CmUC11G207610.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC11G207610.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr11: 3963563 .. 3969072 (-)
Sequence length	399
RNA-Seq Expression	CmUC11G207610.1
Synteny	CmUC11G207610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCACCCACTTGCCCGAGAAATGGCCATTTCATCAAGCTCAGAAAAATTTTGGCACCTACATGGTTTGATCACTCTTGGCTGGCTCTGCTTTCTAACCTACAATCTCAGCTCGCATCTGAATTTGAAGCTTACTTCTCTTCAAGTCCCTCCAAGCAGCTGAAGGGTTTGCATTGGCAGCCTCAATCGTCGGCCGCGTAAAATCCTACCTTCTCCGGTCATCTTTATTGACTTATGACTTACTCTTCACTCTCCACTGAGTCAATGGATACAACAAATATGCAGTGTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAAAGTACTTTTGGCCCTCAATTTTTCAAATTAACAATTTAACCCTAATTTTAGTTTATAACAATTTAACAATCAGTAATATTTAGTCTCTCTACTCTATCGTTGGAAAATTATTTTAAATGATGAAATTTTTTTTTATATAAATAAAAAAAAATCAAACTATTTATAAATATAGAAAAATTTCACTGTAAATCAGCGATAGACTATGATAAACTTCTTATGCTGGAGTGATAGAAGTCTATCACAAATAAACAGTAAAAAATTTTTATATTTATAAATAGTTTGGCTCATTTTGCTATATTTGAAAAAAAATCCAATGATAAGACTATTTAAAATATTTACAAATGATAACAAAATATCATAGTTTATCTACAATAGACTACTATCTGTGTCTATTTACTATATGTGTCTATCACACATATAGTGGTTTATCGCAGATAAATAAGTGAAATTTTACTATATTCGTAAATATTTTGGTTCATTTTTCTTATTTGAAAACAACATTTTATAATTTGTAACCATTTCATTCCAATTTTGAAAAAGATTATTATAATTAGTGAAGTTTCTTTACTTGCGTTGATTGATAAATTAAACGAAAATCAAATTTGTTTATAAACTAAGACTAAGAGGGTGTTTAGGCCCCCAACTACAATAATTGGTGTTACCAACTATTATAACCTACCATTAACATATTGGCATTTCAAATTTCTAAATGTTAAGTGTTACTATTTCTTAGTCATCCTCTTTTTTCCTATTACAATGTTTACTATTTTATATTCTACACCCCAAACACAAACTATTATAATCCATATACTATAACAATCAACTTAGCTCCCCAAACACCTCACAAGTTGTTACATAATTAAAATTGACTGAAATTTTTAAAGATAATGACTACATTGCTACAAATTTCAAAGTGTATAGATTAAATTGTAACTTATTAAAGTTAAGGAACTAAACTGTTACAAATTTGAAAGTACATGAATTGAATCGTAATAAGCTAATGTTTAGAAACTAAATTACTACTTTCATGAAATTTCATGGACCAAACGTGTTTTTTAAAACTTTTTTTTTTTCATTTTCGGATAATCCATTTCATAATGCCCGCAAAATTTTGGAATCAACCTCATTGCATACATGTGTTTGTTGGGTTTTATGTCATAAAACTCGTGGTTTGTAAAAATTTCGAACATATTCCCAATAAAGTTGTTATCGAGGTTTATTCAGTAAAGGTGTTATTGAATATGTGAATTGCATTTATTAAATCCAATAAACTAAGAACCCCTGGTTATAGTTTGAATATTTATGTATAGACATAAAAATGGATAAGTTTAGGTAATAGCTAAAACGGTCTATAATATAGGGATAAGACTGGGTACCATATCTTAGGAACACTATGGATGCGACCTACTTTGTATTTGATACAAACGATGCGACCCTATATCGTTCATATAGAGACATGAGAGTGAGGGCATCCTATGTAATGAGTTTGCATAAGACCGAACCATGAAAACTGTTACATTATAACGTCGTTTACTGTTAAGATTGATTATTTGAACATGATGACCTAGGTAACTTCATCTTAATCATGAGCTAACTATGAACTTCTGTTTATTTGGGATTATCCTTAATCTGCATGGGTGAGAGTGGCTCGAGTTCACCAACTCAATAAGTCTTCCATTTTAGGGATAAGACCAAGTTGATAGCTGGGGACATAGTCTTTTAAGATGAAATTCACTCTTACCTTATTTAAGGTTAGTAAAGAAGTTGTTCCCTTAAGTGCCAACTTCAGGTTTTGAACAAGGGTCCCACCTTCTCATTGGAGAGGGATTCGATTTGATGGTTGGACCACAAACTAATTGTTCATTAGAGGATTAATGGGAATTAAGGAATGAGATGTACTTACAGGGGTAAAACGATAATTTTGACCCAATTGTAATTACGAACAACTTGTGAAAGATCGACTTACTAATCATAGTTATATCAAGTGGACAGAAATGTATCTACAATGAGGAGAGTGCATATACTGGGTTATAGTGGAGTGTCCCGGTAGTTAACAAATGTCAATTAATTAACTAGGTTAAAAAGTTTAGTCAAATAATTTCTGATCATTGGAGCTCATGATTTGTAGGTCCATTAGGTCCCATTGTTAGCTCATGGACTAAACCTTGGAACAGTGTGATGAAAGAATTTGAAAACGTTCAAATTCGTAAATTCGTACAAGGAGTAAATTTTACGATTTGTTCATGTTTATTATGAATTATACGAAATTGGAGAGTTCGAAATATTTAAATGTGATTTAAATATTAATCGGATGAATAAAGATTCATCATATTGCAATTTGTCAGGATAAGTGAAAAATTATTAATTTAATATTTAACATTAATTTAATATAATTAATTAATTATTATTTAAGTTAATTTTATATTAAATTAATGTAATTTAAAATTAATTATAAGAATTAATTTAAAAAAGAAAGTGGATTTTGAAAATTCATTTTTAATTCAAAATTGGATTTTGTAGGTTTTTTCCACTTTTGTATGGAAGTAGGAGTGTGTCTTCCTAAAGCCTCATCTCCTCCATCTTCCACCTTCTAATTCACTTCCTTAAATCGCCAATTAAGGTGTCAAAACCATAGCAAATGAGATTTGCATGAATTCTTCTTTATATAGAAGAAAGGAAGATTGAAAATGGGTTGACAATCAAGTAGAATTTGCTGAAATTCTCTCAATATCCCAAGCTCTTCAAAACATTGCGTTCTTCACGTTTTTGCTCCAAATTCTCCACAATTTGGATTCCACAATCCGTTCTAAGCTCAGAGAATAACGAGGAAGACTCTTGTGGTGGTCCACGAAGTATTCGTGATAAAAAAATTTGAAGGTATTTGATTTAATTTTGAAGTTTCATTGCCTATGTTTTTTCGGTTTTAGAACAAACATGTTTAATCTTCAAAACTGAATTGTGAGGTTGAGCTTTTAAATGCACATATTTAGTTTCTTAACTTTCAAAATGTTTAAGAATTACGAATCTACTAGTACAAAATTAAAATTTTATAGGAAATTATTATAAATAATAAAAATACCAAACTATTTACAAATATAGAAAAAATTTACTGTCTATCAGCGATAGACCACAATAGACTTCTATAATGATAAATGTCTATCACTCAAACAATAGAAGTTTATCGTTGATAGATAGTGAAATTTTTCTATATATGTAAATAGTTTGATTCATTTCGTTCTATTTGAAAACAACCCAATTTAAAATCTTTATTAGACATAAAAATTTGGCCCCTGCTATTAAAATTTTGTTTTCTTAACAAAATGGTCAGATGATTTGTATTTTTCGATGACTAAGCTACCAAAGAATAACACCATGCTAAAAAATATATGGTTTCAATCTTAAATAAGGTGGTAAAGTGATTTTTGTCTAGGATAACTTGAAAGTCATTTTTCATTCAAGATTTTGGTGTGTTGGTAGTTGACCTTTTACTTCATCTTCATCTTACTCAATGCATCTTCAGCCCAAAAGTACATGTCGGCTCACATTTTAGTTTAAGTTTTAACAAAATTTTAACTGTAGGGAATAAAATAAACACTTTTTAAAAATTCAGAGACTAGAATGAATATTTTAAAAATTTAGAGACTAAAATATATCGGAGAAACCAAATAGCATTTTAATCTATTTTATATATATATATATAAAATAGATTAGAGGGTTGGAAGCCCGTCAACTGTGACGGCGTATAAACGGCCTGTTTTCTCTAACCCTACTCTTCCTTTCCTTGATCCACGTAAAACGGTGCGTTTCGGTTTGGCCATGAAAATCGTTAAAACGGCGTTTATCTCCATTGTTGGTCCAAATCGAAACCACAAACAACACAGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGTATTCGTTTCTTTTTTCCCCCATTTCCACTTCTCTGTTTTGACATTTCTTCGATCCTAAACTGATTTCGTGATTCTCCCTTCTAATATTCTTTTGATTCAGGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGTTCGTTCTCTGTCTGTTCCTTTAATTTTGCTTTGATCGGTTTTTTGTTATTTTCTATGTTTTCGTTGATATGAAATTTTCGGCATTGCGACCTCTTGTGAGTTAACTGGCATAGGGATATGAAAGTTTTTTTTTTTTTTTTTGTGCGGCGGGATTGATATTTGCGGGGACTTTTCTTACTTGCTTTTTTCGTGTAAATTGTCTTGCGTTACTTGAGGAAACATTAAAATGTGGTTTGTATTTGATAGTAGTAATTTTGAAATGGTGGAAAACCACTTTTTGTTGTGTTTAAAATCGCTGCAAAACACATCTTTAATCACTCAAAATAGATTCAATGTTCAAATTGATTTTAAATGATCAAAAGCATTTTCTGAGTGACTTGAAAAAGAGAAAAGTGATTTTAACCATTTTCTCTGGGATGAACATTGTTGATTGATCATTGAATATCGTCTGCTTACTGCATCTGGAAATGCGTGGATTTCACTAATAATTGTTATGATATCCTAGGAATCAAATATGATCATTTCCCAGATTCAAATCGTGTTAACTTGGAAGTCATGTAGGATATCCCATATTTAAGGATTATGTTGCCCCCAATTTGAGTTTCAAATAAGTAAGCATTCTCTTATAGAAATCATTTTCCTATACAATTTAACCATTGAGTTGCTTGTCTTATATATGTGCATAGCTCTCTCCTGATCCATGGAGTTCATTAAAAAAAAACTCAAGTTTGAAGACCGACGTTAGACGGTGGTGAGAAACTTATGAGAATTAACTTATTAAACTCAGATTAGGACTTAAAGATCCAAGTATGTTCTAGGAAATTGGGTTAAACTGAAATCTGAGAGCAGAGATTCAAGCTGGGAAAGGTCTACATGTATAGAACGACATGATTTTAGTCGGCAAGCCATGATTCCTATGCTATTGATCTATTGCTTATGGATCCTTTTTTGGGGTGGATTTGCAGGAAGATCTTGA

mRNA sequence

ATGGAACCACCCACTTGCCCGAGAAATGGCCATTTCATCAAGCTCAGAAAAATTTTGGCACCTACATGGTTTGATCACTCTTGGCTGGCTCTGCTTTCTAACCTACAATCTCAGCTCGCATCTGAATTTGAAGCTTACTTCTCTTCAAGTCCCTCCAAGCAGCTGAAGGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGA

Coding sequence (CDS)

ATGGAACCACCCACTTGCCCGAGAAATGGCCATTTCATCAAGCTCAGAAAAATTTTGGCACCTACATGGTTTGATCACTCTTGGCTGGCTCTGCTTTCTAACCTACAATCTCAGCTCGCATCTGAATTTGAAGCTTACTTCTCTTCAAGTCCCTCCAAGCAGCTGAAGGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGA

Protein sequence

MEPPTCPRNGHFIKLRKILAPTWFDHSWLALLSNLQSQLASEFEAYFSSSPSKQLKVDTRHLKKKKREKVRDEFFIDGGIFGSASRPEGEGSDPLPASSQRHSQLGCSSPSLLPRCVGPPGEIRGKQTRGRS

Homology

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BLAST of CmUC11G207610.1 vs. NCBI nr
Match: KAG6571074.1 (hypothetical protein SDJN03_29989, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-23
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 64  KKKREKVRDEFFIDGGIFGSASRPEGEGSDPLPASSQRHSQLGCSSPSLLPRCVGPPGEI 123
           ++K E+ R+E F+DGGIFGSASRPEGEGSDPLPAS QRHSQLGCSSPSLL RCVGPPGEI
Sbjct: 23  REKEEEERNELFVDGGIFGSASRPEGEGSDPLPASPQRHSQLGCSSPSLLSRCVGPPGEI 82

Query: 124 RGKQTRGRS 133
           R KQ RGRS
Sbjct: 83  RCKQARGRS 91

The following BLAST results are available for this feature:

BLAST of CmUC11G207610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571074.1	3.1e-23	82.61	hypothetical protein SDJN03_29989, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmUC11G207610.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC11G207610.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC11G207610.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC11G207610	CmUC11G207610	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC11G207610.1-exon	CmUC11G207610.1-exon-CmU531Chr11:3963563..3963573	exon
CmUC11G207610.1-exon	CmUC11G207610.1-exon-CmU531Chr11:3964541..3964582	exon
CmUC11G207610.1-exon	CmUC11G207610.1-exon-CmU531Chr11:3964685..3964861	exon
CmUC11G207610.1-exon	CmUC11G207610.1-exon-CmU531Chr11:3968904..3969072	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC11G207610.1-cds	CmUC11G207610.1-cds-CmU531Chr11:3963563..3963573	CDS
CmUC11G207610.1-cds	CmUC11G207610.1-cds-CmU531Chr11:3964541..3964582	CDS
CmUC11G207610.1-cds	CmUC11G207610.1-cds-CmU531Chr11:3964685..3964861	CDS
CmUC11G207610.1-cds	CmUC11G207610.1-cds-CmU531Chr11:3968904..3969072	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC11G207610.1	CmUC11G207610.1-protein	polypeptide