Sbjct: 125 GYHLSDVTLEKSIQLDQSYGVSSKFKGILES-----ALSGVRSVNERYHVTEKANEVDNK 171

Query: 188 FQVSEK 190
           F +S+K
Sbjct: 185 FAISDK 171

[Close]

BLAST of CmaCh02G004630.1 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 140/247 (56.68%), Postives = 189/247 (76.52%), Query Frame = 0


Query: 7   TVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGA 66
           TV+V+NVSL A+++DL++FFSFSG+I ++E + + ER+++A+VTFKD +GAET++LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKGF 126
           TIVD  V ++ APDY L     ++  P  S  +  AG     S ++KAEDVVSSMLAKGF
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGD----SVLRKAEDVVSSMLAKGF 124

Query: 127 TLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQV 186
            LGKD + +AKS D+KHQLTSTAS+KV S D+KIG ++KI+ GT VV EKV+E+D+K+QV
Sbjct: 125 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 184

Query: 187 SEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKV-LA 246
           SEKTK+A       V+NAG+A+M NRYV TGA+WVT  F +VAKAA EV  K KEKV +A
Sbjct: 185 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 244

[Close]

BLAST of CmaCh02G004630.1 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 241.5 bits (615), Expect = 7.2e-64
Identity = 133/247 (53.85%), Postives = 190/247 (76.92%), Query Frame = 0


Query: 7   TVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLSGA 66
           TV+V+NVSL A+E+DL++FFSFSG+I ++E + +N+ S++A+VTFKD +GAET++LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAKGF 126
           TIVD  V++  +PDY LP    ++   +   +  ++ +    S  +KAEDVVS M++KGF
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 124

Query: 127 TLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQV 186
            LGKD + +AKS D+KHQLTSTAS++V S D++IG +EKI+ GTTVV+EKVKE+D+KFQV
Sbjct: 125 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQV 184

Query: 187 SEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKV-LA 246
           +EKTK+A       V+NAG+A+M NRYV TGA+WVT  F RV+KAA EV  K KEKV LA
Sbjct: 185 TEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKVGLA 244

[Close]

BLAST of CmaCh02G004630.1 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-62
Identity = 138/250 (55.20%), Postives = 184/250 (73.60%), Query Frame = 0


Query: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60
           MASQVR+V+V N+S  A+E D+++FFSFSGE+E ++++  NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSS 120
           +LLSGA+I DQ V I  AP+Y+ PA          +P AE   SG A S +QKAEDVVSS
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQKAEDVVSS 120

Query: 121 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 180
           MLAKGF LGKD + +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++VNEK+K +
Sbjct: 121 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 180

Query: 181 DEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTK 240
           D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA EV  KTK
Sbjct: 181 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 237

Query: 241 EKVLAEDQAK 244
           EKV AE  ++
Sbjct: 241 EKVEAEQPSQ 237

[Close]

BLAST of CmaCh02G004630.1 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 231.5 bits (589), Expect = 7.4e-61
Identity = 138/250 (55.20%), Postives = 184/250 (73.60%), Query Frame = 0


Query: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60
           MASQVR+V+V N+S  A+E D+++FFSFSGE+E +++ + NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSGATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSS 120
           +LLSGA+I DQ V I  AP+Y+ PA          +P AE   SG A S +QKAEDVVSS
Sbjct: 61  VLLSGASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQKAEDVVSS 120

Query: 121 MLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEM 180
           MLAKGF LGKD + +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++VNEK+K +
Sbjct: 121 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 180

Query: 181 DEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTK 240
           D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA EV  KTK
Sbjct: 181 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 236

Query: 241 EKVLAEDQAK 244
           EKV AE  ++
Sbjct: 241 EKVEAEQPSQ 236

[Close]

BLAST of CmaCh02G004630.1 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-59
Identity = 134/246 (54.47%), Postives = 180/246 (73.17%), Query Frame = 0


Query: 5   VRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLS 64
           VR+V+V N+S  A+E D+++FFSFSGE+E +++ + NE S  A+VTFK+ +GAET++LLS
Sbjct: 3   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETAVLLS 62

Query: 65  GATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAK 124
           GA+I DQ V I  AP+Y+ PA          +P AE   SG A S +QKAEDVVSSMLAK
Sbjct: 63  GASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQKAEDVVSSMLAK 122

Query: 125 GFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKF 184
           GF LGKD + +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++VNEK+K +D+ F
Sbjct: 123 GFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNF 182

Query: 185 QVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVL 244
           QV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA EV  KTKEKV 
Sbjct: 183 QVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVE 234

The following BLAST results are available for this feature:

BLAST of CmaCh02G004630.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	1.0e-59	55.20	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	2.3e-06	27.96	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of CmaCh02G004630.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	2.9e-65	56.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	7.2e-64	53.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	3.0e-62	55.20	binding partner of acd11 1	[more]
AT5G16840.1	7.4e-61	55.20	binding partner of acd11 1	[more]
AT5G16840.3	6.9e-59	54.47	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 e-value: 4.9E-10 score: 49.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..68 e-value: 1.8E-8 score: 34.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..80 score: 12.782055
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..76 e-value: 7.3E-12 score: 47.1
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 4..245
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 4..245
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G004630	CmaCh02G004630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004630.1:exon:2663	CmaCh02G004630.1:exon:2663	exon
CmaCh02G004630.1:exon:2664	CmaCh02G004630.1:exon:2664	exon
CmaCh02G004630.1:exon:2665	CmaCh02G004630.1:exon:2665	exon
CmaCh02G004630.1:exon:2666	CmaCh02G004630.1:exon:2666	exon
CmaCh02G004630.1:exon:2667	CmaCh02G004630.1:exon:2667	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004630.1:five_prime_utr	CmaCh02G004630.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004630.1:cds	CmaCh02G004630.1:cds	CDS
CmaCh02G004630.1:cds	CmaCh02G004630.1:cds_2	CDS
CmaCh02G004630.1:cds	CmaCh02G004630.1:cds_3	CDS
CmaCh02G004630.1:cds	CmaCh02G004630.1:cds_4	CDS
CmaCh02G004630.1:cds	CmaCh02G004630.1:cds_5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004630.1:three_prime_utr	CmaCh02G004630.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G004630.1	CmaCh02G004630.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding