CmUC11G211240.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC11G211240.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	ATP synthase subunit beta, chloroplastic
Location	CmU531Chr11: 7720174 .. 7724466 (+)
Sequence length	909
RNA-Seq Expression	CmUC11G211240.1
Synteny	CmUC11G211240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCATAGGCGTCTCGACGATCTTGCTCGGACCGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGTTAGAAGGGCCAACTATGTATCAAAATGGCGACTAGCCCTGCTTCCATTTTTCTTTGATTATTAAGGAGTATAAGAAGAGAGCAAAGTTGGAGTAGGGTATGAGAGGGCGTAGCAGTCAAAAACATGATATGTGACGGATTTCTCTTTCGTTATTCCCAACGACGAATTGTCCCGAACAGCTACAACCGAAACACAACGGCTTCCGTGGATGCATCTGTTGTTGATTCAATTGAATGCCAGTCCAGGAGTCGATTCTGATCATGAATGTCGTAGGCGTTAGACTCCTTTTATGCCACCAGGCAGGGAGTTTCATAATAGAACGTCTCCTTCGATCCCCTCTAACAGTGCGTAATTAATTGATCATCTAACACCGCTTGGTCTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCTGAATAAATTAAATACATGCATTAAAATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAACCATGGGCCTCTTCAAGGCATAATGTTGAGAATACCCGTTGAATTGGAAGGAATAAGTTCGACAGCGGATCACGAAATCTTGGCGATCTTCTCTATCTAATGAATGGGAGTCCGCTTTGAAATCGTCCGCCCTGCACCCACCCCCCGAGTATATGCTTCAACAGGAATTAAACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCACCCGTAACCCAGCACGGGAGAATCGATGACTGCATCAAAGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGACCCCGACTGTGGAACAAAGGATTATCCCGGACCTACACCGAGAAAAATGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTTACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTCTCATCTCTTTCAATCACTTCGATTTCTAGCAGTAAACTCTTCCGGGGGGGACGTAAAAAGAGTCCGAGTTCGCTTCATTTCTCATTTTCTTCGCTTCCCAAGATATTTAGGGAAAAGCCCCTTCTTTCAGTACAATAAGGGAGTGCTTTTCTTCCTTTCGTTTAGAATTTCATAAACCTAAATTAAAACTAAACTAAATGATAAATATTATAAATCAAGCGAAATCCAGTAAAGTATTGTACTACAAAACAAAGAATAATTAGATGACTTGGATCAATATCCGGATCCAACTTTTTCGTCACAAATCAAAGAATTCATTTTTGAAGTTTTGAGTTAAGTAAGGCTTTACTTGATTGAATTTTGATTCGAGGGAACAAAAGCGTGGAGCTGAAATAACTCACTCACAACACCTTTTAAAGGATTACGTGGTACGATTAGATCGAATAAGCCCTTATGGAATAAATATTCAGCCGCCTGTGAACCCTCAGGGACTGTCTTATTCAATGTTTGTTCAATTACTCTTTTACCCGCAAATGTGATGTACGATTACGTGAGTTGCTCAAACAATCCCAATCAGCCCCTCTCACGGTAGAAGAACAGATAATGACTATTTATACCGGAACTAATGGTTATCTTGATTCATTAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAAAGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAAGTCAGAACGAATACCGAGACTCCTTTCTTTTACGCCTTATTAGTTATTCAAGCGGATCACTTTGTTTGTAATTGTGAGTATGAAATCCAATTTTTAGTAATCAACGACTCAACTCTTAAAACTTTTTCCTATTTCTAGAAATCATTTCACTGCATTTCTTGGTGTCAAAACAGGTTAAAATAGAGAATCTATTCTCTTTTTTTAAAAAAAAAATGATCTTGGAGATTGTGTCGAACATTTGTCTCTGATTTCCAAGGACAAGCATGAAAAAGTCACCCAAAACGGCATCGTCAATGGCGCCAATCCAATTTATATAACTTCTTGAAAGACTCGATTCAAAAATGCTCCATACCCTCAAACGCGGTACTACTCATTCTCGTTCGATAGGAATTTGATTAAGAAACATTACGAATATAACCACGCGGAGCGCCGGACCGGCCTATCGAAGAAAGAGATCATTAAACCTATTTAGCCGAGCTAAGGTGTGGAACCCTCGTTTTTTAGTCTTTTTTTTTTTATAATAAGCTAAAGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGTTCAGTGCCCTACGTGTCCGGTAACCTGAGGTCGGGCTAACTAATGAAAGTGCAACGCCCGGTTCAGCGATACATTCATCATATTTTCGAGGCGAAGTAAGGGTGAGCTCGACGCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCAATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATTCGATCCATAAATTTTCTTCCCTATGAGTTCGAGTCTCAATAAGAATGCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATCGATACAGAGCCAATTCCAATAGACTTATTGGAGGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGCGCTTTAACCGGAGCTGTTGACAATTGAATCCAATTTTGCCCATTATTTTCATTTTCGTATCCGTAATAGTGCGAAAAGAAGGAAGGCCGTTGGTACGAAAGACGTTCGGAGGTGAATTCGACCTTTGATTGAATCTATTATCAGTGCTGGCAACCGTAGAACCAATGAAAGGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCCCAAAGAAATAGCTTAGTAGCCACATTAGCCGCGCTTGGGATGATTTTAGGCGCGGCGTATTCCTTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCCATAAATTCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAACCCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAGTCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGA

mRNA sequence

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCATAGGCGTCTCGACGATCTTGCTCGGACCGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGTTCAGTGCCCTACGTGTCCGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAACCCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAGTCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGA

Coding sequence (CDS)

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCATAGGCGTCTCGACGATCTTGCTCGGACCGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGTTCAGTGCCCTACGTGTCCGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAACCCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAGTCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGA

Protein sequence

MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRIGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQVPAPEKVVVYFPSGKSLVGKPSSVPYVSVMLRMLRHRIDQPSSRSFPVHSLYISDTQGRTRWEESNPSPCPADHSAGILGQHENYPTSAGTPQIFSASYSVESPVYFLPKRSRKQNTKSVFHAGGGANPFSGPKLFFLETRGRAAVPG

Homology

[Close]

BLAST of CmUC11G211240.1 vs. NCBI nr
Match: ALE29230.1 (ribosomal protein S13 [Heuchera parviflora var. saurensis])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-19
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. NCBI nr
Match: AAX62993.1 (ATP synthase beta subunit, partial [Phyllanthus epiphyllanthus])

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-19
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GAS 
Sbjct: 25  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVID-TGASL 84

Query: 61  MAPRIGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
             P +G ST  LG  F++     ++ G       SP  + A   IQ+  +L I    IK+
Sbjct: 85  SVP-VGGST--LGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKV 143

[Close]

BLAST of CmUC11G211240.1 vs. NCBI nr
Match: AUD38521.1 (ribosomal protein S13 [Deppea grandiflora])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA V  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADVERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. NCBI nr
Match: PHT60924.1 (Ribosomal protein S13, mitochondrial [Capsicum annuum])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. NCBI nr
Match: AUD38493.1 (ribosomal protein S13 [Mostuea sp. NW-2017])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy Swiss-Prot
Match: P05488 (Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-21
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy Swiss-Prot
Match: A0ZZ42 (ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpB PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGL RGM++  +   +A
Sbjct: 40  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEV--IDTGTA 99

Query: 61  MAPRIGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
           ++  +G +T  LG  F++     +  G       SP  K A   IQ+  +L I    IK+
Sbjct: 100 LSVPVGGAT--LGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKV 158

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy Swiss-Prot
Match: Q2L917 (ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpB PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGL RGM++  +   +A
Sbjct: 40  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEV--IDTGAA 99

Query: 61  MAPRIGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
           ++  +G +T  LG  F++     +  G       SP  K A   IQ+  +L I    IK+
Sbjct: 100 LSVPVGGAT--LGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKV 158

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy Swiss-Prot
Match: P08977 (Ribosomal protein S13, mitochondrial OS=Zea mays OX=4577 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQ+RYRLGISGNIKI ELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQLRYRLGISGNIKIHELTKYQIDQIEQMIAQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy Swiss-Prot
Match: Q6QBP2 (ATP synthase subunit beta, chloroplastic OS=Castanea sativa OX=21020 GN=atpB PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-20
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKG+DTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GA  
Sbjct: 40  MPNIYNALVVKGRDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVID-TGAPL 99

Query: 61  MAPRIGVSTI 71
             P +G +T+
Sbjct: 100 SVP-VGGATL 107

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy TrEMBL
Match: A0A0M3TGS7 (Ribosomal protein S13 OS=Heuchera parviflora var. saurensis OX=1708480 GN=rps13 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-19
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy TrEMBL
Match: Q4KU83 (ATP synthase subunit beta (Fragment) OS=Phyllanthus epiphyllanthus OX=256096 GN=atpB PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-19
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GAS 
Sbjct: 25  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVID-TGASL 84

Query: 61  MAPRIGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
             P +G ST  LG  F++     ++ G       SP  + A   IQ+  +L I    IK+
Sbjct: 85  SVP-VGGST--LGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKV 143

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy TrEMBL
Match: A0A2H4WYZ0 (Ribosomal protein S13 OS=Deppea grandiflora OX=43474 GN=rps13 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-19
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA V  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADVERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy TrEMBL
Match: A0A7S9DFZ3 (Ribosomal protein S13 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=rps13 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-19
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. ExPASy TrEMBL
Match: A0A7D7FCM0 (Ribosomal protein S13 OS=Solanum melongena OX=4111 GN=rps13 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-19
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]

BLAST of CmUC11G211240.1 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-19
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1  MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGM 56
          MPNIYNAL+VKG+DT GQEINVTCEVQQLLGNNRVRAVAMSAT+GL RGM +  M
Sbjct: 40 MPNIYNALVVKGRDTLGQEINVTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDM 94

The following BLAST results are available for this feature:

BLAST of CmUC11G211240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ALE29230.1	2.1e-19	86.21	ribosomal protein S13 [Heuchera parviflora var. saurensis]	[more]
AAX62993.1	8.0e-19	56.10	ATP synthase beta subunit, partial [Phyllanthus epiphyllanthus]	[more]
AUD38521.1	1.0e-18	86.21	ribosomal protein S13 [Deppea grandiflora]	[more]
PHT60924.1	1.4e-18	84.48	Ribosomal protein S13, mitochondrial [Capsicum annuum]	[more]
AUD38493.1	1.4e-18	84.48	ribosomal protein S13 [Mostuea sp. NW-2017]	[more]

BLAST of CmUC11G211240.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05488	1.8e-21	84.48	Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPS13 PE=3 ...	[more]
A0ZZ42	2.0e-20	52.85	ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpB...	[more]
Q2L917	2.0e-20	52.85	ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpB P...	[more]
P08977	2.6e-20	81.03	Ribosomal protein S13, mitochondrial OS=Zea mays OX=4577 GN=RPS13 PE=3 SV=2	[more]
Q6QBP2	4.4e-20	74.29	ATP synthase subunit beta, chloroplastic OS=Castanea sativa OX=21020 GN=atpB PE=...	[more]

BLAST of CmUC11G211240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0M3TGS7	1.0e-19	86.21	Ribosomal protein S13 OS=Heuchera parviflora var. saurensis OX=1708480 GN=rps13 ...	[more]
Q4KU83	3.9e-19	56.10	ATP synthase subunit beta (Fragment) OS=Phyllanthus epiphyllanthus OX=256096 GN=...	[more]
A0A2H4WYZ0	5.1e-19	86.21	Ribosomal protein S13 OS=Deppea grandiflora OX=43474 GN=rps13 PE=3 SV=1	[more]
A0A7S9DFZ3	6.6e-19	84.48	Ribosomal protein S13 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=rps1...	[more]
A0A7D7FCM0	6.6e-19	84.48	Ribosomal protein S13 OS=Solanum melongena OX=4111 GN=rps13 PE=3 SV=1	[more]

BLAST of CmUC11G211240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	1.3e-19	83.64	ATP synthase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 1..50 e-value: 1.8E-10 score: 41.2
None	No IPR available	GENE3D	1.10.8.50		coord: 98..143 e-value: 5.8E-6 score: 28.4
None	No IPR available	GENE3D	2.40.10.170		coord: 1..57 e-value: 4.3E-17 score: 64.0
None	No IPR available	PANTHER	PTHR10871:SF38	RIBOSOMAL PROTEIN S13	coord: 97..155
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 97..155
None	No IPR available	CDD	cd18115	ATP-synt_F1_beta_N	coord: 1..50 e-value: 5.50167E-22 score: 85.6462
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 98..155 score: 10.972571
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 1..54

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC11G211240	CmUC11G211240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC11G211240.1-exon	CmUC11G211240.1-exon-CmU531Chr11:7720174..7720430	exon
CmUC11G211240.1-exon	CmUC11G211240.1-exon-CmU531Chr11:7722909..7723198	exon
CmUC11G211240.1-exon	CmUC11G211240.1-exon-CmU531Chr11:7724105..7724466	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC11G211240.1-cds	CmUC11G211240.1-cds-CmU531Chr11:7720174..7720430	CDS
CmUC11G211240.1-cds	CmUC11G211240.1-cds-CmU531Chr11:7722909..7723198	CDS
CmUC11G211240.1-cds	CmUC11G211240.1-cds-CmU531Chr11:7724105..7724466	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC11G211240.1	CmUC11G211240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome