CmUC11G216740.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC11G216740.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	CmU531Chr11: 25127664 .. 25129009 (+)
Sequence length	387
RNA-Seq Expression	CmUC11G216740.1
Synteny	CmUC11G216740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATAAAAGGAATGAGGGAAGCTCTAATAGAAAACTATTGGAAGGGGAAAATAGGTTTGAGTCAATGACTAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAATGGATTCAATGCTGACTTTGATGGGGATCAAATGGTTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCCTTTTCTACATCAACTCAAGACATGGTTATTGGACTCTATGTATTAGCAAGTGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATTCATCTAATCGCAAAAATCATATAATGAAAAAAATTACAATAATAACTATAAATATACGAAAGAACTTTTTTTCTGTAATTCCTATGATGCAATTGGAGCTTATTGCTATAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCAACGGCGACTAGATCAAGAAATGTGATTGCTTCAAGAGAAGCCCCCTATCGAAGTTCATTGTGAATCTTTGGGTACCCATCATGAGATTTATGGGTCTTATCTAATAGTAAAAAGTATTAAATAAAAATAACAATAAACGAAATTCTTTGTATATACATTCAAACCACTGTTGATCATATTTCTCTTTATCAAGAAATCGAAGAGGCTATACAAGAATTTTGTCGAGCCTGCTCATATGGTACCTAATCTTCTGGCGTTTCACTCAGCTAAGTAATTATATGACACCGGTATGAATTTTGTTCTCTCCAGTTCAACTAGGACCATAGGTCCTGAATTTCTAAGCGAATCAAGATCGAGAAAGTAAGTTTCTAATCATTGACGCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTATTGTTCAGGATTTTCATTACAAAACCAATAAACCAGAAAAATAGGTATTGTTCCTCCAATGATTATAGTACCAAGTACTTCTTGCCAAGTTCTAATATGATCAAAATTTATAAGTAAGCATCTCTTGTAAAATATGAGCAACACCAAATCCTTCTAAAGCCCAAACCTCCATTTCTCCCATCCGTTGTCCACCTTGCTTGGCCCTTCCTCTAAGGGGTTGTTGTGTAACAAGTGCATAATGTTCACTGGAACGTCTGTGTATTTTATCATCAACTTGATGAATTAATTTCAAGATATAAGGCTTTACTATTATAACAAGTTGTTCAAAAGGATTTCTCGTTCTTCCATCAAATATTCTGTTTTTTCCCAGATACTCAGGTTCAAATACCCATGGAATCACTATTTGCTTATTAG

mRNA sequence

ATGTTCAATAAAAGGAATGAGGGAAGCTCTAATAGAAAACTATTGGAAGGGGAAAATAGGTTTGAGTCAATGACTAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAATGGATTCAATGCTGACTTTGATGGGGATCAAATGGTTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCCTTTTCTACATCAACTCAAGACATGGTTATTGGACTCTATGTATTAGCAAGTGGGAATCGCCGAGATACTCAGGTTCAAATACCCATGGAATCACTATTTGCTTATTAG

Coding sequence (CDS)

ATGTTCAATAAAAGGAATGAGGGAAGCTCTAATAGAAAACTATTGGAAGGGGAAAATAGGTTTGAGTCAATGACTAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAATGGATTCAATGCTGACTTTGATGGGGATCAAATGGTTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCCTTTTCTACATCAACTCAAGACATGGTTATTGGACTCTATGTATTAGCAAGTGGGAATCGCCGAGATACTCAGGTTCAAATACCCATGGAATCACTATTTGCTTATTAG

Protein sequence

MFNKRNEGSSNRKLLEGENRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQVQIPMESLFAY

Homology

[Close]

BLAST of CmUC11G216740.1 vs. NCBI nr
Match: YP_009414748.1 (RNA polymerase beta' subunit [Platycodon grandiflorus] >ARR27753.1 RNA polymerase beta' subunit [Platycodon grandiflorus])

HSP 1 Score: 174.9 bits (442), Expect = 4.6e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 12  RKLLEGE----NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPL 71
           R++++G     NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPL
Sbjct: 442 REVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 72  SLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           SLEAQAEARLLMFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR   V
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGISV 552

[Close]

BLAST of CmUC11G216740.1 vs. NCBI nr
Match: QWZ47172.1 (RNA polymerase beta' subunit [Cyclocodon parviflorus])

HSP 1 Score: 174.9 bits (442), Expect = 4.6e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 12  RKLLEGE----NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPL 71
           R++++G     NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPL
Sbjct: 442 REVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 72  SLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           SLEAQAEARLLMFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR   V
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGISV 552

[Close]

BLAST of CmUC11G216740.1 vs. NCBI nr
Match: YP_009567704.1 (RNA polymerase beta' subunit [Nyssa yunnanensis] >QBB87192.1 RNA polymerase beta' subunit [Nyssa yunnanensis])

HSP 1 Score: 174.5 bits (441), Expect = 6.0e-40
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR  +V
Sbjct: 513 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIRV 552

[Close]

BLAST of CmUC11G216740.1 vs. NCBI nr
Match: YP_009698271.1 (RpoC1 [Nyssa ogeche] >QEJ85348.1 RpoC1 [Nyssa ogeche])

HSP 1 Score: 174.5 bits (441), Expect = 6.0e-40
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 457 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 516

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR  +V
Sbjct: 517 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIRV 556

[Close]

BLAST of CmUC11G216740.1 vs. NCBI nr
Match: AQU64813.1 (DNA-directed RNA polymerase beta' subunit [Nyssa sinensis] >AUF33529.1 RpoC1 [Nyssa wenshanensis] >AUF33954.1 RpoC1 [Nyssa sinensis])

HSP 1 Score: 174.5 bits (441), Expect = 6.0e-40
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 457 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 516

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR  +V
Sbjct: 517 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIRV 556

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-42
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRR 115
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR
Sbjct: 513 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy Swiss-Prot
Match: Q2L8Z4 (DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum OX=3635 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-42
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRR 115
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR
Sbjct: 513 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy Swiss-Prot
Match: B1NWE1 (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-42
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRR 115
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR
Sbjct: 513 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy Swiss-Prot
Match: P11705 (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-42
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRR 115
           MFSHMNLLSPAIGDP S  TQDM+IGLY+L SGNRR
Sbjct: 513 MFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRR 548

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy Swiss-Prot
Match: Q06RE0 (DNA-directed RNA polymerase subunit beta' OS=Jasminum nudiflorum OX=126431 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-42
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQP+LVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRR 115
           MFSHMNLLSPAIGDP S  TQDM++GLYVL SGNRR
Sbjct: 513 MFSHMNLLSPAIGDPISIPTQDMLVGLYVLTSGNRR 548

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy TrEMBL
Match: A0A240FG57 (DNA-directed RNA polymerase subunit beta' OS=Platycodon grandiflorus OX=94286 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 12  RKLLEGE----NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPL 71
           R++++G     NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPL
Sbjct: 442 REVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 72  SLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           SLEAQAEARLLMFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR   V
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGISV 552

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy TrEMBL
Match: A0A6J5TVP8 (DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10750 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.9e-40
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEG AICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 190 NRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 249

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDT 117
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRRD+
Sbjct: 250 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRDS 287

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy TrEMBL
Match: A0A1S6PSE8 (DNA-directed RNA polymerase subunit beta' OS=Nyssa sinensis OX=561372 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.9e-40
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 457 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 516

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR  +V
Sbjct: 517 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIRV 556

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy TrEMBL
Match: A0A2H4YLW9 (DNA-directed RNA polymerase subunit beta' OS=Nyssa wenshanensis OX=561373 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.9e-40
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 457 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 516

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR  +V
Sbjct: 517 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIRV 556

[Close]

BLAST of CmUC11G216740.1 vs. ExPASy TrEMBL
Match: A0A5C0Q7Q3 (DNA-directed RNA polymerase subunit beta' OS=Nyssa ogeche OX=16925 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.9e-40
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQAFQPILVEGRAICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 457 NRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 516

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQV 119
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SGNRR  +V
Sbjct: 517 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIRV 556

[Close]

BLAST of CmUC11G216740.1 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-42
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARLL 78
           NR  ++ RLGIQ+FQPILVEGR ICLHPLVC GFNADFDGDQM VHVPLSLEAQAEARLL
Sbjct: 453 NRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLL 512

Query: 79  MFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRR 115
           MFSHMNLLSPAIGDP S  TQDM+IGLYVL SG RR
Sbjct: 513 MFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRR 548

[Close]

BLAST of CmUC11G216740.1 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 11  NRKLLEGE----NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVP 70
           +R L EG+    NR  S+ R+ I   +  ++  R +  +  VCN +NADFDGD+M +HVP
Sbjct: 451 DRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 510

Query: 71  LSLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDT 117
            + EA+ EA  LM    NL +P  G+    STQD +   +++    R+DT
Sbjct: 511 QTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLI---TRKDT 557

[Close]

BLAST of CmUC11G216740.1 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 11  NRKLLEGE----NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVP 70
           +R L EG+    NR  S+ R+ I   +  ++  R +  +  VCN +NADFDGD+M +HVP
Sbjct: 461 DRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVP 520

Query: 71  LSLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDT 117
            + EA+ EA  LM    NL +P  G+    STQD +   +++    R+DT
Sbjct: 521 QTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLI---TRKDT 567

[Close]

BLAST of CmUC11G216740.1 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-08
Identity = 35/112 (31.25%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 12  RKLLEGE----NRFESMTRLGIQAFQPILVEGRAICLHPLVCNGFNADFDGDQMVVHVPL 71
           R L +G+    NR  S+ ++ I   +  ++      L+  V + +NADFDGD+M +HVP 
Sbjct: 448 RHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 507

Query: 72  SLEAQAEARLLMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDTQVQ 120
           S E +AE   LM     ++SP    P     QD ++G   +    +RDT ++
Sbjct: 508 SFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKI---TKRDTFIE 556

[Close]

BLAST of CmUC11G216740.1 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07
Identity = 30/99 (30.30%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 19  NRFESMTRLGIQAFQPILVEG-RAICLHPLVCNGFNADFDGDQMVVHVPLSLEAQAEARL 78
           NR  ++ +  + A +  +++G + + LH   C+ +NADFDGD+M VH P    ++AEA  
Sbjct: 565 NRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYN 624

Query: 79  LMFSHMNLLSPAIGDPFSTSTQDMVIGLYVLASGNRRDT 117
           ++ ++     P+ G+P     QD ++   +L    +RDT
Sbjct: 625 IVNANNQYARPSNGEPLRALIQDHIVSSVLL---TKRDT 660

The following BLAST results are available for this feature:

BLAST of CmUC11G216740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009414748.1	4.6e-40	78.38	RNA polymerase beta' subunit [Platycodon grandiflorus] >ARR27753.1 RNA polymeras...	[more]
QWZ47172.1	4.6e-40	78.38	RNA polymerase beta' subunit [Cyclocodon parviflorus]	[more]
YP_009567704.1	6.0e-40	85.00	RNA polymerase beta' subunit [Nyssa yunnanensis] >QBB87192.1 RNA polymerase beta...	[more]
YP_009698271.1	6.0e-40	85.00	RpoC1 [Nyssa ogeche] >QEJ85348.1 RpoC1 [Nyssa ogeche]	[more]
AQU64813.1	6.0e-40	85.00	DNA-directed RNA polymerase beta' subunit [Nyssa sinensis] >AUF33529.1 RpoC1 [Ny...	[more]

BLAST of CmUC11G216740.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM27	1.7e-42	87.50	DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC...	[more]
Q2L8Z4	1.7e-42	87.50	DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum OX=3635 GN=rpoC1...	[more]
B1NWE1	1.7e-42	87.50	DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 ...	[more]
P11705	2.3e-42	86.46	DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 ...	[more]
Q06RE0	3.9e-42	85.42	DNA-directed RNA polymerase subunit beta' OS=Jasminum nudiflorum OX=126431 GN=rp...	[more]

BLAST of CmUC11G216740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A240FG57	2.2e-40	78.38	DNA-directed RNA polymerase subunit beta' OS=Platycodon grandiflorus OX=94286 GN...	[more]
A0A6J5TVP8	2.9e-40	85.71	DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS...	[more]
A0A1S6PSE8	2.9e-40	85.00	DNA-directed RNA polymerase subunit beta' OS=Nyssa sinensis OX=561372 GN=rpoC1 P...	[more]
A0A2H4YLW9	2.9e-40	85.00	DNA-directed RNA polymerase subunit beta' OS=Nyssa wenshanensis OX=561373 GN=rpo...	[more]
A0A5C0Q7Q3	2.9e-40	85.00	DNA-directed RNA polymerase subunit beta' OS=Nyssa ogeche OX=16925 GN=rpoC1 PE=3...	[more]

BLAST of CmUC11G216740.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	4.0e-42	84.38	DNA-directed RNA polymerase family protein	[more]
AT5G60040.1	1.5e-12	37.27	nuclear RNA polymerase C1	[more]
AT5G60040.2	1.5e-12	37.27	nuclear RNA polymerase C1	[more]
AT4G35800.1	8.4e-08	31.25	RNA polymerase II large subunit	[more]
AT3G57660.1	2.4e-07	30.30	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..109 e-value: 2.5E-7 score: -58.7
None	No IPR available	GENE3D	2.40.40.20		coord: 11..88 e-value: 1.9E-25 score: 91.3
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 20..111
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 20..111
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 19..109
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 19..79 e-value: 8.4E-18 score: 65.1
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 89..127 e-value: 5.3E-8 score: 35.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC11G216740	CmUC11G216740	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC11G216740.1-exon	CmUC11G216740.1-exon-CmU531Chr11:25127664..25128006	exon
CmUC11G216740.1-exon	CmUC11G216740.1-exon-CmU531Chr11:25128966..25129009	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC11G216740.1-cds	CmUC11G216740.1-cds-CmU531Chr11:25127664..25128006	CDS
CmUC11G216740.1-cds	CmUC11G216740.1-cds-CmU531Chr11:25128966..25129009	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC11G216740.1	CmUC11G216740.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding