CmUC10G197320.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC10G197320.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	rRNA-processing protein FCF1-like protein
Location	CmU531Chr10: 29045985 .. 29050117 (+)
Sequence length	1047
RNA-Seq Expression	CmUC10G197320.1
Synteny	CmUC10G197320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAGAAAGAGGCAAAACCCTAACCTCCATCATCGTCCTCTCACTCTCACGTGCTACACAACACCTTCTTTTTCTTCACATTCACTCCGTCTCCTCCTCCTTTTCAGCAGCTTAGTGTCGCCGCCGCCTCTCTCCCGTTCAGTATTGCCGCCGCCGTCGTCTTTCCTCCGCTCGTGCCGCCCCAGCCTCTCTCCTGACGGGTTTGCGCTGATTTTCTACTCTCCTGTTGTTACTGGTATTGTCCCAATCTCCATCTACGTTATTCGTCTCACTTGAACATTAGGGCTTGTCTAATGAAAGAATGGAGGAGTTATTTATTTGTTTTTTTTTTTTTTTTTTTAAATTTTAAAATGACAATATCGGAACAGAACAGCAACGAGTAACAAAAGAAAAAAAAAGGCTTGCGGCAAATTGGGACTTCTGGAACTGCCTATTGATTTGTTGCATATGTCTGTCAACAAAGGCTTTGATCATCTATATATCTCTTTGGTTTCTGCTGAAAATTGCCTTGTTTCTCCGATCATGTATGTTCTAGCATCTCCTTTCTTTATTTATCAGAGGATTAGGCTGAATAATCTATCCTATTATAAAATTCTCTTTTAATCCTTAGTTTGTAGTATTAGTTTTGATTTACCTAACAACTTTGACCAATTTATTCTTGTACATTTGTAGATTATAGTAGATTATAGTTGGGGAGAAGACAATGAGTTGAAAATATTCATAGTAAAATAAACATACCTTAAATTTGGAAGGCTTAAATGGGACCTAAATATTCTTCCTTTTAGTTTTAGCCACTTTTAGACTTGTAATTTTCATGGTAATATTATGAAGGAACAAAAATGTTTTATGGAGAAATTAAGTACCTTTTTTTTTAAAAAAAAAAATTATTATTATTATTTTTAAATTTACGAGTAACCCATCCTTCTTATTGTGAAACATGGGACGCTTTTGGTACTCTCAGGTGCTCCAAACAATTTAGTCTTCTTTATATTACTATATCTCTAGAGTCATTCAGTCAATAATTCTATATGTGAACTCAATATGTGTTAACATGTATGGTATGCATGATTTTTGTGGAAATTGGTACAAATATATTACTTCTTGATTGTCCTTTTGAGATTTTGGGATTCATATACATGATTGTTAGTTGTTTCCTCATTACCAAAACATTGCAGATACTGAGCAAGTCCTCCTCTAAGCTTCAAAGCATTGAAATTGCATCTGAGAGAATTTAGTCAGCCATTTGGTGACACAACTTCAATTGTTCTTTTTCATTCAATCAACGAGATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCATGAAGAAGATGGTCACCTCTAAAGCAATTAAGAAGTATGCCTTCCGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAATCGATAACTTTATCCTACTCTTTTTTAAAATTTTAAAAAAATTCTTGTTTGCTTATGTTTGTCTTGTTTTGTTACTTATCTTAGCTATAAGGAAGAGGTCTTGAATCCAAAAAGAAAAGATCTTACGAAAGAAAATCTCCCAAGAAATGTGTAAGGAACTTCTTGAGCTGACTATTTTCTACTATATCTTTCCATAACATATTAGCATTTTCTAAGTTTATTGTTGGATATAAAACTTTGTTTTCTACTGTTGGTGCCGTTAATTCAGTCCAAATGTTCCTTCGGCACTTTTCTTCAAGTACAACACCGCATTGGGACCACCTTATCGGGTTTTGGTGGATACAAACTTCATCAATTTCTCCATTCAAAACAAAGTGAGTGCTTCACATTTTTAATGAGACTATATTATATTATAACTGTGCGATTCCTATGGAAATGTAAAACCCATTTTATTATGAATATGTTTGTGAATGATTTGAAAAATATATGTAATTTTGTTTTGAAAACCAGTGGAATTTTTCTCGGCAAATTTCATAATGATGAGAAAGCACTACATCAAGCAACTTGCAAGTGGAAGTAAGGATAAAATTTATTTCTACTTGATGACTGAAGGGTTTTTTTTTTTTTTTTTCCTATTCCAGTTGGACTTGGAAAAGGGAATGATGGACTGTCTATATGCAAAATGTAAGTCACACATTTACAGAAACTTTGTTAGAATTCAAAATATGAGAAGTGACATTCGTTGTGGACATGGATACTTATTTGTGATCATGTTATAGGCACTCCTTGTATAACAGACTGTGTCATGGCTGAGCTTGAGCGGTTAGGTCAGAAGTATCGTGTTGCTCTTAGGTAAATACGTGTTCCATTTGTGAGATGAATTCTCTATGCTTTCATTTTCTGGTACTATATGTTAGATAATATAATATTAAATTTGATTTCACTTATCAACTTAAGCATTTGGGTCAATCGGTGATTTAAGATGGTACTAGAGTAGGTGGTCCAAGAGGTCTTGTGTTCAAAAACCCCTCAATATTATTTCCTCCCTAATTAATATTGATTTCTACTTGTTGGGTCTTTTTCATATTTCAAGCCCACAAGTGAAGAGGAGTATTGGATGACATACTATTAAATTTTCCTTCACCCATCCAGCTTAAGCTTTTGGGTCAATCGATCATTTAAGATACATATGTATGTTCACATTCATATGCTTTTGAATTTGGGAGTTGGTTGATATAGTGTGCACAAGTTTGTGTTTTGCTTTACTTGTCCATCTTCAATTTTGTTGTTGGGGTAATTTCAACAACTCATAATGATTTGGAATGATCTTATCCAAAAAGTAATAATTTGGAATGCTAGCACTAATCTAATAGTAGATTAAAGGTTATAAGAAATCTAGGAAAAGTTTAGTATTATGATTGTAAAGAAACAATATAGGCTTTTAATATACTGTGGGGATATGATTTTTTGGGAACCATACCATATTCTACGTTTCTTTTTGGTGTTCTCTTTCTTGTTATTTTTGTAAATATATGTATTTTTTAAAGACTACTGCTTGTTTCCTTTTGCATCTCTCTTGTTGGTATTGTTTACGATTTTTGGGCTTGAGCAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGATGATTGCCTCGTTGAAAGGGTGACTCAGGTAAGAACTGAAGGCTTTTTGCTTATTATCCTGTTTGGTGACTATAGGTGTTCCAATTTCATAGTTCATATCTTTTTAATTTCTAATACGATATCTAGATATCTTCTTTTTAGATGGTTGACATTCTCAATACTTAACATATATATATATATATATATATATATATTGTATATAAGGGAAGTTGGGGGTAACTTGTAACCTAGGAAATATTTATTACGTCACTTGGTTCAGTTAATTTTTTTTGGATATATGCTGGATCATGGCTCACTTCAGATACTGCTTTATGTTTGTCCACGTGCATTAGAATTAAAAAAAACTACTTTTCCATAGTAATTTTTGACACTATGGACGTGTGCTATACTTACTTGGGCCAGTTGTCATATTTGGACGCGTTGTAGACACACTGGGGCATGTGAATGCAGATGAAAAAGGGCAAAGCTAACATGTTTATTCAGCATTAAATATAGAGTACATAGTAAACCAGTGTAGATTATAGTTCTCTTCTTTCAACTGATGTTCGTAATGAAACTAACACATATTTAGTTACAGACTTAACAGTATGGTTTATTATATTTTTAGCTATTAAATGTAACTAGGATAACCAACATTGCATTAAGTTATGAGAGAAAAGGGGAACCAAGCTCTCACGTTGTATCAGATAAAGATTATAAGAAAAAAGGATGAATTAGCGTCATGAAGTTAAAGTAGAGATAGTGAGCTACATGCTGCTTTTTCACTGTTTTGGTATTTTTTTTAATAGAAGCTTTCTTTTTGTGCAGCATAAGTGTTATATCGTTGCTACATGTGATAGAGATTTGAAGCGTAGGATTCGCAAGGTATAATCAGACCATAATAGTTGGCAACACAGGATGTTGGATTTAGATGTAGTAACTCGCCTATTTTCTTGCAGATTCCTGGTGTACCCATCATGTATATAACTCGGCACCAGTATTCGATCGAGCGGTTGCCAGAAGCAACAATGGGAGGAGGTAGGCTAAACATGTCTTAA

mRNA sequence

AAAATAGAAAGAGGCAAAACCCTAACCTCCATCATCGTCCTCTCACTCTCACGTGCTACACAACACCTTCTTTTTCTTCACATTCACTCCGTCTCCTCCTCCTTTTCAGCAGCTTAGTGTCGCCGCCGCCTCTCTCCCGTTCAGTATTGCCGCCGCCGTCGTCTTTCCTCCGCTCGTGCCGCCCCAGCCTCTCTCCTGACGGGTTTGCGCTGATTTTCTACTCTCCTGTTGTTACTGAACAGCAACGAGTAACAAAAGAAAAAAAAAGGCTTGCGGCAAATTGGGACTTCTGGAACTGCCTATTGATTTGTTGCATATGTCTGTCAACAAAGATACTGAGCAAGTCCTCCTCTAAGCTTCAAAGCATTGAAATTGCATCTGAGAGAATTTAGTCAGCCATTTGGTGACACAACTTCAATTGTTCTTTTTCATTCAATCAACGAGATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCATGAAGAAGATGGTCACCTCTAAAGCAATTAAGAACTATAAGGAAGAGGTCTTGAATCCAAAAAGAAAAGATCTTACGAAAGAAAATCTCCCAAGAAATGTTCCAAATGTTCCTTCGGCACTTTTCTTCAAGTACAACACCGCATTGGGACCACCTTATCGGGTTTTGGTGGATACAAACTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAAAAGGGAATGATGGACTGTCTATATGCAAAATGCACTCCTTGTATAACAGACTGTGTCATGGCTGAGCTTGAGCGGTTAGGTCAGAAGTATCGTGTTGCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGATGATTGCCTCGTTGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCTACATGTGATAGAGATTTGAAGCGTAGGATTCGCAAGATTCCTGGTGTACCCATCATGTATATAACTCGGCACCAGTATTCGATCGAGCGGTTGCCAGAAGCAACAATGGGAGGAGGTAGGCTAAACATGTCTTAA

Coding sequence (CDS)

ATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCATGAAGAAGATGGTCACCTCTAAAGCAATTAAGAACTATAAGGAAGAGGTCTTGAATCCAAAAAGAAAAGATCTTACGAAAGAAAATCTCCCAAGAAATGTTCCAAATGTTCCTTCGGCACTTTTCTTCAAGTACAACACCGCATTGGGACCACCTTATCGGGTTTTGGTGGATACAAACTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAAAAGGGAATGATGGACTGTCTATATGCAAAATGCACTCCTTGTATAACAGACTGTGTCATGGCTGAGCTTGAGCGGTTAGGTCAGAAGTATCGTGTTGCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGATGATTGCCTCGTTGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCTACATGTGATAGAGATTTGAAGCGTAGGATTCGCAAGATTCCTGGTGTACCCATCATGTATATAACTCGGCACCAGTATTCGATCGAGCGGTTGCCAGAAGCAACAATGGGAGGAGGTAGGCTAAACATGTCTTAA

Protein sequence

MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATMGGGRLNMS

Homology

[Close]

BLAST of CmUC10G197320.1 vs. NCBI nr
Match: TYK25530.1 (rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108
Identity = 194/197 (98.48%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKKMVTSKAIKNYK+EVLNPKRKDLTKENLPRNVPNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGGRL 198
           QYSIERLPEAT+GGGRL
Sbjct: 181 QYSIERLPEATIGGGRL 197

[Close]

BLAST of CmUC10G197320.1 vs. NCBI nr
Match: XP_004136642.1 (rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical protein Csa_002627 [Cucumis sativus])

HSP 1 Score: 400.2 bits (1027), Expect = 1.0e-107
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGG 195
           QYSIERLPEAT+GG
Sbjct: 181 QYSIERLPEATIGG 194

[Close]

BLAST of CmUC10G197320.1 vs. NCBI nr
Match: XP_038903189.1 (rRNA-processing protein FCF1 homolog [Benincasa hispida])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKKMVTSKAIKNYKE+VLNPKRKDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEQVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGG 195
           QYSIERLPEAT+GG
Sbjct: 181 QYSIERLPEATIGG 194

[Close]

BLAST of CmUC10G197320.1 vs. NCBI nr
Match: XP_022935178.1 (rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >XP_022983876.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >KAG6580887.1 rRNA-processing protein FCF1-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017645.1 rRNA-processing protein FCF1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 4.0e-107
Identity = 190/194 (97.94%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPKRKDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGG 195
           QYSIERLPEATMGG
Sbjct: 181 QYSIERLPEATMGG 194

[Close]

BLAST of CmUC10G197320.1 vs. NCBI nr
Match: KAA0053874.1 (rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 6.8e-107
Identity = 193/198 (97.47%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKK+VTSKAIKNYK+EVLNPKRKDLTKENLPRNVPNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKLVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVAL- 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVAL 
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALS 120

Query: 121 RIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITR 180
           RIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITR
Sbjct: 121 RIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITR 180

Query: 181 HQYSIERLPEATMGGGRL 198
           HQYSIERLPEAT+GGGRL
Sbjct: 181 HQYSIERLPEATIGGGRL 198

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy Swiss-Prot
Match: Q32PD0 (rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-75
Identity = 135/191 (70.68%), Postives = 160/191 (83.77%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A MK+M++ +  +  +++ L PK+K+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy Swiss-Prot
Match: Q9Y324 (rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-75
Identity = 135/191 (70.68%), Postives = 160/191 (83.77%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A MK+M++ +  +  +++ L PK+K+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy Swiss-Prot
Match: Q5RFQ0 (rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-75
Identity = 135/191 (70.68%), Postives = 160/191 (83.77%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A MK+M++ +  +  +++ L PK+K+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy Swiss-Prot
Match: Q9CTH6 (rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 279.3 bits (713), Expect = 3.5e-74
Identity = 132/191 (69.11%), Postives = 160/191 (83.77%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A MK+M++ +  +  +++ L PK+K+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQK+RVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMY++
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180

Query: 181 RHQYSIERLPE 190
            H+Y+IER+P+
Sbjct: 181 NHRYNIERMPD 191

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy Swiss-Prot
Match: Q05498 (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.6e-64
Identity = 117/189 (61.90%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KF ++K+ + +K  +  K+   N K K+     L RN+P V SALFF+YN A
Sbjct: 1   MGKAKKTRKFGLVKRTLNTKKDQRLKKNQENIKTKE--DPELTRNIPQVSSALFFQYNQA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           + PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELE+LG KYR+AL+
Sbjct: 61  IKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALK 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           +A+DPR +RL C+HKGTYADDCLV RV QHKCYIVAT D  LK+RIRKIPG+P+M +  H
Sbjct: 121 LARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSVGGH 180

Query: 181 QYSIERLPE 190
            Y IE+LP+
Sbjct: 181 AYVIEKLPD 187

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy TrEMBL
Match: A0A5D3DQI4 (rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006820 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.0e-109
Identity = 194/197 (98.48%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKKMVTSKAIKNYK+EVLNPKRKDLTKENLPRNVPNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGGRL 198
           QYSIERLPEAT+GGGRL
Sbjct: 181 QYSIERLPEATIGGGRL 197

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy TrEMBL
Match: A0A0A0LEW8 (PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.0e-108
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGG 195
           QYSIERLPEAT+GG
Sbjct: 181 QYSIERLPEATIGG 194

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy TrEMBL
Match: A0A6J1J3K9 (rRNA-processing protein FCF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482358 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 190/194 (97.94%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPKRKDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGG 195
           QYSIERLPEATMGG
Sbjct: 181 QYSIERLPEATMGG 194

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy TrEMBL
Match: A0A6J1F9T9 (rRNA-processing protein FCF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111442132 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 190/194 (97.94%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPKRKDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGG 195
           QYSIERLPEATMGG
Sbjct: 181 QYSIERLPEATMGG 194

[Close]

BLAST of CmUC10G197320.1 vs. ExPASy TrEMBL
Match: A0A5A7UFA7 (rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002670 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.3e-107
Identity = 193/198 (97.47%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVMKK+VTSKAIKNYK+EVLNPKRKDLTKENLPRNVPNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKLVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVAL- 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVAL 
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALS 120

Query: 121 RIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITR 180
           RIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITR
Sbjct: 121 RIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITR 180

Query: 181 HQYSIERLPEATMGGGRL 198
           HQYSIERLPEAT+GGGRL
Sbjct: 181 HQYSIERLPEATIGGGRL 198

[Close]

BLAST of CmUC10G197320.1 vs. TAIR 10
Match: AT2G46230.1 (PIN domain-like family protein )

HSP 1 Score: 337.8 bits (865), Expect = 5.9e-93
Identity = 159/194 (81.96%), Postives = 178/194 (91.75%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KFAV+KKM++ KA+K+YKEEVLNP +KDLT+  LPRNVP+VP+ LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T  
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNR 180

Query: 181 QYSIERLPEATMGG 195
           +YSIE+LPEAT+GG
Sbjct: 181 KYSIEKLPEATLGG 192

[Close]

BLAST of CmUC10G197320.1 vs. TAIR 10
Match: AT2G46230.2 (PIN domain-like family protein )

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-79
Identity = 139/169 (82.25%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KFAV+KKM++ KA+K+YKEEVLNP +KDLT+  LPRNVP+VP+ LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI 170
           IAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRK+
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKV 167

[Close]

BLAST of CmUC10G197320.1 vs. TAIR 10
Match: AT1G26530.1 (PIN domain-like family protein )

HSP 1 Score: 258.5 bits (659), Expect = 4.6e-69
Identity = 132/194 (68.04%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGR KK  KFAVMK M++ KA+K+YKEEVLNP +KDLT+  LPRNVP+VPS LFF +N++
Sbjct: 1   MGRTKKPQKFAVMKMMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPSGLFFSHNSS 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM                M  + ++   Y     
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGM----------------MVFVRKMHSLYYGL-- 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPC  KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T+ 
Sbjct: 121 IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQR 174

Query: 181 QYSIERLPEATMGG 195
           +YSIE+LPEAT+GG
Sbjct: 181 KYSIEKLPEATIGG 174

[Close]

BLAST of CmUC10G197320.1 vs. TAIR 10
Match: AT2G34570.1 (PIN domain-like family protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-08
Identity = 39/149 (26.17%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 44  RNVPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKL-DLEKGMMDCLYAKCTPCITD 103
           R   N  +  FF        PY+VL D  F++  + N++   +  + + L        T 
Sbjct: 5   RQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTR 64

Query: 104 CVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIVAT 163
           CV+AELE+LG+ +  +L  A+        C H +   AD+CL E +    T+H  + + T
Sbjct: 65  CVIAELEKLGKDFAESLEAAQ--TLNTATCEHEEAKTADECLSEVIGVQNTEH--FFLGT 124

Query: 164 CDRDLKRRIRKIPGVPIMYITRHQYSIER 187
            D + +R++++   VP+++  R+   I++
Sbjct: 125 QDAEFRRKLQQESIVPLVFGLRNILLIDQ 149

The following BLAST results are available for this feature:

BLAST of CmUC10G197320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25530.1	1.2e-108	98.48	rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa]	[more]
XP_004136642.1	1.0e-107	98.97	rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical ...	[more]
XP_038903189.1	1.8e-107	98.97	rRNA-processing protein FCF1 homolog [Benincasa hispida]	[more]
XP_022935178.1	4.0e-107	97.94	rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-p...	[more]
KAA0053874.1	6.8e-107	97.47	rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa]	[more]

BLAST of CmUC10G197320.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32PD0	3.2e-75	70.68	rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1	[more]
Q9Y324	3.2e-75	70.68	rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1	[more]
Q5RFQ0	3.2e-75	70.68	rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1	[more]
Q9CTH6	3.5e-74	69.11	rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2	[more]
Q05498	5.6e-64	61.90	rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of CmUC10G197320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQI4	6.0e-109	98.48	rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LEW8	5.0e-108	98.97	PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 S...	[more]
A0A6J1J3K9	1.9e-107	97.94	rRNA-processing protein FCF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482358...	[more]
A0A6J1F9T9	1.9e-107	97.94	rRNA-processing protein FCF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A5A7UFA7	3.3e-107	97.47	rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of CmUC10G197320.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46230.1	5.9e-93	81.96	PIN domain-like family protein	[more]
AT2G46230.2	1.3e-79	82.25	PIN domain-like family protein	[more]
AT1G26530.1	4.6e-69	68.04	PIN domain-like family protein	[more]
AT2G34570.1	7.7e-08	26.17	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002716	PIN domain	SMART	SM00670	PIN_9	coord: 65..164 e-value: 8.6E-15 score: 65.1
None	No IPR available	GENE3D	3.40.50.1010		coord: 51..193 e-value: 9.6E-51 score: 173.6
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..195
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 1..195
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 90..186 e-value: 6.1E-40 score: 135.5
IPR037503	rRNA-processing protein Fcf1, PIN domain	CDD	cd09864	PIN_Fcf1-like	coord: 55..185 e-value: 2.9651E-105 score: 296.369
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 63..187

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC10G197320	CmUC10G197320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29045985..29046221	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29046355..29046449	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29047162..29047344	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29047493..29047558	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29047677..29047782	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29048050..29048092	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29048188..29048260	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29049021..29049108	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29049888..29049944	exon
CmUC10G197320.1-exon	CmUC10G197320.1-exon-CmU531Chr10:29050019..29050117	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G197320.1-five_prime_utr	CmUC10G197320.1-five_prime_utr-CmU531Chr10:29045985..29046221	five_prime_UTR
CmUC10G197320.1-five_prime_utr	CmUC10G197320.1-five_prime_utr-CmU531Chr10:29046355..29046449	five_prime_UTR
CmUC10G197320.1-five_prime_utr	CmUC10G197320.1-five_prime_utr-CmU531Chr10:29047162..29047273	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29047274..29047344	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29047493..29047558	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29047677..29047782	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29048050..29048092	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29048188..29048260	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29049021..29049108	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29049888..29049944	CDS
CmUC10G197320.1-cds	CmUC10G197320.1-cds-CmU531Chr10:29050019..29050117	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC10G197320.1	CmUC10G197320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0005730	nucleolus