CmUC10G196280.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC10G196280.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Gibberellin-regulated protein 6-like
Location	CmU531Chr10: 27885837 .. 27887110 (+)
Sequence length	648
RNA-Seq Expression	CmUC10G196280.1
Synteny	CmUC10G196280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGCCCCCTTCTATTTATACCCAACACAGCCGAGCTCCCCAAACTCAAATACCCCATTTCCTATTTCAACCTTCTTATTCTTCCTTTGTACCCTTCCAATGGCAATGGCTAAGTTCGCTGCTCTCTTGCTTCTCGCCCTCATTGCCTTTTCCATGCTTCAGACCACTGTGAGACTCTTTCCTCCGCTACCTTACTTCTCTTCTTTCCGGTCCCTCTGTCTTTTTTCTTCACAGAACTGACTCTGTTTTTCTCTTTGTTGTTCGATCCGTTTCTACAGGTCATGGCCGGCAGTAGTGGTCGAAACAGGGTAAAACTCCTTTTCTACTACCAACTCCTCTTTCACCCGAAATCCGTGTTTCCAATGTTGGATCATTTTACCATTGCGGCATTTTGTCGAACACTTAAGATTTACTCTGTTCTTGGGTTTGAAAATGGTCTTTCGTACTCTCAAATTCACTCATTTGCTGTAGATCAAGCTTTATTGCGGCATTTTGTCGAACACTTTGTAGTTGTACTCGTATTTTGACTAAGCATTGATCTTGACTTTGAGACACACAAAACTTTCCTTTTACTCCACTGCTAACGTAAATCAGGCATTAGAACTCTAAAATCAACAATTTGTTATAGCGGCACTTTGTCAAACACCTTGTAATTGTACTCACTACTCACAATTTGGCTTTTTTTCAGAACCCATATGGACCAGGGAGCGTCAAATCCTTCCGTGAGTACTCTCCTAATTTACAATGCTGCTTTGAGTTGTACTTACTTGGATTTCTCTGAAAGGGTTTTTTTTTTTTTTTTTTTTTAAAATAAAAATTCACAGAATGCCCAAATCGATGTGCCACTCGATGCGGAAAAACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAAGCCGTTTGCCCTTGCTACAACAATTGGAAGACAAAGGAAGGAGGACCCAAATGCCCTTAAAAAAACCCCAATTCATTTTGCTGCTAACTCCATCTCTTTTGTTTCCCCTTTTAAAGAAATGGGGCTCTGTTATGTTTTTGTTATGAACTTTTATTGGAGATGGGGAAGAAAAAGAAAGAAGAGAGAAGAAATTTGTCACTCATTAGATGGGAAGAAATATTGGTTTACTTAATATTATAAGTTATAATATATGAAGCAATGAATGAAACATCTTGTTTCTATTAAGATATGGTGTGAATTATTTGGTGTTTTATTGGCTTTGAGAAC

mRNA sequence

CTCCGCCCCCTTCTATTTATACCCAACACAGCCGAGCTCCCCAAACTCAAATACCCCATTTCCTATTTCAACCTTCTTATTCTTCCTTTGTACCCTTCCAATGGCAATGGCTAAGTTCGCTGCTCTCTTGCTTCTCGCCCTCATTGCCTTTTCCATGCTTCAGACCACTGTCATGGCCGGCAGTAGTGGTCGAAACAGGAATGCCCAAATCGATGTGCCACTCGATGCGGAAAAACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAAGCCGTTTGCCCTTGCTACAACAATTGGAAGACAAAGGAAGGAGGACCCAAATGCCCTTAAAAAAACCCCAATTCATTTTGCTGCTAACTCCATCTCTTTTGTTTCCCCTTTTAAAGAAATGGGGCTCTGTTATGTTTTTGTTATGAACTTTTATTGGAGATGGGGAAGAAAAAGAAAGAAGAGAGAAGAAATTTGTCACTCATTAGATGGGAAGAAATATTGGTTTACTTAATATTATAAGTTATAATATATGAAGCAATGAATGAAACATCTTGTTTCTATTAAGATATGGTGTGAATTATTTGGTGTTTTATTGGCTTTGAGAAC

Coding sequence (CDS)

ATGGCAATGGCTAAGTTCGCTGCTCTCTTGCTTCTCGCCCTCATTGCCTTTTCCATGCTTCAGACCACTGTCATGGCCGGCAGTAGTGGTCGAAACAGGAATGCCCAAATCGATGTGCCACTCGATGCGGAAAAACACAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAAGCCGTTTGCCCTTGCTACAACAATTGGAAGACAAAGGAAGGAGGACCCAAATGCCCTTAAAAAAACCCCAATTCATTTTGCTGCTAACTCCATCTCTTTTGTTTCCCCTTTTAAAGAAATGGGGCTCTGTTATGTTTTTGTTATGAACTTTTATTGGAGATGGGGAAGAAAAAGAAAGAAGAGAGAAGAAATTTGTCACTCATTAGATGGGAAGAAATATTGGTTTACTTAA

Protein sequence

MAMAKFAALLLLALIAFSMLQTTVMAGSSGRNRNAQIDVPLDAEKHSTTSHACSSAKSAAGSACVCRLATMETKPFALATTIGRQRKEDPNALKKTPIHFAANSISFVSPFKEMGLCYVFVMNFYWRWGRKRKKREEICHSLDGKKYWFT

Homology

[Close]

BLAST of CmUC10G196280.1 vs. NCBI nr
Match: XP_022933447.1 (uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 7.5e-26
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNAQIDVPLDAEKHSTTSHACSSAKS 60
          MAMAKFAA+L+L+LIA SM +TTVMAG+   GRNRNAQ+  PLDA  HSTT+HACS AK+
Sbjct: 3  MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKN 62

Query: 61 AAGSACVCRLATMETKPFALATTIGRQRKEDPNALKK 96
          AA SAC CR  TMETK FALATT GRQRKE PNAL+K
Sbjct: 63 AAESACACRRVTMETKAFALATTTGRQRKEGPNALRK 99

[Close]

BLAST of CmUC10G196280.1 vs. NCBI nr
Match: KAG7017706.1 (hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-24
Identity = 82/139 (58.99%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 1   MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNR------------------------- 60
           MAMAKFAA+LLLALIAFSMLQTTVMAG+   GR+R                         
Sbjct: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60

Query: 61  -------------NAQIDVPLDAEKHSTTSHACSSAKSAAGSACVCRLATMETKPFALAT 100
                        NAQI  PL A  H+TT+HACSSAKSAAGSACVC LAT ETKP ALAT
Sbjct: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT 120

[Close]

BLAST of CmUC10G196280.1 vs. NCBI nr
Match: KAG7022220.1 (hypothetical protein SDJN02_15950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 9.8e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 27 GSSGRNRNAQIDVPLDAEKHSTTSHACSSAKSAAGSACVCRLATMETKPFALATTIGRQR 86
          G  GRNRNAQ+  PLDA  HSTT+HACS AK+AA SAC CR  TMETK FALATT GRQR
Sbjct: 5  GRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQR 64

Query: 87 KEDPNALKK 96
          KE PNAL+K
Sbjct: 65 KEGPNALRK 73

[Close]

BLAST of CmUC10G196280.1 vs. NCBI nr
Match: KAG6580964.1 (hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-17
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 29  SGRNRNAQIDVPLDAEKHSTTSHACSSAKSAAGSACVCRLATMETKPFALATTIGRQRKE 88
           + R+ NAQI  PL A  H+TT+HACSSAKSAAGSACVC LAT ETKP ALATT GR RKE
Sbjct: 110 ASRSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKE 169

Query: 89  DPNALKKT 97
           DPNALKKT
Sbjct: 170 DPNALKKT 177

[Close]

BLAST of CmUC10G196280.1 vs. NCBI nr
Match: KAF3640438.1 (BURP domain-containing-like protein [Capsicum annuum])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 3  MAKFAALLLLALIAFSMLQTTVMAGSSGRNRNAQI--DVPLDAEKHSTTSHACSSAKSAA 62
          MAK  ++LLLAL+A SML TTV+A ++G++ +A +  +V     KHSTTSHACSSAKSAA
Sbjct: 1  MAKIVSILLLALLAISMLATTVLA-ANGKHHHANVCHNVQGGVAKHSTTSHACSSAKSAA 60

Query: 63 GSACVCRLATMETKPFALATTIGRQRKEDPNALK 95
           SACV  L  MET+ F   TT GR RKEDPNAL+
Sbjct: 61 TSACVFHLVPMETRLFVHVTTTGRPRKEDPNALE 93

[Close]

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL
Match: A0A6J1EZT1 (uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNAQIDVPLDAEKHSTTSHACSSAKS 60
          MAMAKFAA+L+L+LIA SM +TTVMAG+   GRNRNAQ+  PLDA  HSTT+HACS AK+
Sbjct: 3  MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKN 62

Query: 61 AAGSACVCRLATMETKPFALATTIGRQRKEDPNALKK 96
          AA SAC CR  TMETK FALATT GRQRKE PNAL+K
Sbjct: 63 AAESACACRRVTMETKAFALATTTGRQRKEGPNALRK 99

[Close]

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL
Match: A0A371FQX0 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_38739 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1   MAMAKFAALLLLALIAFSMLQTTVMA--GSSGR---NRNAQIDVPLDAEKHSTTSHACSS 60
           MAMAKF A ++LALIA SMLQT VMA  G  G    N+NA  +   D  + +TTS AC S
Sbjct: 54  MAMAKFFAAMILALIAISMLQTLVMAANGQEGHLYDNKNAHHNARGDVARPNTTSPACFS 113

Query: 61  AKSAAGSACVCRLATMETKPFALATTIGRQRKEDPNALK 95
            +SAAG+ACVC    M  KP ALATTIGR RKEDP+AL+
Sbjct: 114 VRSAAGNACVCPRGIMVIKPCALATTIGRPRKEDPSALE 152

[Close]

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL
Match: A0A0L9U385 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g024500 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 61/123 (49.59%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 1   MAMAKFAALLLLALIAFSMLQTTVMAGSS-----GRNRNAQIDVPLDAEKHSTTSHACSS 60
           MAMAKF A ++LALIA SMLQT VMA +        N+NA  +   DA + +TTS AC S
Sbjct: 1   MAMAKFLAAMILALIAISMLQTVVMAANGHGDHLNDNKNAHHNARGDATRPNTTSPACFS 60

Query: 61  AKSAAGSACVCRLATMETKPFALATTIGRQRKEDPNALKKTPIHFAANS----ISFVSPF 115
            +SAAGSACV     M  +  ALATT GR R+EDP+AL+  P H    S     SF+ PF
Sbjct: 61  VRSAAGSACVFLRVIMVIRLCALATTTGRPRREDPSALELQPQHQMLLSYIFITSFIVPF 120

[Close]

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL
Match: A0A200QSF0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_285g107 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGSS-----GRNRNAQIDVPLDAEKHSTTSHACSS 60
          MA  KF AL+LLAL+A SML+TT +          R  +A  DV   A + STTSHACSS
Sbjct: 1  MATLKFVALMLLALLAVSMLETTQVIAKDTQYQLQRRGSAMGDVRRGAARRSTTSHACSS 60

Query: 61 AKSAAGSACVCRLATMETKPFALATTIGRQRKEDPNALK 95
           +SAAG ACVC   +M TK  ALATT GR RKEDP+AL+
Sbjct: 61 VRSAAGLACVCPQVSMATKLCALATTTGRPRKEDPSALR 99

[Close]

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL
Match: A0A2P5C8K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_174990 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 3  MAKFAALLLLALIAFSMLQTTVMAGSS--GRNRNAQIDVPLDAEKHSTTSHACSSAKSAA 62
          M K   ++LLAL+  SM+ T V+A  +    + NA+ +   DA KH+TTSHAC SAK+AA
Sbjct: 1  MTKLLCVVLLALLGISMVATQVLAKEAEYHLDSNARENAQGDAAKHNTTSHACFSAKNAA 60

Query: 63 GSACVCRLATMETKPFALATTIGRQRKEDPNALK 95
           SA VC LATM TK  ALATT GR R+EDP+AL+
Sbjct: 61 TSAFVCLLATMATKLCALATTTGRPREEDPSALE 94

The following BLAST results are available for this feature:

BLAST of CmUC10G196280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933447.1	7.5e-26	73.20	uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata]	[more]
KAG7017706.1	7.0e-24	58.99	hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7022220.1	9.8e-18	73.91	hypothetical protein SDJN02_15950, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580964.1	2.2e-17	76.47	hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3640438.1	1.3e-14	59.57	BURP domain-containing-like protein [Capsicum annuum]	[more]

BLAST of CmUC10G196280.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZT1	3.6e-26	73.20	uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A371FQX0	1.9e-14	58.59	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_38739 P...	[more]
A0A0L9U385	7.1e-14	49.59	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g024500 PE...	[more]
A0A200QSF0	2.7e-13	55.56	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_285g107 PE=4 SV=1	[more]
A0A2P5C8K0	1.5e-11	54.26	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_174990 PE...	[more]

BLAST of CmUC10G196280.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC10G196280	CmUC10G196280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G196280.1-exon	CmUC10G196280.1-exon-CmU531Chr10:27885837..27886005	exon
CmUC10G196280.1-exon	CmUC10G196280.1-exon-CmU531Chr10:27886116..27886145	exon
CmUC10G196280.1-exon	CmUC10G196280.1-exon-CmU531Chr10:27886662..27887110	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G196280.1-five_prime_utr	CmUC10G196280.1-five_prime_utr-CmU531Chr10:27885837..27885936	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G196280.1-cds	CmUC10G196280.1-cds-CmU531Chr10:27885937..27886005	CDS
CmUC10G196280.1-cds	CmUC10G196280.1-cds-CmU531Chr10:27886116..27886145	CDS
CmUC10G196280.1-cds	CmUC10G196280.1-cds-CmU531Chr10:27886662..27887015	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G196280.1-three_prime_utr	CmUC10G196280.1-three_prime_utr-CmU531Chr10:27887016..27887110	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC10G196280.1	CmUC10G196280.1-protein	polypeptide