CmUC10G197420.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC10G197420.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	VQ domain-containing protein
Location	CmU531Chr10: 29217562 .. 29217990 (+)
Sequence length	429
RNA-Seq Expression	CmUC10G197420.1
Synteny	CmUC10G197420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGGCGGCAACGACGACGGCAAAGAAGAAAACAACACGAAAAAGGAAATCATGCGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCTATCCGGCGTCATGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCACTGCTCAATTATCCTTTGGTTTAG

mRNA sequence

ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGGCGGCAACGACGACGGCAAAGAAGAAAACAACACGAAAAAGGAAATCATGCGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCTATCCGGCGTCATGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCACTGCTCAATTATCCTTTGGTTTAG

Coding sequence (CDS)

ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGGCGGCAACGACGACGGCAAAGAAGAAAACAACACGAAAAAGGAAATCATGCGATGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTCTATCCGGCGTCATGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGTGATGATGATTTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCACTGCTCAATTATCCTTTGGTTTAG

Protein sequence

MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

Homology

[Close]

BLAST of CmUC10G197420.1 vs. NCBI nr
Match: XP_008443611.1 (PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sigma factor binding protein 2 [Cucumis melo var. makuwa] >TYK25522.1 sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRTLLVSELT-TTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQVLLLDSSCDDDFFRSSYESFE 120
           TGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ LL+DSSCDDDF+RSS+ES E
Sbjct: 61  TGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLE 120

Query: 121 DILRKDLMENLGAISTSLLNYPLV 143
           DILR+D+MEN GAISTSL+N PLV
Sbjct: 121 DILRRDVMENFGAISTSLIN-PLV 142

[Close]

BLAST of CmUC10G197420.1 vs. NCBI nr
Match: XP_011652185.1 (uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-52
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQ 60
           MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQ
Sbjct: 1   MDRSLLVSEL---TTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQ 60

Query: 61  ELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDDFFRSSY 120
           ELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ LL+DSSCDDDF RSSY
Sbjct: 61  ELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSY 120

Query: 121 ESFEDILRKDLMENLGAISTSLLNYPLV 143
           ES EDILR+D+MEN GAISTSL N PLV
Sbjct: 121 ESLEDILRRDVMENFGAISTSLFN-PLV 144

[Close]

BLAST of CmUC10G197420.1 vs. NCBI nr
Match: KAE8651179.1 (hypothetical protein Csa_002123, partial [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 85/99 (85.86%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 44  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVL 103
           MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ L
Sbjct: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60

Query: 104 LLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLN 139
           L+DSSCDDDF RSSYES EDILR+D+MEN GAISTSL N
Sbjct: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFN 99

[Close]

BLAST of CmUC10G197420.1 vs. NCBI nr
Match: XP_022147780.1 (sigma factor binding protein 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-27
Identity = 84/148 (56.76%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRNLIVSEM-----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ----VLLLDSSCDDDFFRSSYE 120
           TGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+    V       +DDF  S YE
Sbjct: 61  TGRDAEFPDPAKFHQASIDVGEMNLEKN--REGDDDEEASLDVATTMEDSNDDFLESPYE 120

Query: 121 SFEDIL-RKDLMENLGAISTSLLNYPLV 143
           SFE++L R+ LMEN    S S+ +  LV
Sbjct: 121 SFEEMLMREMLMENFAVPSRSVESSGLV 141

[Close]

BLAST of CmUC10G197420.1 vs. NCBI nr
Match: XP_023539403.1 (uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-17
Identity = 66/139 (47.48%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           M+ SLV  +V       +K+  RKRK CD K QPLKVVYISNPMRV  SA+EFR LVQ+L
Sbjct: 1   MESSLVGRDV----EEGRKERRRKRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQQL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLL--------DSSCDDDFFRS 120
           TG+DA    PS    AS E      +K+  + ++D+Q LLL        DSS  DDF   
Sbjct: 61  TGQDAPKFPPS----ASVETPETNVRKIQDDDDDDDQQLLLHWAAAIMEDSS--DDFLGG 120

Query: 121 SYESFEDILRKDLMENLGA 132
           SYES E I  +D+++ L A
Sbjct: 121 SYESLEGIFMRDMVDRLAA 129

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 8  SEVTAATTTA---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQ 67
          S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQ
Sbjct: 4  SSSTFLTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQ 63

Query: 68 ELTGRDAEFPDPSKFYPASCEIMN 83
          ELTG+DA    P   Y  S +  N
Sbjct: 64 ELTGQDAVDLQPEPIYSPSSDDHN 87

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MDRS---LVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALV 60
           MD+S   L++++  ++++  +    +KRKS    K P+KV YISNPMRV T  S+FR LV
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELV 60

Query: 61  QELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDDFFRS 113
           QELTG+DA    PS     + ++    E ++  E  + E      S  D++ F +
Sbjct: 61  QELTGQDAADLPPSPTTFTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNA 114

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy TrEMBL
Match: A0A5D3DPQ4 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006730 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.1e-56
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRTLLVSELT-TTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQVLLLDSSCDDDFFRSSYESFE 120
           TGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ LL+DSSCDDDF+RSS+ES E
Sbjct: 61  TGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLE 120

Query: 121 DILRKDLMENLGAISTSLLNYPLV 143
           DILR+D+MEN GAISTSL+N PLV
Sbjct: 121 DILRRDVMENFGAISTSLIN-PLV 142

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy TrEMBL
Match: A0A1S3B8H6 (uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.1e-56
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRTLLVSELT-TTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQVLLLDSSCDDDFFRSSYESFE 120
           TGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ LL+DSSCDDDF+RSS+ES E
Sbjct: 61  TGRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLE 120

Query: 121 DILRKDLMENLGAISTSLLNYPLV 143
           DILR+D+MEN GAISTSL+N PLV
Sbjct: 121 DILRRDVMENFGAISTSLIN-PLV 142

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy TrEMBL
Match: A0A0A0LFH5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQ 60
           MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQ
Sbjct: 1   MDRSLLVSEL---TTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQ 60

Query: 61  ELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDDFFRSSY 120
           ELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ LL+DSSCDDDF RSSY
Sbjct: 61  ELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSY 120

Query: 121 ESFEDILRKDLMENLGAISTSLLNYPLV 143
           ES EDILR+D+MEN GAISTSL N PLV
Sbjct: 121 ESLEDILRRDVMENFGAISTSLFN-PLV 144

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy TrEMBL
Match: A0A6J1D137 (sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016633 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 84/148 (56.76%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 1   MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQEL 60
           MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQEL
Sbjct: 1   MDRNLIVSEM-----EPMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQEL 60

Query: 61  TGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ----VLLLDSSCDDDFFRSSYE 120
           TGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+    V       +DDF  S YE
Sbjct: 61  TGRDAEFPDPAKFHQASIDVGEMNLEKN--REGDDDEEASLDVATTMEDSNDDFLESPYE 120

Query: 121 SFEDIL-RKDLMENLGAISTSLLNYPLV 143
           SFE++L R+ LMEN    S S+ +  LV
Sbjct: 121 SFEEMLMREMLMENFAVPSRSVESSGLV 141

[Close]

BLAST of CmUC10G197420.1 vs. ExPASy TrEMBL
Match: A0A803QPK7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 19  KKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASC 78
           K   + +KS +++K P+KVVYISNPM+V TSASEFRALVQELTG+DAEFPDP+KF  A  
Sbjct: 23  KFPNKTKKSINKQKPPVKVVYISNPMKVKTSASEFRALVQELTGQDAEFPDPTKFEAADK 82

Query: 79  EIMNDLEKKVVAEGEEDEQV-LLLDSS----------CDDDFFRSSYESF-EDILRKDLM 138
           E     E      G ED  V L+++SS            ++   S YE F +D+    +M
Sbjct: 83  EEDYGTEDPTAKMGSEDHDVDLVVESSSTTTTSTTTPTSNNNTASYYEMFDDDVFMPQMM 142

Query: 139 ENLGAISTSLLNY 140
           ++L  I  S + Y
Sbjct: 143 DSLSGIFPSTVWY 155

[Close]

BLAST of CmUC10G197420.1 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-09
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 8  SEVTAATTTA---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQ 67
          S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQ
Sbjct: 4  SSSTFLTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQ 63

Query: 68 ELTGRDAEFPDPSKFYPASCEIMN 83
          ELTG+DA    P   Y  S +  N
Sbjct: 64 ELTGQDAVDLQPEPIYSPSSDDHN 87

[Close]

BLAST of CmUC10G197420.1 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MDRS---LVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALV 60
           MD+S   L++++  ++++  +    +KRKS    K P+KV YISNPMRV T  S+FR LV
Sbjct: 1   MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELV 60

Query: 61  QELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSCDDDFFRS 113
           QELTG+DA    PS     + ++    E ++  E  + E      S  D++ F +
Sbjct: 61  QELTGQDAADLPPSPTTFTAVDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNA 114

The following BLAST results are available for this feature:

BLAST of CmUC10G197420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443611.1	1.5e-55	84.72	PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sig...	[more]
XP_011652185.1	2.6e-52	83.11	uncharacterized protein LOC105434994 [Cucumis sativus]	[more]
KAE8651179.1	1.3e-35	85.86	hypothetical protein Csa_002123, partial [Cucumis sativus]	[more]
XP_022147780.1	2.9e-27	56.76	sigma factor binding protein 2, chloroplastic-like [Momordica charantia]	[more]
XP_023539403.1	6.0e-17	47.48	uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmUC10G197420.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	5.3e-08	48.81	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	2.2e-06	35.65	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmUC10G197420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ4	7.1e-56	84.72	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B8H6	7.1e-56	84.72	uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=...	[more]
A0A0A0LFH5	1.3e-52	83.11	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=...	[more]
A0A6J1D137	1.4e-27	56.76	sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=367...	[more]
A0A803QPK7	4.6e-15	44.36	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CmUC10G197420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	3.8e-09	48.81	sigma factor binding protein 1	[more]
AT2G41180.1	1.6e-07	35.65	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 6.9E-13 score: 47.8
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 18..137
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 18..137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC10G197420	CmUC10G197420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G197420.1-exon	CmUC10G197420.1-exon-CmU531Chr10:29217562..29217990	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G197420.1-cds	CmUC10G197420.1-cds-CmU531Chr10:29217562..29217990	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC10G197420.1	CmUC10G197420.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity